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NetCord-FACT international standards for cord blood collection, processing, and release for administration. 5th Ed. July 2013. Available from URL: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/www.factweb.org\/forms\/store\/ProductFormPublic\/search?action=1&Product_id=15B4400000122\" xlink:type=\"simple\">http:\/\/www.factweb.org\/forms\/store\/ProductFormPublic\/search?action=1&amp;Product_id=15B4400000122<\/ext-link>."},{"key":"ref4","doi-asserted-by":"crossref","first-page":"104","DOI":"10.1016\/j.clinbiochem.2010.06.017","article-title":"MALDI-TOF mass spectrometry tools for bacterial identification in clinical microbiology laboratory","volume":"44","author":"E Carbonnelle","year":"2011","journal-title":"Clinical Biochemistry"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"2761","DOI":"10.1128\/JCM.01228-07","article-title":"16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: Pluses, perils, and pitfalls","volume":"45","author":"JM Janda","year":"2007","journal-title":"Journal of Clinical 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