{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,5]],"date-time":"2025-11-05T20:51:04Z","timestamp":1762375864532},"reference-count":51,"publisher":"Public Library of Science (PLoS)","issue":"7","license":[{"start":{"date-parts":[[2014,7,8]],"date-time":"2014-07-08T00:00:00Z","timestamp":1404777600000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"DOI":"10.1371\/journal.pone.0101727","type":"journal-article","created":{"date-parts":[[2014,7,8]],"date-time":"2014-07-08T17:39:15Z","timestamp":1404841155000},"page":"e101727","update-policy":"http:\/\/dx.doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":7,"title":["The Past and Present of an Estuarine-Resident Fish, the \u201cFour-Eyed Fish\u201d Anableps anableps (Cyprinodontiformes, Anablepidae), Revealed by mtDNA Sequences"],"prefix":"10.1371","volume":"9","author":[{"given":"Luciana Almeida","family":"Watanabe","sequence":"first","affiliation":[]},{"given":"Marcelo","family":"Vallinoto","sequence":"additional","affiliation":[]},{"given":"Nils Asp","family":"Neto","sequence":"additional","affiliation":[]},{"given":"Janice","family":"Muriel-Cunha","sequence":"additional","affiliation":[]},{"given":"Ulrich","family":"Saint-Paul","sequence":"additional","affiliation":[]},{"given":"Horacio","family":"Schneider","sequence":"additional","affiliation":[]},{"given":"Iracilda","family":"Sampaio","sequence":"additional","affiliation":[]}],"member":"340","published-online":{"date-parts":[[2014,7,8]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"937","DOI":"10.1006\/ecss.2002.1037","article-title":"Dispersal, Genetic Differentiation and Speciation in Estuarine Organisms","volume":"55","author":"DT Bilton","year":"2002","journal-title":"Estuarine, Coastal and Shelf Science"},{"key":"ref2","unstructured":"Miranda LB, Castro BM, Kjerfve B (2002) Princ\u00edpios de Oceanografia F\u00edsica de estu\u00e1rios. S\u00e3o Paulo: EDUSP."},{"key":"ref3","doi-asserted-by":"crossref","first-page":"433","DOI":"10.1007\/s11273-004-0413-2","article-title":"A Model of Holocene Mangrove Development and Relative Sea-level Changes on the Bragan\u00e7a Peninsula (Northern Brazil)","volume":"13","author":"M Cohen","year":"2005","journal-title":"Wetlands Ecology and Management"},{"key":"ref4","unstructured":"Butler AJ (1999) Seagrass in Australia: strategic review and development of an R &amp; D plan\/Alan Butler and Peter Jernakoff; Jernakoff P, editor. Collingwood, Vic. CSIRO Publishing."},{"key":"ref5","doi-asserted-by":"crossref","first-page":"633","DOI":"10.1641\/0006-3568(2001)051[0633:TICAMO]2.0.CO;2","article-title":"The identification, conservation, and management of estuarine and marine nurseries for fish and invertebrates","volume":"51","author":"MW Beck","year":"2001","journal-title":"Bioscience"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"907","DOI":"10.1038\/35016000","article-title":"The genetic legacy of the Quaternary ice ages","volume":"405","author":"G Hewitt","year":"2000","journal-title":"Nature"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"2849","DOI":"10.1046\/j.1365-294X.2001.t01-1-01406.x","article-title":"Fine-scale genetic structure, estuarine colonization and incipient speciation in the marine silverside fish <italic>Odontesthes argentinensis<\/italic>","volume":"10","author":"LB Beheregaray","year":"2001","journal-title":"Molecular Ecology"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"2387","DOI":"10.1046\/j.1365-294X.2003.01921.x","article-title":"Oceanic interchange and nonequilibrium population structure in the estuarine dependent Indo-Pacific tasselfish, <italic>Polynemus sheridani<\/italic>","volume":"12","author":"SF Chenoweth","year":"2003","journal-title":"Molecular Ecology"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"275","DOI":"10.1111\/j.1365-294X.2006.03140.x","article-title":"Pleistocene isolation in the Northwestern Pacific marginal seas and limited dispersal in a marine fish, <italic>Chelon haematocheilus<\/italic> (Temminck &amp; Schlegel, 1845)","volume":"16","author":"J-X Liu","year":"2007","journal-title":"Molecular Ecology"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"701","DOI":"10.1029\/92PA02253","article-title":"On the Structure