{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,4]],"date-time":"2026-07-04T02:16:17Z","timestamp":1783131377524,"version":"3.54.6"},"reference-count":91,"publisher":"Akademiai Kiado Zrt.","issue":"1","license":[{"start":{"date-parts":[[2024,4,10]],"date-time":"2024-04-10T00:00:00Z","timestamp":1712707200000},"content-version":"unspecified","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"name":"NIH","award":["R21 AT011813-01"],"award-info":[{"award-number":["R21 AT011813-01"]}]},{"name":"The Entheome Foundation"},{"name":"Tryp Labs"}],"content-domain":{"domain":["akjournals.com"],"crossmark-restriction":true},"short-container-title":["JPS"],"published-print":{"date-parts":[[2024,4,10]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p><jats:italic>Psilocybe zapotecorum<\/jats:italic> is a strongly blue-bruising psilocybin mushroom used by indigenous groups in southeastern Mexico and beyond. While this species has a rich history of ceremonial use, research into\u00a0its chemistry and genetics has been limited. Herein, we report on mushroom morphology, cultivation parameters, chemical profile, and the full genome sequence of <jats:italic>P. zapotecorum<\/jats:italic>. First,\u00a0we detail growth\u00a0and cloning methods that are simple, and reproducible. In combination with high resolution microscopic analysis, the strain was identified by DNA barcoding, confirming the field\u00a0identification. Full genome sequencing reveals the architecture of the psilocybin gene cluster in\u00a0<jats:italic>P.\u00a0zapotecorum,<\/jats:italic> and can serve as a reference genome for <jats:italic>Psilocybe<\/jats:italic> clade I. Characterization of\u00a0the\u00a0tryptamine profile revealed a psilocybin concentration of 17.9 \u00b1 1.7\u2009mg\/g, with a range of 10.6\u201325.7\u2009mg\/g (<jats:italic>n<\/jats:italic> = 7), and similar tryptamines (psilocin, baeocystin, norbaeocystin, norpsilocin, aeruginascin, and 4-HO-tryptamine) in lesser concentrations for a combined tryptamine concentration of 22.5 \u00b1 3.2\u2009mg\/g. These results show <jats:italic>P. zapotecorum<\/jats:italic> to be a potent and chemically variable <jats:italic>Psilocybe<\/jats:italic> mushroom. Chemical profiling, genetic analysis, and cultivation assist in demystifying these mushrooms. As clinical studies with psilocybin gain traction, understanding the diversity of <jats:italic>Psilocybe<\/jats:italic> expands the conversation beyond the molecule.<\/jats:p>","DOI":"10.1556\/2054.2023.00332","type":"journal-article","created":{"date-parts":[[2024,4,5]],"date-time":"2024-04-05T13:00:21Z","timestamp":1712322021000},"page":"63-81","update-policy":"https:\/\/doi.org\/10.1556\/policypage.crossmark.crossref.2","source":"Crossref","is-referenced-by-count":6,"title":["Cultivation, chemistry, and genome of Psilocybe zapotecorum"],"prefix":"10.1556","volume":"8","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-2376-4543","authenticated-orcid":true,"given":"Dusty Rose","family":"Miller","sequence":"first","affiliation":[{"name":"Department of Chemistry, Vanderbilt University, Nashville, TN 37235-1822, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jordan Taylor","family":"Jacobs","sequence":"additional","affiliation":[{"name":"Tryp Labs LLC, 534 SW 3rd Avenue, Suite 808, Portland, OR 97204, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alan","family":"Rockefeller","sequence":"additional","affiliation":[{"name":"The Entheome Foundation, 1721 Broadway #201, Oakland, CA 94612, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Harte","family":"Singer","sequence":"additional","affiliation":[{"name":"The Entheome Foundation, 1721 Broadway #201, Oakland, CA 94612, USA"},{"name":"Dikarya LLC, 1530 Hughes Avenue, Santa Rosa, CA 95407, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ian M.","family":"Bollinger","sequence":"additional","affiliation":[{"name":"The Entheome Foundation, 1721 Broadway #201, Oakland, CA 94612, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"James","family":"Conway","sequence":"additional","affiliation":[{"name":"Tryp