{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,1]],"date-time":"2026-04-01T03:32:41Z","timestamp":1775014361881,"version":"3.50.1"},"reference-count":40,"publisher":"Public Library of Science (PLoS)","issue":"3","license":[{"start":{"date-parts":[[2019,3,13]],"date-time":"2019-03-13T00:00:00Z","timestamp":1552435200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"DOI":"10.1371\/journal.pone.0210080","type":"journal-article","created":{"date-parts":[[2019,3,13]],"date-time":"2019-03-13T17:40:51Z","timestamp":1552498851000},"page":"e0210080","update-policy":"https:\/\/doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":9,"title":["Molecular and genomic typing for tuberculosis surveillance: A survey study in 26 European countries"],"prefix":"10.1371","volume":"14","author":[{"given":"Marta","family":"Andr\u00e9s","sequence":"first","affiliation":[]},{"given":"Marieke J.","family":"van der Werf","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8040-6753","authenticated-orcid":true,"given":"Csaba","family":"K\u00f6dm\u00f6n","sequence":"additional","affiliation":[]},{"given":"Stefan","family":"Albrecht","sequence":"additional","affiliation":[]},{"given":"Walter","family":"Haas","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5977-0507","authenticated-orcid":true,"given":"Lena","family":"Fiebig","sequence":"additional","affiliation":[]},{"name":"Survey study group","sequence":"additional","affiliation":[]}],"member":"340","published-online":{"date-parts":[[2019,3,13]]},"reference":[{"issue":"3","key":"ref1","doi-asserted-by":"crossref","first-page":"662","DOI":"10.1128\/JCM.00607-11","article-title":"First worldwide proficiency study on variable-number tandem-repeat typing of Mycobacterium tuberculosis complex strains","volume":"50","author":"JL de Beer","year":"2012","journal-title":"J Clin Microbiol"},{"issue":"12","key":"ref2","doi-asserted-by":"crossref","first-page":"4498","DOI":"10.1128\/JCM.01392-06","article-title":"Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis","volume":"44","author":"P Supply","year":"2006","journal-title":"Journal of clinical microbiology"},{"issue":"4","key":"ref3","doi-asserted-by":"crossref","first-page":"20386","DOI":"10.2807\/ese.18.04.20386-en","article-title":"From molecular to genomic epidemiology: transforming surveillance and control of infectious diseases","volume":"18","author":"MJ Struelens","year":"2013","journal-title":"Euro Surveill"},{"issue":"4","key":"ref4","doi-asserted-by":"crossref","first-page":"359","DOI":"10.1016\/S1473-3099(17)30123-8","article-title":"Tuberculosis is changing","volume":"17","author":"TM Walker","year":"2017","journal-title":"Lancet Infect Dis"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"77","DOI":"10.1016\/j.tube.2016.02.009","article-title":"Whole genome sequencing of Mycobacterium tuberculosis for detection of recent transmission and tracing outbreaks: A systematic review","volume":"98","author":"V Nikolayevskyy","year":"2016","journal-title":"Tuberculosis"},{"key":"ref6","article-title":"Whole genome sequencing of Mycobacterium tuberculosis for detection of drug resistance: a systematic review","author":"D Papaventsis","year":"2016","journal-title":"Clin Microbiol Infect"},{"issue":"2","key":"ref7","doi-asserted-by":"crossref","first-page":"e1001387","DOI":"10.1371\/journal.pmed.1001387","article-title":"Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study","volume":"10","author":"A Roetzer","year":"2013","journal-title":"PLoS medicine"},{"issue":"10","key":"ref8","doi-asserted-by":"crossref","first-page":"e1002137","DOI":"10.1371\/journal.pmed.1002137","article-title":"Whole Genome Sequence Analysis of a Large Isoniazid-Resistant Tuberculosis Outbreak in London: A Retrospective Observational Study","volume":"13","author":"N Casali","year":"2016","journal-title":"PLoS Med"},{"issue":"1","key":"ref9","doi-asserted-by":"crossref","first-page":"117","DOI":"10.1186\/s12916-016-0659-6","article-title":"Genetic variation in Mycobacterium tuberculosis isolates from a London outbreak associated with isoniazid resistance","volume":"14","author":"G Satta","year":"2016","journal-title":"BMC Med"},{"issue":"2","key":"ref10","doi-asserted-by":"crossref","first-page":"137","DOI":"10.1016\/S1473-3099(12)70277-3","article-title":"Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study","volume":"13","author":"TM Walker","year":"2013","journal-title":"The Lancet Infectious diseases"},{"issue":"2","key":"ref11","doi-asserted-by":"crossref","DOI":"10.2807\/1560-7917.ES.2017.22.2.30439","article-title":"A