and Origin of Major Glaciation Cycles 1. Linear Responses to Milankovitch Forcing","volume":"7","author":"J Imbrie","year":"1992","journal-title":"Paleoceanography"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1038\/nature01089","article-title":"Links between climate and sea levels for the past three million years","volume":"419","author":"K Lambeck","year":"2002","journal-title":"Nature"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"129","DOI":"10.1126\/science.225.4658.129","article-title":"Amazon basin: a system in equilibrium","volume":"225","author":"E Salati","year":"1984","journal-title":"Science"},{"key":"ref13","unstructured":"Franzinelli E (1992) Evolution of the geomorphology of the coast of the State of Para, Brazil. In: Prost MT, editor. Evolution des littoraux de Guyane et de la Zone Cara\u00efbe Meridionale pendant le Quaternaire. Paris: ORSTOM. pp. 203\u2013230."},{"key":"ref14","doi-asserted-by":"crossref","first-page":"527","DOI":"10.25249\/0375-7536.2000303527530","article-title":"Tectonic control on the coastal zone geomorphology of the northeastern Para state","volume":"30","author":"PWM Souza-Filho","year":"2000","journal-title":"Revista Brasileira de Geoci\u00eancias"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"427","DOI":"10.1590\/S0102-261X2005000400006","article-title":"Costa de manguezais de macromar\u00e9 da Amaz\u00f4nia: cen\u00e1rios morfol\u00f3gicos, mapeamento e quantifica\u00e7\u00e3o de \u00e1reas usando dados de sensores remotos","volume":"23","author":"PWM Souza-Filho","year":"2005","journal-title":"Revista Brasileira de Geof\u00edsica"},{"key":"ref16","unstructured":"Torres AM, El-Robrini M (2006) Amapa. In: Muehe D, editor. Eros\u00e3o e prograda\u00e7\u00e3o do litoral brasileiro. Brasilia: Minist\u00e9rio do Meio Ambiente. pp. 1\u201340."},{"key":"ref17","doi-asserted-by":"crossref","unstructured":"Souza-Filho PW, Lessa GC, Cohen MC, Costa FR, Lara RJ (2009) The subsiding macrotidal barrier estuarine system of the eastern Amazon coast, Northern Brazil. Geology and Geomorphology of Holocene Coastal Barriers of Brazil: Springer. pp. 347\u2013375.","DOI":"10.1007\/978-3-540-44771-9_11"},{"key":"ref18","unstructured":"Nelson JS (2006) Fishes of the world. New York: John Wiley and Sons, Inc. 601p."},{"key":"ref19","unstructured":"Sivak JG (1976) Optics of the eye of the &quot;four-eyed fish&quot; (<italic>Anableps anableps<\/italic>). Vision Research 16: 531\u2013534, IN536."},{"key":"ref20","first-page":"145","article-title":"Evolutionary attempts at 4 eyes in vertebrates","volume":"99","author":"IR Schwab","year":"2001","journal-title":"Transactions of the American Ophthalmological Society"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"323","DOI":"10.1002\/jmor.1050620208","article-title":"Adaptations for viviparity in embryos and ovary of <italic>Anableps Anableps<\/italic>","volume":"62","author":"CL Turner","year":"1938","journal-title":"Journal of Morphology"},{"key":"ref22","unstructured":"Ghedotti MJ (2003) Family Anablepidae (four-eyed fishes, one sided livebears and the white eye). In: Reis RE, Kullander SO, Ferraris CJ, editors. Checklist of the freshwater fishes of South and Central America. Porto Alegre: EDIPUCRS. pp. 582\u2013585."},{"key":"ref23","doi-asserted-by":"crossref","first-page":"271","DOI":"10.1080\/10635150701313855","article-title":"Geological Dates and Molecular Rates: Rapid Divergence of Rivers and Their Biotas","volume":"56","author":"JM Waters","year":"2007","journal-title":"Systematic Biology"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"2093","DOI":"10.1111\/j.1095-8649.2010.02821.x","article-title":"Comparing the performance of multiple mitochondrial genes in the analysis of Australian freshwater fishes","volume":"77","author":"T Page","year":"2010","journal-title":"Journal of Fish Biology"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"3592","DOI":"10.1111\/j.1365-294X.2007.03405.x","article-title":"Genetic divergence in the Atlantic Mediterranean Montagu&apos;s blenny, <italic>Coryphoblennius galerita<\/italic> (Linnaeus 1758) revealed by molecular and morphological characters","volume":"16","author":"VS Domingues","year":"2007","journal-title":"Molecular