Labs LLC, 534 SW 3rd Avenue, Suite 808, Portland, OR 97204, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jason C.","family":"Slot","sequence":"additional","affiliation":[{"name":"The Entheome Foundation, 1721 Broadway #201, Oakland, CA 94612, USA"},{"name":"Department of Plant Pathology, Ohio State University, Columbus, OH, 43210, USA"},{"name":"Center for Psychedelic Drug Research and Education, Ohio State University, Columbus, OH, 43210, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"David E.","family":"Cliffel","sequence":"additional","affiliation":[{"name":"Department of Chemistry, Vanderbilt University, Nashville, TN 37235-1822, USA"},{"name":"Vanderbilt Institute for Integrative Biosystems Research and Education, Vanderbilt University, Nashville, TN 37235-1809, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"425","reference":[{"key":"B1","series-title":"Oregon psilocybin advisory board rapid evidence review and recommendations","author":"Abbas, A. 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Miami University."},{"issue":"4","key":"B4","series-title":"Molecular Ecology","first-page":"800","article-title":"Whole genome resequencing identifies local adaptation associated with environmental variation for redband trout","volume":"32","author":"Andrews, K. R.","year":"2023","unstructured":"Andrews, K. R., Seaborn, T., Egan, J. P., Fagnan, M. W., New, D. D., Chen, Z., et\u00a0al. (2023). Whole genome resequencing identifies local adaptation associated with environmental variation for redband trout. Molecular Ecology, 32(4), 800\u2013818."},{"key":"B5","series-title":"Journal of Psychopharmacology","first-page":"1182","article-title":"Validation of the revised Mystical Experience Questionnaire in experimental sessions with psilocybin","volume":"11","author":"Barrett, F.","year":"2015","unstructured":"Barrett, F., & Griffiths, R. (2015). Validation of the revised Mystical Experience Questionnaire in experimental sessions with psilocybin. Journal of Psychopharmacology, 11, 1182\u20131190. https:\/\/doi.org\/10.1177\/0269881115609019."},{"issue":"3","key":"B6","series-title":"Journal of Ethnopharmacology","first-page":"287","article-title":"Variation of psilocybin and psilocin levels with repeated flushes (harvests) of mature sporocarps of Psilocybe cubensis (earle) singer","volume":"5","author":"Bigwood, J.","year":"1982","unstructured":"Bigwood, J., & Beug, M. W. (1982). Variation of psilocybin and psilocin levels with repeated flushes (harvests) of mature sporocarps of Psilocybe cubensis (earle) singer. 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C., & Hoffmeister, D. (2018). Iterative l-tryptophan methylation in psilocybe evolved by subdomain duplication. ChemBioChem, 19(20), 2160\u20132166."},{"issue":"10","key":"B9","series-title":"JAMA Psychiatry","first-page":"953","article-title":"Percentage of heavy drinking days following psilocybin-assisted psychotherapy vs placebo in the treatment of adult patients with alcohol use disorder: A randomized clinical trial","volume":"79","author":"Bogenschutz, M. P.","year":"2022","unstructured":"Bogenschutz, M. P., Ross, S., Bhatt, S., Baron, T., Forcehimes, A. A., Laska, E., et\u00a0al. (2022). Percentage of heavy drinking days following psilocybin-assisted psychotherapy vs placebo in the treatment of adult patients with alcohol use disorder: A randomized clinical trial. JAMA Psychiatry, 79(10), 953\u2013962."},{"issue":"15","key":"B10","series-title":"Bioinformatics","first-page":"2114","article-title":"Trimmomatic: A flexible trimmer for Illumina sequence data","volume":"30","author":"Bolger, A. M.","year":"2014","unstructured":"Bolger, A. M., Lohse, M., & Usadel, B. (2014). Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics, 30(15), 2114\u20132120."