{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,5]],"date-time":"2026-05-05T18:14:36Z","timestamp":1778004876573,"version":"3.51.4"},"update-to":[{"DOI":"10.1371\/journal.ppat.1014082","type":"new_version","label":"New version","source":"publisher","updated":{"date-parts":[[2026,5,5]],"date-time":"2026-05-05T00:00:00Z","timestamp":1777939200000}}],"reference-count":62,"publisher":"Public Library of Science (PLoS)","issue":"4","license":[{"start":{"date-parts":[[2026,4,21]],"date-time":"2026-04-21T00:00:00Z","timestamp":1776729600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100006492","name":"Division of Intramural Research, National Institute of Allergy and Infectious Diseases","doi-asserted-by":"publisher","award":["CEIRR contract number 75N93021C00017"],"award-info":[{"award-number":["CEIRR contract number 75N93021C00017"]}],"id":[{"id":"10.13039\/100006492","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["R35 HL150803 and R01 AI190367"],"award-info":[{"award-number":["R35 HL150803 and R01 AI190367"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["www.plospathogens.org"],"crossmark-restriction":false},"short-container-title":["PLoS Pathog"],"abstract":"<jats:p>\n                    Viral transmission from infected donors to uninfected recipients is the key event underlying the spread of viral pathogens at the level of a host population. Successful viral transmission from a donor to a recipient depends on several factors including the infectiousness of the donor. Donor infectiousness in turn can depend on the viral kinetics and viral load of the donor, donor behavior and symptoms, and donor immunity. Here, we use a mouse model of murine respirovirus (otherwise known as Sendai virus SeV) infection to quantitatively explore donor determinants of respiratory virus transmission. The experimental transmission studies we analyze are specifically designed to address the effect that pre-existing donor immunity may have on transmission potential by studying SeV transmission from both immunized and control (placebo-immunized) donors to na\u00efve recipients. We specifically focus on the impact of tissue resident memory (TRM) CD8 T cells on donor transmission potential by considering immunization strategies that primarily generate CD8 T cell immunity. Through quantitative analyses of these experiments, we find that pre-existing CD8 TRMs act to reduce donor transmission potential. This finding is in agreement with previous findings and can be in part explained by a reduction in total infection load in immunized donors. However, even once differences in infection load between immunized and control donors are accounted for, immunized donors still have reduced infectiousness relative to control donors. We explore possible reasons for this unexpected pattern using a mathematical model that integrates within-host viral dynamics and between-host transmission occurrences. Analysis of model simulations, along with observations from knock-out experiments, suggests that interferon gamma (IFN-\n                    <jats:inline-formula id=\"ppat.1014082.e001\">\n                      <jats:alternatives>\n                        <jats:graphic xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" id=\"ppat.1014082.e001g\" mimetype=\"image\" position=\"anchor\" xlink:href=\"info:doi\/10.1371\/journal.ppat.1014082.e001\" xlink:type=\"simple\"\/>\n                        <mml:math xmlns:mml=\"http:\/\/www.w3.org\/1998\/Math\/MathML\" display=\"inline\" id=\"M1\">\n                          <mml:mrow>\n                            <mml:mrow>\n                              <mml:mi>\u03b3<\/mml:mi>\n                            <\/mml:mrow>\n                          <\/mml:mrow>\n                        <\/mml:math>\n                      <\/jats:alternatives>\n                    <\/jats:inline-formula>\n                    ) may be partly responsible for the observed differences in infectiousness between control and immune donors. Future experimental transmission studies should consider measuring IFN-\n                    <jats:inline-formula id=\"ppat.1014082.e002\">\n                      <jats:alternatives>\n                        <jats:graphic xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" id=\"ppat.1014082.e002g\" mimetype=\"image\" position=\"anchor\" xlink:href=\"info:doi\/10.1371\/journal.ppat.1014082.e002\" xlink:type=\"simple\"\/>\n                        <mml:math xmlns:mml=\"http:\/\/www.w3.org\/1998\/Math\/MathML\" display=\"inline\" id=\"M2\">\n                          <mml:mrow>\n                            <mml:mrow>\n                              <mml:mi>\u03b3<\/mml:mi>\n                            <\/mml:mrow>\n                          <\/mml:mrow>\n                        <\/mml:math>\n                      <\/jats:alternatives>\n                    <\/jats:inline-formula>\n                    levels and its effects when interpreting transmission outcomes in the context of host immunity.\n                  <\/jats:p>","DOI":"10.1371\/journal.ppat.1014082","type":"journal-article","created":{"date-parts":[[2026,4,21]],"date-time":"2026-04-21T17:49:19Z","timestamp":1776793759000},"page":"e1014082","update-policy":"https:\/\/doi.org\/10.1371\/journal.ppat.corrections_policy","source":"Crossref","is-referenced-by-count":0,"title":["Quantifying the role of pre-existing tissue resident cellular immunity in limiting respiratory virus transmission"],"prefix":"10.1371","volume":"22","author":[{"ORCID":"https:\/\/orcid.org\/0009-0002-8205-0716","authenticated-orcid":true,"given":"Ananya","family":"Saha","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sarah E.","family":"Michalets","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ida","family":"Uddb\u00e4ck","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hasan","family":"Ahmed","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jacob E.","family":"Kohlmeier","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rustom","family":"Antia","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Katia","family":"Koelle","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"340","published-online":{"date-parts":[[2026,4,21]]},"reference":[{"issue":"1","key":"ppat.1014082.ref001","doi-asserted-by":"crossref","first-page":"338","DOI":"10.1073\/pnas.94.1.338","article-title":"Heterogeneities in the transmission of infectious agents: implications for the design of control programs","volume":"94","author":"ME Woolhouse","year":"1997","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"7066","key":"ppat.1014082.ref002","doi-asserted-by":"crossref","first-page":"355","DOI":"10.1038\/nature04153","article-title":"Superspreading and the effect of individual variation on disease emergence","volume":"438","author":"JO Lloyd-Smith","year":"2005","journal-title":"Nature"},{"issue":"11","key":"ppat.1014082.ref003","doi-asserted-by":"crossref","first-page":"1714","DOI":"10.1038\/s41591-020-1092-0","article-title":"Clustering and superspreading potential of SARS-CoV-2 infections in Hong Kong","volume":"26","author":"DC Adam","year":"2020","journal-title":"Nat Med"},{"issue":"11","key":"ppat.1014082.ref004","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pbio.3000897","article-title":"Superspreading events in the transmission dynamics of SARS-CoV-2: Opportunities for interventions and control","volume":"18","author":"BM Althouse","year":"2020","journal-title":"PLoS Biol"},{"issue":"1","key":"ppat.1014082.ref005","doi-asserted-by":"crossref","first-page":"5518","DOI":"10.1038\/s41467-020-19248-0","article-title":"Full genome viral sequences inform patterns of SARS-CoV-2 spread into and within Israel","volume":"11","author":"D Miller","year":"2020","journal-title":"Nat Commun"},{"issue":"5","key":"ppat.1014082.ref006","doi-asserted-by":"crossref","first-page":"640","DOI":"10.1038\/s41564-022-01105-z","article-title":"Daily longitudinal sampling of SARS-CoV-2 infection reveals substantial heterogeneity in infectiousness","volume":"7","author":"R Ke","year":"2022","journal-title":"Nat Microbiol"},{"key":"ppat.1014082.ref007","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.67308","article-title":"Superspreaders drive the largest outbreaks of hospital onset COVID-19 infections","volume":"10","author":"CJ Illingworth","year":"2021","journal-title":"eLife"},{"issue":"10","key":"ppat.1014082.ref008","doi-asserted-by":"crossref","first-page":"919","DOI":"10.1016\/j.tim.2021.05.002","article-title":"Catch Me if You Can: Superspreading of COVID-19","volume":"29","author":"SS Lakdawala","year":"2021","journal-title":"Trends Microbiol"},{"issue":"8","key":"ppat.1014082.ref009","doi-asserted-by":"crossref","first-page":"528","DOI":"10.1038\/s41579-021-00535-6","article-title":"Transmissibility and transmission of respiratory viruses","volume":"19","author":"NHL Leung","year":"2021","journal-title":"Nat Rev Microbiol"},{"issue":"6551","key":"ppat.1014082.ref010","doi-asserted-by":"crossref","DOI":"10.1126\/science.abi5273","article-title":"Estimating infectiousness throughout SARS-CoV-2 infection course","volume":"373","author":"TC Jones","year":"2021","journal-title":"Science"},{"issue":"3","key":"ppat.1014082.ref011","first-page":"147","article-title":"SARS-CoV-2 viral load and shedding 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Viruses","volume":"10","author":"V Le Sage","year":"2023","journal-title":"Annual Review of Virology"},{"issue":"1","key":"ppat.1014082.ref015","doi-asserted-by":"crossref","first-page":"64","DOI":"10.1038\/s44298-024-00074-w","article-title":"Optimal thresholds and key parameters for predicting influenza A virus transmission events in ferrets","volume":"2","author":"TJ Kieran","year":"2024","journal-title":"Npj Viruses"},{"issue":"12","key":"ppat.1014082.ref016","doi-asserted-by":"crossref","DOI":"10.1126\/sciimmunol.aam6970","article-title":"Resident memory CD8+ T cells in the upper respiratory tract prevent pulmonary influenza virus infection","volume":"2","author":"A Pizzolla","year":"2017","journal-title":"Sci Immunol"},{"issue":"10","key":"ppat.1014082.ref017","first-page":"85832","article-title":"Vaccine-generated lung tissue-resident memory T cells provide heterosubtypic protection to influenza infection","volume":"1","author":"KD Zens","year":"2016","journal-title":"JCI 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Dynamically linking influenza virus infection kinetics, lung injury, inflammation, and disease severity. Schiffer JT, Sawyer SL, Schiffer JT, editors. eLife. 2021;10:e68864. https:\/\/doi.org\/10.7554\/eLife.68864","DOI":"10.7554\/eLife.68864"},{"issue":"8","key":"ppat.1014082.ref045","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pcbi.1009299","article-title":"Quantifying dose-, strain-, and tissue-specific kinetics of parainfluenza virus infection","volume":"17","author":"L Pinky","year":"2021","journal-title":"PLOS Comput Biol"},{"issue":"4","key":"ppat.1014082.ref046","doi-asserted-by":"crossref","DOI":"10.1128\/JVI.01579-18","article-title":"Defective viral genomes alter how Sendai virus interacts with cellular trafficking machinery, leading to heterogeneity in the production of viral particles among infected cells","volume":"93","author":"E Genoyer","year":"2019","journal-title":"J Virol"},{"issue":"3","key":"ppat.1014082.ref047","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pcbi.1002989","article-title":"A multi-scale analysis of influenza A virus fitness trade-offs due to temperature-dependent virus persistence","volume":"9","author":"A Handel","year":"2013","journal-title":"PLoS Comput Biol"},{"issue":"23","key":"ppat.1014082.ref048","doi-asserted-by":"crossref","first-page":"12544","DOI":"10.1128\/JVI.00859-12","article-title":"A mouse model for the study of contact-dependent transmission of influenza A virus and the factors that govern transmissibility","volume":"86","author":"KM Edenborough","year":"2012","journal-title":"J Virol"},{"issue":"5","key":"ppat.1014082.ref049","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pcbi.1002993","article-title":"Inference of R(0) and transmission heterogeneity from the size distribution of stuttering chains","volume":"9","author":"S Blumberg","year":"2013","journal-title":"PLoS Comput Biol"},{"key":"ppat.1014082.ref050","article-title":"Heterogeneity in transmissibility and shedding SARS-CoV-2 via droplets and aerosols","volume":"10","author":"PZ Chen","year":"2021","journal-title":"eLife"},{"issue":"5167","key":"ppat.1014082.ref051","doi-asserted-by":"crossref","first-page":"1918","DOI":"10.1126\/science.8009221","article-title":"Functional role of type I and type II interferons in antiviral defense","volume":"264","author":"U M\u00fcller","year":"1994","journal-title":"Science"},{"issue":"6013","key":"ppat.1014082.ref052","doi-asserted-by":"crossref","first-page":"44","DOI":"10.1126\/science.1198687","article-title":"Innate or Adaptive Immunity? 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