{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,6]],"date-time":"2026-03-06T19:04:17Z","timestamp":1772823857457,"version":"3.50.1"},"reference-count":25,"publisher":"Public Library of Science (PLoS)","issue":"6","license":[{"start":{"date-parts":[[2012,6,29]],"date-time":"2012-06-29T00:00:00Z","timestamp":1340928000000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"DOI":"10.1371\/journal.pone.0039960","type":"journal-article","created":{"date-parts":[[2012,6,29]],"date-time":"2012-06-29T21:41:34Z","timestamp":1341006094000},"page":"e39960","update-policy":"https:\/\/doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":37,"title":["BiofOmics: A Web Platform for the Systematic and Standardized Collection of High-Throughput Biofilm Data"],"prefix":"10.1371","volume":"7","author":[{"given":"An\u00e1lia","family":"Louren\u00e7o","sequence":"first","affiliation":[]},{"given":"Andreia","family":"Ferreira","sequence":"additional","affiliation":[]},{"given":"Nuno","family":"Veiga","sequence":"additional","affiliation":[]},{"given":"Idalina","family":"Machado","sequence":"additional","affiliation":[]},{"given":"Maria Olivia","family":"Pereira","sequence":"additional","affiliation":[]},{"given":"Nuno F.","family":"Azevedo","sequence":"additional","affiliation":[]}],"member":"340","published-online":{"date-parts":[[2012,6,29]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"86","DOI":"10.1038\/scientificamerican0178-86","article-title":"How bacteria stick.","volume":"238","author":"JW Costerton","year":"1978","journal-title":"Sci Am"},{"key":"ref2","article-title":"The biofilm matrix. Nat Rev Microbiol 8: 623\u2013633.","author":"HC Flemming","year":"2010"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"1318","DOI":"10.1126\/science.284.5418.1318","article-title":"Bacterial biofilms: a common cause of persistent infections.","volume":"284","author":"JW Costerton","year":"1999","journal-title":"Science"},{"key":"ref4","article-title":"Biofilm formation and the food industry, a focus on the bacterial outer surface. J Appl Microbiol 109: 1117\u20131131.","author":"HR Van","year":"2010"},{"key":"ref5","article-title":"Persistence of Helicobacter pylori in heterotrophic drinking-water biofilms. Appl Environ Microbiol 74: 5898-5904.","author":"MS Giao","year":"2008"},{"key":"ref6","article-title":"Microbial diversity in biofilms on water distribution pipes of different materials. Water Sci Technol 61: 163\u2013171.","author":"J Yu","year":"2010"},{"key":"ref7","article-title":"Microbial sciences: the superficial life of microbes. Nature 441: 300\u2013302.","author":"R Kolter","year":"2006"},{"key":"ref8","article-title":"Engineering biofilm formation and dispersal. Trends Biotechnol 29: 87-94.","author":"TK Wood","year":"2011"},{"key":"ref9","article-title":"Time to \u201cgo large\u201d on biofilm research: advantages of an omics approach. Biotechnol Lett 31: 477\u2013485.","author":"NF Azevedo","year":"2009"},{"key":"ref10","article-title":"Global Transcriptome Changes Underlying Colony Growth in the Opportunistic Human Pathogen Aspergillus fumigatus. Eukaryot Cell.","author":"JG Gibbons","year":"2011"},{"key":"ref11","article-title":"Response of sessile cells to stress: from changes in gene expression to phenotypic adaptation. FEMS Immunol Med Microbiol 59: 239\u2013252.","author":"T Coenye","year":"2010"},{"key":"ref12","article-title":"Proteomics of the bacterial cross-talk by quorum sensing. J Proteomics 74: 19\u201334.","author":"CR Di","year":"2011"},{"key":"ref13","article-title":"Metabolome-proteome differentiation coupled to microbial divergence. MBio 1.","author":"P Wilmes","year":"2010"},{"key":"ref14","article-title":"Shear stress, temperature, and inoculation concentration influence the adhesion of water-stressed Helicobacter pylori to stainless steel 304 and polypropylene. Appl Environ Microbiol 72: 2936\u20132941.","author":"NF Azevedo","year":"2006"},{"key":"ref15","article-title":"Microtiter susceptibility testing of microbes growing on peg lids: a miniaturized biofilm model for high-throughput screening. Nat Protoc 5: 1236\u20131254.","author":"JJ Harrison","year":"2010"},{"key":"ref16","article-title":"Effect of antimicrobial residues on early adhesion and biofilm formation by wild-type and benzalkonium chloride-adapted Pseudomonas aeruginosa. Biofouling 27: 1151\u20131159.","author":"I Machado","year":"2011"},{"key":"ref17","article-title":"A modified microtiter-plate test for quantification of staphylococcal biofilm formation. J Microbiol Methods 40: 175\u2013179.","author":"S Stepanovic","year":"2000"},{"key":"ref18","article-title":"Discriminating multi-species populations in biofilms with peptide nucleic acid fluorescence in situ hybridization (PNA FISH). PLoS One 6: e14786.","author":"C Almeida","year":"2011"},{"key":"ref19","article-title":"Comparison of multiple methods for quantification of microbial biofilms grown in microtiter plates. J Microbiol Methods 72: 157\u2013165.","author":"E Peeters","year":"2008"},{"key":"ref20","first-page":"113","article-title":"A systematic approach to the interrogation and sharing of standardised biofilm signatures.","author":"A Louren\u00e7o","year":"2012"},{"key":"ref21","first-page":"181","article-title":"MorphoCol: a powerful tool for the clinical profiling of pathogenic bacteria.","author":"AM Sousa","year":"2012"},{"key":"ref22","article-title":"Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 39: D38\u2013D51.","author":"EW Sayers","year":"2011"},{"key":"ref23","article-title":"CAMP: a useful resource for research on antimicrobial peptides. Nucleic Acids Res 38: D774\u2013D780.","author":"S Thomas","year":"2010"},{"key":"ref24","article-title":"Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet 29: 365\u2013371.","author":"A Brazma","year":"2001"},{"key":"ref25","article-title":"The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol 25: 887\u2013893.","author":"CF Taylor","year":"2007"}],"container-title":["PLoS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0039960","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,10,22]],"date-time":"2018-10-22T20:53:54Z","timestamp":1540241634000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0039960"}},"subtitle":[],"editor":[{"given":"Jamunarani","family":"Vadivelu","sequence":"first","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2012,6,29]]},"references-count":25,"journal-issue":{"issue":"6","published-online":{"date-parts":[[2012,6,29]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0039960","relation":{},"ISSN":["1932-6203"],"issn-type":[{"value":"1932-6203","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,6,29]]}}}