Ecology"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"415","DOI":"10.1098\/rspb.1998.0310","article-title":"When oceans meet: a teleost shows secondary intergradation at an Indian-Pacific interface","volume":"265","author":"SF Chenoweth","year":"1998","journal-title":"Proceedings of the Royal Society of London Series B: Biological Sciences"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"277","DOI":"10.1016\/j.ympev.2005.01.019","article-title":"Impact of glaciations and geographic distance on the genetic structure of a tropical estuarine fish <italic>Ethmalosa fimbriata<\/italic> (Clupeidae S Bowdich 1825)","volume":"36","author":"JD Durand","year":"2005","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"921","DOI":"10.1007\/s10592-009-9936-7","article-title":"Evolution and maintenance of divergent lineages in an endangered freshwater fish, <italic>Macquaria australasic<\/italic>a","volume":"11","author":"L Faulks","year":"2010","journal-title":"Conservation Genetics"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"1753","DOI":"10.1046\/j.1365-294X.2002.01570.x","article-title":"Phylogeography of western Pacific <italic>Leucetta \u2018chagosensis\u2019<\/italic> (Porifera: Calcarea) from ribosomal DNA sequences: implications for population history and conservation of the Great Barrier Reef World Heritage Area (Australia)","volume":"11","author":"G W\u00f6rheide","year":"2002","journal-title":"Molecular Ecology"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"2553","DOI":"10.1046\/j.1365-294X.2002.01638.x","article-title":"Mitochondrial DNA variation in Indo-Pacific populations of the giant tiger prawn, <italic>Penaeus monodon<\/italic>","volume":"11","author":"JAH Benzie","year":"2002","journal-title":"Molecular Ecology"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.1365-294X.2006.03141.x","article-title":"Pleistocene isolation and recent gene flow in <italic>Haliotis asinina<\/italic>, an Indo-Pacific vetigastropod with limited dispersal capacity","volume":"16","author":"B Imron, Jeffrey","year":"2007","journal-title":"Molecular Ecology"},{"key":"ref32","unstructured":"El-Robrini E, Souza Filho PWM, Silva CA, Silveira OFM, Faria L Jr, et al. Registro das oscila\u00e7\u00f5es do n\u00edvel do mar na plataforma continental norte do Brasil; 1992; Manaus. pp. 73\u201375."},{"key":"ref33","doi-asserted-by":"crossref","first-page":"713","DOI":"10.1038\/35021035","article-title":"Timing of the Last Glacial Maximum from observed sea-level minima","volume":"406","author":"Y Yokoyama","year":"2000","journal-title":"Nature"},{"key":"ref34","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1006\/qres.1998.2020","article-title":"Late Quaternary Vegetation and Climate Change in the Amazon Basin Based on a 50,000 Year Pollen Record from the Amazon Fan, ODP Site 932","volume":"51","author":"SG Haberle","year":"1999","journal-title":"Quaternary Research"},{"key":"ref35","unstructured":"Filho PS, Cohen M, Lara R, Lessa G, Koch B, et al. (2006) Holocene coastal evolution and facies model of the Bragan\u00e7a macrotidal flat on the Amazon Mangrove Coast, Northern Brazil. Journal of Coastal Research: 306\u2013310."},{"key":"ref36","doi-asserted-by":"crossref","first-page":"923","DOI":"10.1177\/0959683608091798","article-title":"Palaeodrainage on Maraj\u00f3 Island, northern Brazil, in relation to Holocene relative sea-level dynamics","volume":"18","author":"DF Rossetti","year":"2008","journal-title":"The Holocene"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"229","DOI":"10.46357\/bcnaturais.v3i3.677","article-title":"Ecologia reprodutiva dos tralhotos <italic>Anableps anableps<\/italic> e <italic>Anableps microlepis<\/italic> (Pisces: Osteichthyes: Cyprinodontiformes: Anablepidae) no rio Paracauari, ilha de Maraj\u00f3, Par\u00e1, Brasil","volume":"3","author":"FL Nascimento","year":"2008","journal-title":"Boletim do Museu Paraense Em\u00edlio Goeldi"},{"key":"ref38","unstructured":"Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: A Laboratory Manual. New York: Cold Spring Harbor Laboratory Press."