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It can be used along with many of fluorescence microscopy imaging techniques. By increasing axial resolution, it also enables three-dimensional imaging using a basic wide-field fluorescence microscope. Unfortunately, commercially available deconvolution software is expensive, while freely available programs have limited capabilities of a batch file processing. In this work we present <jats:italic>BatchDeconvolution<\/jats:italic>, a <jats:italic>Fiji<\/jats:italic> plugin that bridges two programs that we used subsequently in an image deconvolution pipeline: <jats:italic>PSF Generator<\/jats:italic> and <jats:italic>DeconvolutionLab2<\/jats:italic>, both from Biomedical Imaging Group, EPFL. Our software provides a simple way to perform a batch processing of multiple microscopy files with minimal working time required from the user.<\/jats:p>","DOI":"10.1515\/bams-2020-0027","type":"journal-article","created":{"date-parts":[[2020,9,11]],"date-time":"2020-09-11T06:00:01Z","timestamp":1599804001000},"source":"Crossref","is-referenced-by-count":3,"title":["<i>BatchDeconvolution<\/i>: a <i>Fiji<\/i> plugin for increasing deconvolution workflow"],"prefix":"10.5604","volume":"16","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-5987-5712","authenticated-orcid":false,"given":"Zbigniew","family":"Baster","sequence":"first","affiliation":[{"name":"Department of Molecular and Interfacial Biophysics , Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University , Krakow , Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Zenon","family":"Rajfur","sequence":"additional","affiliation":[{"name":"Department of Molecular and Interfacial Biophysics , Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University , Krakow , Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"3689","published-online":{"date-parts":[[2020,9,9]]},"reference":[{"key":"2023010916555962408_j_bams-2020-0027_ref_001_w2aab3b7c34b1b6b1ab2b2b1Aa","doi-asserted-by":"crossref","unstructured":"Drummen, G. 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