joint cross-border investigation of a cluster of multidrug-resistant tuberculosis in Austria, Romania and Germany in 2014 using classic, genotyping and whole genome sequencing methods: lessons learnt","volume":"22","author":"L Fiebig","year":"2017","journal-title":"Euro surveill"},{"key":"ref12","article-title":"Multidrug-resistant tuberculosis in migrants, multicountry cluster\u2013 13 April 2017","year":"2017"},{"key":"ref13","article-title":"ECDC roadmap for integration of molecular and genomic typing into European-level surveillance and epidemic preparedness\u2013Version 2.1, 2016\u201319","year":"2016"},{"key":"ref14","article-title":"Expert opinion on whole genome sequencing for public health surveillance","year":"2016"},{"key":"ref15","first-page":"L 293","article-title":"Offical Journal of the European Union","author":"Decision No","year":"2013"},{"issue":"Suppl 3","key":"ref16","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1111\/j.1469-0691.2007.01786.x","article-title":"Guidelines for the validation and application of typing methods for use in bacterial epidemiology","volume":"13","author":"A van Belkum","year":"2007","journal-title":"Clin Microbiol Infect"},{"key":"ref17","article-title":"Molecular typing for surveillance of multidrug-resistant tuberculosis in the EU\/EEA\u2013March 2017","year":"2017"},{"issue":"11","key":"ref18","doi-asserted-by":"crossref","DOI":"10.2807\/1560-7917.ES2014.19.11.20742","article-title":"Molecular surveillance of multi- and extensively drug-resistant tuberculosis transmission in the European Union from 2003 to 2011","volume":"19","author":"JL De Beer","year":"2014","journal-title":"Euro Surveill"},{"issue":"12","key":"ref19","doi-asserted-by":"crossref","first-page":"3924","DOI":"10.1128\/JCM.00793-08","article-title":"Transmission classification model to determine place and time of infection of tuberculosis cases in an urban area","volume":"46","author":"G de Vries","year":"2008","journal-title":"J Clin Microbiol"},{"issue":"6","key":"ref20","doi-asserted-by":"crossref","first-page":"1446","DOI":"10.1086\/516478","article-title":"Interpretation of restriction fragment length polymorphism analysis of Mycobacterium tuberculosis isolates from a state with a large rural population","volume":"175","author":"CR Braden","year":"1997","journal-title":"J Infect Dis"},{"issue":"4","key":"ref21","doi-asserted-by":"crossref","first-page":"366","DOI":"10.1093\/oxfordjournals.aje.a009822","article-title":"Influence of sampling on estimates of clustering and recent transmission of Mycobacterium tuberculosis derived from DNA fingerprinting techniques","volume":"149","author":"J Glynn","year":"1999","journal-title":"Am J Epidemiol"},{"key":"ref22","article-title":"Extensively drug-resistant (XDR) tuberculosis\u2013multi-country cluster, Romania. 21 October 2016","year":"2016"},{"issue":"5","key":"ref23","doi-asserted-by":"crossref","first-page":"1081","DOI":"10.1183\/09031936.00053012","article-title":"Minimum package for cross-border TB control and care in the WHO European region: a Wolfheze consensus statement","volume":"40","author":"M Dara","year":"2012","journal-title":"Eur Respir J"},{"issue":"7","key":"ref24","doi-asserted-by":"crossref","first-page":"2479","DOI":"10.1128\/JCM.00567-14","article-title":"Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach","volume":"52","author":"TA Kohl","year":"2014","journal-title":"Journal of clinical microbiology"},{"issue":"4","key":"ref25","doi-asserted-by":"crossref","first-page":"20380","DOI":"10.2807\/ese.18.04.20380-en","article-title":"Overview of molecular typing methods for outbreak detection and epidemiological surveillance","volume":"18","author":"AJ Sabat","year":"2013","journal-title":"Euro Surveill"},{"issue":"4","key":"ref26","doi-asserted-by":"crossref","first-page":"377","DOI":"10.1016\/S1473-3099(18)30132-4","article-title":"EUSeqMyTB to set standards and build capacity for whole genome sequencing for tuberculosis in the EU","volume":"18","author":"E Tagliani","year":"2018","journal-title":"Lancet Infect Dis"},{"issue":"5","key":"ref27","doi-asserted-by":"crossref","first-page":"594","DOI":"10.5588\/ijtld.13.0531","article-title":"Second worldwide proficiency study on variable number of tandem repeats typing of Mycobacterium tuberculosis complex","volume":"18","author":"JL de Beer","year":"2014","journal-title":"Int J Tuberc Lung Dis"},{"issue":"12","key":"ref28","doi-asserted-by":"crossref","first-page":"4040","DOI":"10.1128\/JCM.01916-13","article-title":"Mycobacterium tuberculosis outbreak strain