},{"key":"ref39","doi-asserted-by":"crossref","first-page":"919","DOI":"10.1590\/S1519-69842007000500016","article-title":"Population analysis of <italic>Scomberomorus cavalla<\/italic> (Perciformes, Scombridae) from the Northern and Northeastern coast of Brazil","volume":"67","author":"EL Santa Br\u00edgida","year":"2007","journal-title":"Brazilian Journal of Biology"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"4673","DOI":"10.1093\/nar\/22.22.4673","article-title":"CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice","volume":"22","author":"JD Thompson","year":"1994","journal-title":"Nucleic Acids Research"},{"key":"ref41","first-page":"95","article-title":"BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95\/98\/NT","volume":"41","author":"TA Hall","year":"1999","journal-title":"Nucleic Acids Symposium Series"},{"key":"ref42","doi-asserted-by":"crossref","first-page":"564","DOI":"10.1111\/j.1755-0998.2010.02847.x","article-title":"Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows","volume":"10","author":"L Excoffier","year":"2010","journal-title":"Molecular Ecology Resources"},{"key":"ref43","doi-asserted-by":"crossref","first-page":"962","DOI":"10.1111\/j.1471-8286.2007.01807.x","article-title":"kakusan: a computer program to automate the selection of a nucleotide substitution model and the configuration of a mixed model on multilocus data","volume":"7","author":"AS Tanabe","year":"2007","journal-title":"Molecular Ecology Notes"},{"key":"ref44","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1093\/sysbio\/syq010","article-title":"New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0","volume":"59","author":"Sp Guindon","year":"2010","journal-title":"Systematic Biology"},{"key":"ref45","doi-asserted-by":"crossref","first-page":"1952","DOI":"10.1111\/j.1365-294X.2011.05066.x","article-title":"The performance of phylogenetic algorithms in estimating haplotype genealogies with migration","volume":"20","author":"W Salzburger","year":"2011","journal-title":"Molecular Ecology"},{"key":"ref46","doi-asserted-by":"crossref","first-page":"2092","DOI":"10.1093\/oxfordjournals.molbev.a004034","article-title":"Statistical Properties of New Neutrality Tests Against Population Growth","volume":"19","author":"SE Ramos-Onsins","year":"2002","journal-title":"Molecular Biology and Evolution"},{"key":"ref47","doi-asserted-by":"crossref","first-page":"1451","DOI":"10.1093\/bioinformatics\/btp187","article-title":"DnaSP v5: a software for comprehensive analysis of DNA polymorphism data","volume":"25","author":"P Librado","year":"2009","journal-title":"Bioinformatics"},{"key":"ref48","doi-asserted-by":"crossref","first-page":"1969","DOI":"10.1093\/molbev\/mss075","article-title":"Bayesian Phylogenetics with BEAUti and the BEAST 1.7","volume":"29","author":"AJ Drummond","year":"2012","journal-title":"Molecular Biology and Evolution"},{"key":"ref49","doi-asserted-by":"crossref","first-page":"208","DOI":"10.1006\/mpev.1999.0625","article-title":"Amphi-Panamaic geminates of snook (Percoidei: Centropomidae) provide a calibration of the divergence rates in the mitochondrial DNA control region of fishes","volume":"13","author":"KA Donaldson","year":"1999","journal-title":"Molecular Phylogenetics and Evolution"},{"key":"ref50","unstructured":"Rambaut A, Drummond AJ (2009) Tracer. 1.5 ed."},{"key":"ref51","doi-asserted-by":"crossref","first-page":"2363","DOI":"10.1093\/bioinformatics\/bth250","article-title":"BAPS 2: enhanced possibilities for the analysis of genetic population structure","volume":"20","author":"J Corander","year":"2004","journal-title":"Bioinformatics"}],"container-title":["PLoS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0101727","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,5,29]],"date-time":"2024-05-29T09:40:59Z","timestamp":1716975659000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0101727"}},"subtitle":[],"editor":[{"given":"Michael","family":"Knapp","sequence":"first","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2014,7,8]]},"references-count":51,"journal-issue":{"issue":"7","published-online":{"date-parts":[[2014,7,8]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0101727","relation":{},"ISSN":["1932-6203"],"issn-type":[{"value":"1932-6203","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,7,8]]}}}