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Liu","year":"2010","journal-title":"PLoS Genet"},{"key":"ref72","doi-asserted-by":"crossref","first-page":"1613","DOI":"10.1093\/hmg\/6.10.1613","article-title":"Homologous pigmentation mutations in human, mouse and other model organisms","volume":"6","author":"IJ Jackson","year":"1997","journal-title":"Hum Mol Genet"},{"key":"ref73","doi-asserted-by":"crossref","first-page":"6632","DOI":"10.1074\/jbc.M511558200","article-title":"The second member of the human and murine bubblegum family is a testis- and brainstem-specific acyl-CoA synthetase","volume":"281","author":"Z Pei","year":"2006","journal-title":"J Biol Chem"},{"key":"ref74","doi-asserted-by":"crossref","first-page":"44","DOI":"10.1038\/nprot.2008.211","article-title":"Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources","volume":"4","author":"DW Huang","year":"2009","journal-title":"Nature Protoc"},{"key":"ref75","author":"P 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in Mammals: A Unified Explanation Based on Neural Crest Cell Behavior and Genetics (vol 197, pg 795, 2014)","volume":"198","author":"AS Wilkins","year":"2014","journal-title":"Genetics"},{"key":"ref82","doi-asserted-by":"crossref","first-page":"702","DOI":"10.1101\/gr.5105206","article-title":"How reliable are empirical genomic scans for selective sweeps?","volume":"16","author":"KM Teshima","year":"2006","journal-title":"Genome Res"},{"key":"ref83","doi-asserted-by":"crossref","first-page":"659","DOI":"10.1016\/j.tree.2013.08.003","article-title":"Population genomics of rapid adaptation by soft selective sweeps","volume":"28","author":"PW Messer","year":"2013","journal-title":"Trends Ecol Evol"},{"key":"ref84","doi-asserted-by":"crossref","first-page":"5281","DOI":"10.1038\/ncomms6281","article-title":"On the unfounded enthusiasm for soft selective sweeps","volume":"5","author":"JD Jensen","year":"2014","journal-title":"Nat Comm"},{"key":"ref85","doi-asserted-by":"crossref","first-page":"1165","DOI":"10.1214\/aos\/1013699998","article-title":"The control of the false discovery rate in multiple testing under dependency","volume":"29","author":"Y Benjamini","year":"2001","journal-title":"Ann Stat"},{"key":"ref86","doi-asserted-by":"crossref","first-page":"829","DOI":"10.1093\/genetics\/164.2.829","article-title":"False discovery rate in linkage and association genome screens for complex disorders","volume":"164","author":"C Sabatti","year":"2003","journal-title":"Genetics"},{"key":"ref87","doi-asserted-by":"crossref","first-page":"155","DOI":"10.1017\/S001667239800319X","article-title":"Genetic hitch-hiking in a subdivided population","volume":"71","author":"M Slatkin","year":"1998","journal-title":"Genetical Res"},{"key":"ref88","doi-asserted-by":"crossref","first-page":"213","DOI":"10.1017\/S0016672301005158","article-title":"Molecular diversity, structure and domestication of grasses","volume":"77","author":"ES Buckler","year":"2001","journal-title":"Genetical Res"},{"key":"ref89","doi-asserted-by":"crossref","first-page":"10667","DOI":"10.1073\/pnas.0401720101","article-title":"Pattern of polymorphism after strong artificial selection in a domestication event","volume":"101","author":"H Innan","year":"2004","journal-title":"Proc Natl Acad Sci USA"},{"key":"ref90","doi-asserted-by":"crossref","first-page":"585","DOI":"10.1093\/genetics\/123.3.585","article-title":"Statistical-Method for Testing the Neutral Mutation Hypothesis by DNA Polymorphism","volume":"123","author":"F Tajima","year":"1989","journal-title":"Genetics"},{"key":"ref91","doi-asserted-by":"crossref","first-page":"337","DOI":"10.1093\/bioinformatics\/18.2.337","article-title":"Generating samples under a Wright-Fisher neutral model of genetic variation","volume":"18","author":"RR Hudson","year":"2002","journal-title":"Bioinformatics"}],"container-title":["PLOS Genetics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pgen.1005851","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,6,14]],"date-time":"2024-06-14T19:51:08Z","timestamp":1718394668000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pgen.1005851"}},"subtitle":[],"editor":[{"given":"Matthew T","family":"Webster","sequence":"first","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2016,3,4]]},"references-count":91,"journal-issue":{"issue":"3","published-online":{"date-parts":[[2016,3,4]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pgen.1005851","relation":{},"ISSN":["1553-7404"],"issn-type":[{"value":"1553-7404","type":"electronic"}],"subject":[],"published":{"date-parts":[[2016,3,4]]}}}