{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,29]],"date-time":"2025-10-29T19:25:41Z","timestamp":1761765941095,"version":"3.37.3"},"reference-count":86,"publisher":"Public Library of Science (PLoS)","issue":"5","license":[{"start":{"date-parts":[[2015,5,20]],"date-time":"2015-05-20T00:00:00Z","timestamp":1432080000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"DOI":"10.1371\/journal.pone.0127455","type":"journal-article","created":{"date-parts":[[2015,5,20]],"date-time":"2015-05-20T18:03:21Z","timestamp":1432145001000},"page":"e0127455","update-policy":"https:\/\/doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":31,"title":["Pyrosequencing Characterization of the Microbiota from Atlantic Intertidal Marine Sponges Reveals High Microbial Diversity and the Lack of Co-Occurrence Patterns"],"prefix":"10.1371","volume":"10","author":[{"given":"Anoop","family":"Alex","sequence":"first","affiliation":[]},{"given":"Agostinho","family":"Antunes","sequence":"additional","affiliation":[]}],"member":"340","published-online":{"date-parts":[[2015,5,20]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"301","DOI":"10.1016\/0022-0981(77)90038-7","article-title":"Electron microscope study of the association between some sponges and bacteria","volume":"30","author":"J Vacelet","year":"1977","journal-title":"J Exp Mar Biol Ecol"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"406","DOI":"10.1007\/s00248-007-9285-3","article-title":"Unique microbial signatures of the alien Hawaiian marine sponge Suberites zeteki","volume":"55","author":"P Zhu","year":"2008","journal-title":"Microb Ecol"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"e26806","DOI":"10.1371\/journal.pone.0026806","article-title":"Phylogenetic diversity, host-specificity and community profiling of sponge-associated bacteria in the northern Gulf of Mexico","volume":"6","author":"PM Erwin","year":"2011","journal-title":"PloS One"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"e80653","DOI":"10.1371\/journal.pone.0080653","article-title":"Evidence of unique and generalist microbes in distantly related sympatric intertidal marine sponges (porifera: demospongiae)","volume":"8","author":"A Alex","year":"2013","journal-title":"PloS One"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1016\/j.jembe.2005.08.014","article-title":"Bacterial community diversity associated with four marine sponges from the South China Sea based on 16S rDNA-DGGE fingerprinting","volume":"329","author":"Z-Y Li","year":"2006","journal-title":"J Exp Mar Biol Ecol"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"328","DOI":"10.1111\/j.1574-6941.2010.00869.x","article-title":"Spatial and temporal variability of the bacterial community in different chemotypes of the New Zealand marine sponge Mycale hentscheli","volume":"72","author":"SA Anderson","year":"2010","journal-title":"FEMS Microbiol Ecol"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"2070","DOI":"10.1111\/j.1462-2920.2009.02065.x","article-title":"Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts","volume":"12","author":"NS Webster","year":"2010","journal-title":"Environ Microbiol"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"650","DOI":"10.1038\/ismej.2010.165","article-title":"Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea","volume":"5","author":"OO Lee","year":"2011","journal-title":"ISME J"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"564","DOI":"10.1038\/ismej.2011.116","article-title":"Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges","volume":"6","author":"S Schmitt","year":"2012","journal-title":"ISME J"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1111\/j.1574-6941.2005.00046.x","article-title":"Marine sponges as microbial fermenters","volume":"55","author":"U Hentschel","year":"2006","journal-title":"FEMS Microbiol Ecol"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"187","DOI":"10.1038\/ismej.2007.32","article-title":"Soaking it up: the complex lives of marine sponges and their microbial associates","volume":"1","author":"MW Taylor","year":"2007","journal-title":"ISME J"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"335","DOI":"10.1111\/j.1462-2920.2011.02460.x","article-title":"Marine sponges and their microbial symbionts: love and other relationships","volume":"14","author":"NS Webster","year":"2012","journal-title":"Environ Microbiol"},{"key":"ref13","doi-asserted-by":"crossref","unstructured":"Wilkinson CC, Garrone RR. Nutrition of marine sponges. Involvement of symbiotic bacteria in the uptake of dissolved carbon. Nutr Low Metazoa-Pages 157\u2013161. 