of Danish origin spreading at worrying rates among greenland-born persons in Denmark and Greenland","volume":"51","author":"T Lillebaek","year":"2013","journal-title":"J Clin Microbiol"},{"issue":"8","key":"ref29","doi-asserted-by":"crossref","first-page":"2890","DOI":"10.1128\/JCM.00160-06","article-title":"Strain-specific differences in two large Mycobacterium tuberculosis genotype clusters in isolates collected from homeless patients in New York City from 2001 to 2004","volume":"44","author":"M Macaraig","year":"2006","journal-title":"J Clin Microbiol"},{"issue":"8","key":"ref30","doi-asserted-by":"crossref","first-page":"730","DOI":"10.1056\/NEJMoa1003176","article-title":"Whole-genome sequencing and social-network analysis of a tuberculosis outbreak","volume":"364","author":"JL Gardy","year":"2011","journal-title":"N Engl J Med"},{"issue":"12","key":"ref31","doi-asserted-by":"crossref","first-page":"e85027","DOI":"10.1371\/journal.pone.0085027","article-title":"Molecular epidemiology of tuberculosis in Finland, 2008\u20132011","volume":"8","author":"PW Smit","year":"2013","journal-title":"PloS one"},{"issue":"Suppl 1","key":"ref32","doi-asserted-by":"crossref","first-page":"S67","DOI":"10.1016\/S0954-6111(11)70014-2","article-title":"One year nationwide evaluation of 24-locus MIRU-VNTR genotyping on Slovenian Mycobacterium tuberculosis isolates","volume":"105","author":"U Bidovec-Stojkovic","year":"2011","journal-title":"Respiratory medicine"},{"issue":"4","key":"ref33","doi-asserted-by":"crossref","first-page":"e95159","DOI":"10.1371\/journal.pone.0095159","article-title":"Comparison between RFLP and MIRU-VNTR genotyping of Mycobacterium tuberculosis strains isolated in Stockholm 2009 to 2011","volume":"9","author":"J Jonsson","year":"2014","journal-title":"PloS one"},{"issue":"3","key":"ref34","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1056\/NEJMoa1604544","article-title":"Transmission of Extensively Drug-Resistant Tuberculosis in South Africa","volume":"376","author":"NS Shah","year":"2017","journal-title":"N Engl J Med"},{"key":"ref35","article-title":"Tuberculosis surveillance and monitoring in Europe, 2018","year":"2018"},{"key":"ref36","article-title":"The prospective evaluation of the TB strain typing service in England: a mixed methods study","author":"J Mears","year":"2015","journal-title":"Thorax"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"1023","DOI":"10.1186\/1471-2458-14-1023","article-title":"Prospective evaluation of a complex public health intervention: lessons from an initial and follow-up cross-sectional survey of the tuberculosis strain typing service in England","volume":"14","author":"J Mears","year":"2014","journal-title":"BMC public health"},{"issue":"12","key":"ref38","first-page":"S463","article-title":"Tuberculosis contact investigation and DNA fingerprint surveillance in The Netherlands: 6 years&apos; experience with nation-wide cluster feedback and cluster monitoring","volume":"7","author":"CS Lambregts-van Weezenbeek","year":"2003","journal-title":"The international journal of tuberculosis and lung disease: the official journal of the International Union against Tuberculosis and Lung Disease"},{"key":"ref39","doi-asserted-by":"crossref","first-page":"122","DOI":"10.1016\/j.ebiom.2018.07.019","article-title":"A Quantitative Evaluation of MIRU-VNTR Typing Against Whole-Genome Sequencing for Identifying Mycobacterium tuberculosis Transmission: A Prospective Observational Cohort Study","volume":"34","author":"DH Wyllie","year":"2018","journal-title":"EBioMedicine"},{"issue":"1","key":"ref40","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1016\/S2213-2600(15)00466-X","article-title":"Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study","volume":"4","author":"LJ Pankhurst","year":"2016","journal-title":"The Lancet Respiratory medicine"}],"container-title":["PLOS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0210080","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,9]],"date-time":"2020-05-09T04:26:36Z","timestamp":1588998396000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0210080"}},"subtitle":[],"editor":[{"given":"Igor","family":"Mokrousov","sequence":"first","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2019,3,13]]},"references-count":40,"journal-issue":{"issue":"3","published-online":{"date-parts":[[2019,3,13]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0210080","relation":{},"ISSN":["1932-6203"],"issn-type":[{"value":"1932-6203","type":"electronic"}],"subject":[],"published":{"date-parts":[[2019,3,13]]}}}