},{"issue":"1","key":"B11","series-title":"Persoonia-Molecular Phylogeny and Evolution of Fungi","first-page":"1","article-title":"Phylogenetic and chemical studies in the potential psychotropic species complex of Psilocybe atrobrunnea with taxonomic and nomenclatural notes","volume":"34","author":"Borovi\u010dka, J.","year":"2015","unstructured":"Borovi\u010dka, J., Oborn\u00edk, M., St\u0159\u00edbrn\u1ef3, J., Noordeloos, M. E., S\u00e1nchez, L. A., & Gryndler, M. (2015). Phylogenetic and chemical studies in the potential psychotropic species complex of Psilocybe atrobrunnea with taxonomic and nomenclatural notes. Persoonia-Molecular Phylogeny and Evolution of Fungi, 34(1), 1\u20139."},{"issue":"24","key":"B12","series-title":"Applied and Environmental Microbiology","first-page":"e01498-22","article-title":"DNA authentication and chemical analysis of psilocybe mushrooms reveal widespread Misdeterminations in Fungaria and inconsistencies in metabolites","volume":"88","author":"Bradshaw, A. J.","year":"2022","unstructured":"Bradshaw, A. J., Backman, T. A., Ram\u00edrez-Cruz, V., Forrister, D. L., Winter, J. M., Guzm\u00e1n-D\u00e1valos, L., et\u00a0al. (2022). DNA authentication and chemical analysis of psilocybe mushrooms reveal widespread Misdeterminations in Fungaria and inconsistencies in metabolites. Applied and Environmental Microbiology, 88(24), e01498-22. https:\/\/doi.org\/10.1128\/aem.01498-22."},{"key":"B13","series-title":"bioRxiv","first-page":"2022","article-title":"Phylogenomics of the psychoactive mushroom genus Psilocybe and evolution of the psilocybin biosynthetic gene cluster","author":"Bradshaw, A. J.","year":"2022","unstructured":"Bradshaw, A. J., Ramirez-Cruz, V., Awan, A. R., Furci, G., Guzman-Davalos, L., Stamets, P., et\u00a0al. (2022). Phylogenomics of the psychoactive mushroom genus Psilocybe and evolution of the psilocybin biosynthetic gene cluster. bioRxiv, 2022\u20132112."},{"key":"B14","author":"BUSCO Fungi","year":"n.d","unstructured":"BUSCO Fungi (n.d.). 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ChemBioChem, 23(14), e202200249. https:\/\/doi.org\/10.1002\/cbic.202200249."},{"issue":"1","key":"B19","series-title":"BMC Bioinformatics","first-page":"1","article-title":"Muscle: A multiple sequence alignment method with reduced time and space complexity","volume":"5","author":"Edgar, R. C.","year":"2004a","unstructured":"Edgar, R. C. (2004a). Muscle: A multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics, 5(1), 1\u201319."},{"issue":"5","key":"B20","series-title":"Nucleic Acids Research","first-page":"1792","article-title":"Muscle: Multiple sequence alignment with high accuracy and high throughput","volume":"32","author":"Edgar, R. C.","year":"2004b","unstructured":"Edgar, R. C. (2004b). Muscle: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32(5), 1792\u20131797."},{"key":"B21","series-title":"Journal of Affective Disorders","first-page":"47","article-title":"The need for establishing best practices and gold standards in psychedelic medicine","volume":"332","author":"Feduccia, A.","year":"2023","unstructured":"Feduccia, A., Agin-Liebes, G., Price, C. M., Grinsell, N., Paradise, S., & Rabin, D. M. (2023). The need for establishing best practices and gold standards in psychedelic medicine. Journal of Affective Disorders, 332, 47\u201354."},{"issue":"40","key":"B22","series-title":"Angewandte Chemie International Edition","first-page":"12352","article-title":"Enzymatic synthesis of psilocybin","volume":"56","author":"Fricke, J.","year":"2017","unstructured":"Fricke, J., Blei, F., & Hoffmeister, D. (2017). Enzymatic synthesis of psilocybin. Angewandte Chemie International Edition, 56(40), 12352\u201312355."},{"key":"B23","series-title":"Hallucinogens in Precolumbian art","author":"Furst, P. T.","year":"1974","unstructured":"Furst, P. T. (1974). Hallucinogens in Precolumbian art. Texas Tech Press."},{"issue":"2","key":"B24","series-title":"Molecular Ecology","first-page":"113","article-title":"ITS primers with enhanced specificity for basidiomycetes \u2010 application to the identification of mycorrhizae and rusts","volume":"2","author":"Gardes, M.","year":"1993","unstructured":"Gardes, M., & Bruns, T. D. (1993). ITS primers with enhanced specificity for basidiomycetes \u2010 application to the identification of mycorrhizae and rusts. Molecular Ecology, 2(2), 113\u2013118. https:\/\/doi.org\/10.1111\/j.1365-294X.1993.tb00005.x."