1980;","DOI":"10.1016\/B978-0-08-025904-8.50016-X"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"141","DOI":"10.4319\/lo.2003.48.1.0141","article-title":"In situ feeding and element removal in the symbiont-bearing sponge Theonella swinhoei: Bulk DOC is the major source for carbon","volume":"48","author":"G Yahel","year":"2003","journal-title":"Limnol Oceanogr"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"410","DOI":"10.1126\/science.219.4583.410","article-title":"Net primary productivity in coral reef sponges","volume":"219","author":"CR Wilkinson","year":"1983","journal-title":"Science"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"1069","DOI":"10.1093\/jxb\/erm328","article-title":"Photosynthetic Symbioses in Animals","volume":"59","author":"AA Venn","year":"2008","journal-title":"J Exp Bot"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/BF00350100","article-title":"A brominated secondary metabolite synthesized by the cyanobacterial symbiont of a marine sponge and accumulation of the crystalline metabolite in the sponge tissue","volume":"119","author":"MD Unson","year":"1994","journal-title":"Mar Biol"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"185","DOI":"10.1016\/S0022-0981(96)02653-6","article-title":"Chemical defense of the Caribbean sponge Agelas clathrodes (Schmidt)","volume":"208","author":"B Chanas","year":"1997","journal-title":"J Exp Mar Biol Ecol"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"91","DOI":"10.1007\/s00442-002-1138-7","article-title":"Biogeography of sponge chemical ecology: comparisons of tropical and temperate defenses","volume":"135","author":"MA Becerro","year":"2003","journal-title":"Oecologia"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"888","DOI":"10.1525\/bio.2011.61.11.8","article-title":"The Chemical Ecology of Sponges on Caribbean Reefs: Natural Products Shape Natural Systems","volume":"61","author":"JR Pawlik","year":"2011","journal-title":"BioScience"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"161","DOI":"10.1007\/BF00387115","article-title":"Microbial associations in sponges. I. Ecology, physiology and microbial populations of coral reef sponges","volume":"49","author":"CR Wilkinson","year":"1978","journal-title":"Mar Biol"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"2228","DOI":"10.1111\/j.1462-2920.2009.01944.x","article-title":"Complex nitrogen cycling in the sponge Geodia barretti","volume":"11","author":"F Hoffmann","year":"2009","journal-title":"Environ Microbiol"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"593","DOI":"10.1007\/s00227-009-1344-5","article-title":"Evidence of nitrification and denitrification in high and low microbial abundance sponges","volume":"157","author":"M-L Schl\u00e4ppy","year":"2010","journal-title":"Mar Biol"},{"key":"ref24","first-page":"263","article-title":"Photosymbiosis in intertidal and subtidal tropical sponges","volume":"33","author":"L Steindler","year":"2002","journal-title":"Symbiosis"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"6241","DOI":"10.1073\/pnas.93.13.6241","article-title":"A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov","volume":"93","author":"CM Preston","year":"1996","journal-title":"Proc Natl Acad Sci"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"3724","DOI":"10.1128\/AEM.70.6.3724-3732.2004","article-title":"Discovery of the Novel Candidate Phylum \u201cPoribacteria\u201d in Marine Sponges","volume":"70","author":"L Fieseler","year":"2004","journal-title":"Appl Env Microbiol"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"3724","DOI":"10.1128\/AEM.72.5.3724-3732.2006","article-title":"Characterization of a Culturable Alphaproteobacterial Symbiont Common to Many Marine Sponges and Evidence for Vertical Transmission via Sponge Larvae","volume":"72","author":"JJ Enticknap","year":"2006","journal-title":"Appl Environ Microbiol"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"7207","DOI":"10.1128\/AEM.05285-11","article-title":"Sponge-Associated Bacteria Are Strictly Maintained in Two Closely Related but Geographically Distant Sponge Hosts","volume":"77","author":"NF Montalvo","year":"2011","journal-title":"Appl Environ Microbiol"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"619","DOI":"10.1111\/j.1574-6941.2011.01243.x","article-title":"A specific mix of generalists: bacterial symbionts in Mediterranean Ircinia spp","volume":"79","author":"PM Erwin","year":"2012","journal-title":"FEMS Microbiol Ecol"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"3513","DOI":"10.1128\/AEM.00002-09","article-title":"Inter- and Intraspecific Variations of Bacterial Communities Associated with Marine Sponges from San Juan Island, Washington","volume":"75","author":"OO Lee","year":"2009","journal-title":"Appl Environ Microbiol"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"4431","DOI":"10.1128\/AEM.68.9.4431-4440.2002","article-title":"Molecular Evidence for a Uniform Microbial Community in Sponges from Different Oceans","volume":"68","author":"U Hentschel","year":"2002","journal-title":"Appl Env Microbiol"},{"key":"ref32","doi-asserted-by":"crossref","first-page":"295","DOI":"10.1128\/MMBR.00040-06","article-title":"Sponge-Associated Microorganisms: Evolution, Ecology, and Biotechnological Potential","volume":"71","author":"MW Taylor","year":"2007","journal-title":"Microbiol Mol Biol Rev"},{"key":"ref33","doi-asserted-by":"crossref","first-page":"69","DOI":"10.3354\/ame01222","article-title":"Community structure of marine bacterioplankton: patterns, networks, and relationships to function","volume":"53","author":"JA Fuhrman","year":"2008","journal-title":"Aquat Microb Ecol"},{"key":"ref34","doi-asserted-by":"crossref","first-page":"947","DOI":"10.1101\/gr.104521.109","article-title":"A global network of coexisting microbes from environmental and whole-genome sequence data","volume":"20","author":"S Chaffron","year":"2010","journal-title":"Genome Res"},{"key":"ref35","doi-asserted-by":"crossref","first-page":"343","DOI":"10.1038\/ismej.2011.119","article-title":"Using network analysis to explore co-occurrence patterns in soil microbial communities","volume":"6","author":"A Barber\u00e1n","year":"2012","journal-title":"ISME J"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"335","DOI":"10.1038\/nmeth.f.303","article-title":"QIIME allows analysis of high-throughput community sequencing data","volume":"7","author":"JG Caporaso","year":"2010","journal-title":"Nat Methods"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"668","DOI":"10.1038\/nmeth0910-668b","article-title":"Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions","volume":"7","author":"J Reeder","year":"2010","journal-title":"Nat Methods"},{"key":"ref38","doi-asserted-by":"crossref","first-page":"2194","DOI":"10.1093\/bioinformatics\/btr381","article-title":"UCHIME improves sensitivity and speed of chimera detection","volume":"27","author":"RC Edgar","year":"2011","journal-title":"Bioinformatics"},{"key":"ref39","doi-asserted-by":"crossref","first-page":"2460","DOI":"10.1093\/bioinformatics\/btq461","article-title":"Search and clustering orders of magnitude faster than BLAST","volume":"26","author":"RC Edgar","year":"2010","journal-title":"Bioinforma Oxf Engl"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"5261","DOI":"10.1128\/AEM.00062-07","article-title":"Na\u00efve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy","volume":"73","author":"Q Wang","year":"2007","journal-title":"Appl Environ Microbiol"},{"key":"ref41","doi-asserted-by":"crossref","first-page":"610","DOI":"10.1038\/ismej.2011.139","article-title":"An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea","volume":"6","author":"D McDonald","year":"2012","journal-title":"ISME J"},{"key":"ref42","doi-asserted-by":"crossref","first-page":"7537","DOI":"10.1128\/AEM.01541-09","article-title":"Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities","volume":"75","author":"PD Schloss","year":"2009","journal-title":"Appl Environ Microbiol"},{"key":"ref43","doi-asserted-by":"crossref","first-page":"783","DOI":"10.2307\/2531532","article-title":"Estimating the population size for capture-recapture data with unequal catchability","volume":"43","author":"A Chao","year":"1987","journal-title":"Biometrics"},{"key":"ref44","doi-asserted-by":"crossref","first-page":"210","DOI":"10.1080\/01621459.1992.10475194","article-title":"Estimating the Number of Classes via Sample Coverage","volume":"87","author":"A Chao","year":"1992","journal-title":"J Am Stat Assoc"},{"key":"ref45","doi-asserted-by":"crossref","first-page":"379","DOI":"10.1002\/j.1538-7305.1948.tb01338.x","article-title":"A Mathematical Theory of Communication","volume":"27","author":"CE Shannon","year":"1948","journal-title":"Bell Syst Tech J"},{"key":"ref46","doi-asserted-by":"crossref","first-page":"688","DOI":"10.1038\/163688a0","article-title":"Measurement of diversity","volume":"163","author":"EH Simpson","year":"1949","journal-title":"Nature"},{"key":"ref47","doi-asserted-by":"crossref","first-page":"e61217","DOI":"10.1371\/journal.pone.0061217","article-title":"phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data","volume":"8","author":"PJ McMurdie","year":"2013","journal-title":"PLoS ONE"},{"key":"ref48","doi-asserted-by":"crossref","first-page":"74","DOI":"10.1007\/BF00317345","article-title":"The checkerboard score and species distributions","volume":"85","author":"L Stone","year":"1990","journal-title":"Oecologia"},{"key":"ref49","doi-asserted-by":"crossref","first-page":"2606","DOI":"10.1890\/0012-9658(2000)081[2606:NMAOSC]2.0.CO;2","article-title":"Null model analysis of species co-occurence patterns","volume":"81","author":"NJ Gotelli","year":"2000","journal-title":"Ecology"},{"author":"NJ Gotelli","key":"ref50"},{"key":"ref51","doi-asserted-by":"crossref","unstructured":"Sober\u00f3n J. Pairwise versus presence\u2013absence approaches for analysing biodiversity patterns. J Biogeogr. 2015; n\/a\u2013n\/a. <comment>doi: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/dx.doi.org\/10.1111\/jbi.12475\" xlink:type=\"simple\">10.1111\/jbi.12475<\/ext-link><\/comment>","DOI":"10.1111\/jbi.12475"},{"key":"ref52","first-page":"1409","article-title":"A statistical method for evaluating systematic relationships","volume":"28","author":"R Sokal","year":"1958","journal-title":"Univ Kans Sci Bull"},{"key":"ref53","unstructured":"Oksanen J, Blanchet FG, Kindt R, Legendre P, Minchin PR, O\u2019Hara RB, et al. vegan: Community Ecology Package [Internet]. 2013. Available: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/CRAN.R-project.org\/package=vegan\" xlink:type=\"simple\">http:\/\/CRAN.R-project.org\/package=vegan<\/ext-link>"},{"key":"ref54","doi-asserted-by":"crossref","first-page":"843","DOI":"10.1007\/s002270000503","article-title":"The culturable microbial community of the Great Barrier Reef sponge Rhopaloeides odorabile is dominated by an \u03b1-Proteobacterium","volume":"138","author":"NS Webster","year":"2001","journal-title":"Mar Biol"},{"key":"ref55","doi-asserted-by":"crossref","first-page":"507","DOI":"10.1038\/35054051","article-title":"Archaeal dominance in the mesopelagic zone of the Pacific Ocean","volume":"409","author":"MB Karner","year":"2001","journal-title":"Nature"},{"key":"ref56","doi-asserted-by":"crossref","first-page":"860","DOI":"10.1038\/ismej.2009.23","article-title":"Unique archaeal assemblages in the Arctic Ocean unveiled by massively parallel tag sequencing","volume":"3","author":"PE Galand","year":"2009","journal-title":"ISME J"},{"key":"ref57","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1007\/BF00339133","article-title":"Isolation, taxonomy and phylogeny of hyperthermophilic microorganisms","volume":"11","author":"E Bl\u00f6chl","year":"1995","journal-title":"World J Microbiol Biotechnol"},{"key":"ref58","doi-asserted-by":"crossref","first-page":"560","DOI":"10.1016\/S0723-2020(11)80416-9","article-title":"Metallosphaera prunae, sp. nov., a Novel Metal-mobilizing, Thermoacidophilic Archaeum, Isolated from a Uranium Mine in Germany","volume":"18","author":"T Fuchs","year":"1995","journal-title":"Syst Appl Microbiol"},{"key":"ref59","doi-asserted-by":"crossref","first-page":"5685","DOI":"10.1073\/pnas.89.12.5685","article-title":"Archaea in coastal marine environments","volume":"89","author":"EF DeLong","year":"1992","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref60","doi-asserted-by":"crossref","first-page":"695","DOI":"10.1038\/371695a0","article-title":"High abundance of Archaea in Antarctic marine picoplankton","volume":"371","author":"EF DeLong","year":"1994","journal-title":"Nature"},{"key":"ref61","doi-asserted-by":"crossref","first-page":"1646","DOI":"10.1128\/AEM.61.4.1646-1648.1995","article-title":"Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder","volume":"61","author":"JO McInerney","year":"1995","journal-title":"Appl Environ Microbiol"},{"key":"ref62","doi-asserted-by":"crossref","first-page":"299","DOI":"10.1016\/S1389-0344(03)00034-0","article-title":"Diversity of symbiotic archaeal communities in marine sponges from Korea","volume":"20","author":"E-Y Lee","year":"2003","journal-title":"Biomol Eng"},{"key":"ref63","doi-asserted-by":"crossref","first-page":"e15774","DOI":"10.1371\/journal.pone.0015774","article-title":"Environmental Shaping of Sponge Associated Archaeal Communities","volume":"5","author":"AS Turque","year":"2010","journal-title":"PLoS ONE"},{"key":"ref64","doi-asserted-by":"crossref","first-page":"288","DOI":"10.1111\/j.1462-2920.2004.00570.x","article-title":"Diverse microbial communities inhabit Antarctic sponges","volume":"6","author":"NS Webster","year":"2004","journal-title":"Environ Microbiol"},{"key":"ref65","doi-asserted-by":"crossref","first-page":"788","DOI":"10.1038\/nature07535","article-title":"Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic","volume":"456","author":"H Agogu\u00e9","year":"2008","journal-title":"Nature"},{"key":"ref66","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1186\/1472-6785-9-4","article-title":"Diversity and abundance of photosynthetic sponges in temperate Western Australia","volume":"9","author":"M-L Lemloh","year":"2009","journal-title":"BMC Ecol"},{"key":"ref67","doi-asserted-by":"crossref","first-page":"e51834","DOI":"10.1371\/journal.pone.0051834","article-title":"Unusual Symbiotic Cyanobacteria Association in the Genetically Diverse Intertidal Marine Sponge Hymeniacidon perlevis (Demospongiae, Halichondrida)","volume":"7","author":"A Alex","year":"2012","journal-title":"PloS One"},{"key":"ref68","doi-asserted-by":"crossref","first-page":"4127","DOI":"10.1128\/AEM.71.7.4127-4131.2005","article-title":"16S rRNA phylogeny of sponge-associated cyanobacteria","volume":"71","author":"L Steindler","year":"2005","journal-title":"Appl Environ Microbiol"},{"key":"ref69","doi-asserted-by":"crossref","first-page":"969","DOI":"10.1007\/s002270000273","article-title":"Identification of the antifungal peptide-containing symbiont of the marine sponge Theonella swinhoei as a novel \u03b4-proteobacterium, \u201cCandidatus Entotheonella palauensis.\u201d","volume":"136","author":"EW Schmidt","year":"2000","journal-title":"Mar Biol"},{"key":"ref70","doi-asserted-by":"crossref","first-page":"4840","DOI":"10.1128\/AEM.71.8.4840-4849.2005","article-title":"Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta","volume":"71","author":"A Schirmer","year":"2005","journal-title":"Appl Environ Microbiol"},{"key":"ref71","doi-asserted-by":"crossref","first-page":"335","DOI":"10.1038\/ismej.2007.91","article-title":"Identification of the bacterial symbiont Entotheonella sp. in the mesohyl of the marine sponge Discodermia sp","volume":"2","author":"WM Bruck","year":"2008","journal-title":"ISME J"},{"key":"ref72","doi-asserted-by":"crossref","first-page":"366","DOI":"10.1128\/JB.180.2.366-376.1998","article-title":"Novel division level bacterial diversity in a Yellowstone hot spring","volume":"180","author":"P Hugenholtz","year":"1998","journal-title":"J Bacteriol"},{"key":"ref73","doi-asserted-by":"crossref","first-page":"7694","DOI":"10.1128\/AEM.00878-08","article-title":"Molecular microbial diversity survey of sponge reproductive stages and mechanistic insights into vertical transmission of microbial symbionts","volume":"74","author":"S Schmitt","year":"2008","journal-title":"Appl Environ Microbiol"},{"key":"ref74","doi-asserted-by":"crossref","first-page":"869","DOI":"10.1007\/s00227-004-1489-1","article-title":"Morphological evidence for vertical transmission of symbiotic bacteria in the viviparous sponge Halisarca dujardini Johnston (Porifera, Demospongiae, Halisarcida)","volume":"146","author":"AV Ereskovsky","year":"2005","journal-title":"Mar Biol"},{"key":"ref75","doi-asserted-by":"crossref","DOI":"10.1017\/S0025315407056846","article-title":"Vertical transmission and successive location of symbiotic bacteria during embryo development and larva formation in Corticium candelabrum (Porifera: Demospongiae)","volume":"87","author":"S De Caralt","year":"2007","journal-title":"J Mar Biol Assoc UK"},{"key":"ref76","doi-asserted-by":"crossref","DOI":"10.1038\/srep02583","article-title":"A single betaproteobacterium dominates the microbial community of the crambescidine-containing sponge Crambe crambe","volume":"3","author":"J Crou\u00e9","year":"2013","journal-title":"Sci Rep"},{"key":"ref77","doi-asserted-by":"crossref","first-page":"622","DOI":"10.1128\/AEM.01493-06","article-title":"Vertical transmission of diverse microbes in the tropical sponge Corticium sp","volume":"73","author":"KH Sharp","year":"2007","journal-title":"Appl Environ Microbiol"},{"key":"ref78","doi-asserted-by":"crossref","first-page":"1345","DOI":"10.1890\/06-0286","article-title":"A comparison of taxon co-occurrence patterns for macro- and microorganisms","volume":"88","author":"MC Horner-Devine","year":"2007","journal-title":"Ecology"},{"key":"ref79","doi-asserted-by":"crossref","first-page":"384","DOI":"10.1038\/nrmicro1643","article-title":"The role of ecological theory in microbial ecology","volume":"5","author":"JI Prosser","year":"2007","journal-title":"Nat Rev Microbiol"},{"key":"ref80","doi-asserted-by":"crossref","first-page":"1223","DOI":"10.1038\/ismej.2009.88","article-title":"What is microbial community ecology?","volume":"3","author":"A Konopka","year":"2009","journal-title":"ISME J"},{"key":"ref81","doi-asserted-by":"crossref","first-page":"535","DOI":"10.1111\/1462-2920.12000","article-title":"16S rRNA survey revealed complex bacterial communities and evidence of bacterial interference on human adenoids","volume":"15","author":"T Ren","year":"2013","journal-title":"Environ Microbiol"},{"key":"ref82","doi-asserted-by":"crossref","first-page":"991","DOI":"10.1038\/ismej.2012.165","article-title":"Marine microbial symbiosis heats up: the phylogenetic and functional response of a sponge holobiont to thermal stress","volume":"7","author":"L Fan","year":"2013","journal-title":"ISME J"},{"key":"ref83","doi-asserted-by":"crossref","first-page":"517","DOI":"10.1111\/j.1462-2920.2011.02664.x","article-title":"Sponge-specific clusters revisited: a comprehensive phylogeny of sponge-associated microorganisms","volume":"14","author":"RL Simister","year":"2012","journal-title":"Environ Microbiol"},{"key":"ref84","doi-asserted-by":"crossref","first-page":"438","DOI":"10.1038\/ismej.2012.111","article-title":"\u201cSponge-specific\u201d bacteria are widespread (but rare) in diverse marine environments","volume":"7","author":"MW Taylor","year":"2013","journal-title":"ISME J"},{"year":"2009","author":"H Wickham","key":"ref85"},{"key":"ref86","doi-asserted-by":"crossref","first-page":"3673","DOI":"10.1128\/AEM.68.8.3673-3682.2002","article-title":"Phylogenetic Approaches for Describing and Comparing the Diversity of Microbial Communities","volume":"68","author":"AP Martin","year":"2002","journal-title":"Appl Environ Microbiol"}],"container-title":["PLOS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0127455","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,6,9]],"date-time":"2024-06-09T04:01:08Z","timestamp":1717905668000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0127455"}},"subtitle":[],"editor":[{"given":"Connie","family":"Lovejoy","sequence":"first","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2015,5,20]]},"references-count":86,"journal-issue":{"issue":"5","published-online":{"date-parts":[[2015,5,20]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0127455","relation":{},"ISSN":["1932-6203"],"issn-type":[{"type":"electronic","value":"1932-6203"}],"subject":[],"published":{"date-parts":[[2015,5,20]]}}}