},{"key":"B25","series-title":"Bioinformatics","article-title":"Automatic generation of gene cluster comparison figures","author":"Gilchrist, C. L. M.","year":"2020","unstructured":"Gilchrist, C. L. M., & Chooi, Y. H. (2020). Automatic generation of gene cluster comparison figures. Bioinformatics, 10."},{"issue":"11","key":"B26","series-title":"ACS Pharmacology & Translational Science","first-page":"1181","article-title":"Structure\u2013activity relationships for psilocybin, baeocystin, aeruginascin, and related analogues to produce pharmacological effects in mice","volume":"5","author":"Glatfelter, G. C.","year":"2022","unstructured":"Glatfelter, G. C., Pottie, E., Partilla, J. S., Sherwood, A. M., Kaylo, K., Pham, D. N. K., et\u00a0al. (2022). Structure\u2013activity relationships for psilocybin, baeocystin, aeruginascin, and related analogues to produce pharmacological effects in mice. 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International Journal of Molecular Sciences, 23(22), 14068. https:\/\/doi.org\/10.3390\/ijms232214068."},{"issue":"2","key":"B29","series-title":"Drug Testing and Analysis","first-page":"439","article-title":"Stability of psilocybin and its four analogs in the biomass of the psychotropic mushroom Psilocybe cubensis","volume":"13","author":"Gotvaldov\u00e1, K.","year":"2021","unstructured":"Gotvaldov\u00e1, K., H\u00e1jkov\u00e1, K., Borovi\u010dka, J., Jurok, R., Cihl\u00e1\u0159ov\u00e1, P., & Kucha\u0159, M. (2021). Stability of psilocybin and its four analogs in the biomass of the psychotropic mushroom Psilocybe cubensis. Drug Testing and Analysis, 13(2), 439\u2013446."},{"issue":"6","key":"B30","series-title":"Expert Review of Clinical Pharmacology","first-page":"655","article-title":"Integrating psychotherapy and psychopharmacology: Psychedelic-assisted psychotherapy and other combined treatments","volume":"13","author":"Greenway, K. T.","year":"2020","unstructured":"Greenway, K. 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Nova Hedwigia, 74, 439."},{"key":"B36","series-title":"Taxonomic Monographs of Agaricales. Bibliotheca Mycologica","first-page":"91","article-title":"Supplement to the monograph of the genus Psilocybe","volume":"159","author":"Guzm\u00e1n, G.","year":"1995","unstructured":"Guzm\u00e1n, G. (1995). Supplement to the monograph of the genus Psilocybe. Taxonomic Monographs of Agaricales. Bibliotheca Mycologica, 159, 91\u2013141."},{"key":"B37","series-title":"Acta Bot\u00e1nica Mexicana","article-title":"New taxonomical and ethnomycological observations on psilocybe s.s. (fungi, basidiomycota, Agaricomycetidae, agaricales, Strophariaceae) from Mexico, Africa and Spain","volume":"100","author":"Guzm\u00e1n, G.","year":"2012","unstructured":"Guzm\u00e1n, G. (2012). New taxonomical and ethnomycological observations on psilocybe s.s. (fungi, basidiomycota, Agaricomycetidae, agaricales, Strophariaceae) from Mexico, Africa and Spain. Acta Bot\u00e1nica Mexicana, 100."},{"key":"B38","series-title":"Les champignons divinatoires recueillis par Mme Valentina Pavlovna Wasson et M. R. Gordon Wasson au cours de leurs missions de 1954 et 1955 dans les pays mije, mazat\u00e8que, zapot\u00e8que et nahua du Mexique m\u00e9ridional et central","author":"Heim, R.","year":"1956","unstructured":"Heim, R. (1956). Les champignons divinatoires recueillis par Mme Valentina Pavlovna Wasson et M. R. Gordon Wasson au cours de leurs missions de 1954 et 1955 dans les pays mije, mazat\u00e8que, zapot\u00e8que et nahua du Mexique m\u00e9ridional et central. Gauthier-Villars."},{"key":"B39","series-title":"Rend. S\u00e9ances Acad. Sci., Paris","first-page":"695","article-title":"Les agarics hallucinog\u00e8nes du genre Psilocybe recueillis au cours de notre r\u00e9cente mission dans le Mexique m\u00e9ridional et central en compagnie de M. R. Gordon Wasson","volume":"244","author":"Heim, R.","year":"1957a","unstructured":"Heim, R. (1957a). 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