{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,21]],"date-time":"2026-02-21T07:11:56Z","timestamp":1771657916623,"version":"3.50.1"},"reference-count":40,"publisher":"Zhejiang University Press","issue":"11","license":[{"start":{"date-parts":[[2025,11,1]],"date-time":"2025-11-01T00:00:00Z","timestamp":1761955200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2025,11,1]],"date-time":"2025-11-01T00:00:00Z","timestamp":1761955200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Front Inform Technol Electron Eng"],"published-print":{"date-parts":[[2025,11]]},"DOI":"10.1631\/fitee.2400941","type":"journal-article","created":{"date-parts":[[2025,12,3]],"date-time":"2025-12-03T02:28:39Z","timestamp":1764728919000},"page":"2215-2230","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Vina-FPGA2: a high-level parallelized hardware-accelerated molecular docking tool based on the inter-module pipeline"],"prefix":"10.1631","volume":"26","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-8866-7189","authenticated-orcid":false,"given":"Ming","family":"Ling","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shidi","family":"Tang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6837-5675","authenticated-orcid":false,"given":"Ruiqi","family":"Chen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xin","family":"Li","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yanxiang","family":"Zhu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"635","published-online":{"date-parts":[[2025,12,3]]},"reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv082"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1109\/mcse.2009.11"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/28.1.235"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1080\/17460441.2021.1858793"},{"issue":"1","key":"ref5","first-page":"2799","article-title":"RNAmigos2: accelerated structure-based RNA virtual screening with deep graph learning","volume-title":"Nat Commun","volume":"16","author":"Carvajal-Pati\u00f1o","year":"2025"},{"issue":"43","key":"ref6","first-page":"1029","article-title":"A review on molecular docking: novel tool for drug discovery","volume-title":"JSM Chem","volume":"4","author":"Chaudhary","year":"2016"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1016\/j.tips.2014.12.001"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1145\/3294054"},{"key":"ref9","first-page":"1","article-title":"DiffDock: diffusion steps, twists, and turns for molecular docking","author":"Corso","year":"2023","journal-title":"Proc 11th Int Conf on Learning Representations"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.2c01504"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.8b00312"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1002\/pro.3934"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-020-2117-z"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1109\/tcbb.2012.82"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1021\/jm061277y"},{"issue":"1","key":"ref16","first-page":"15451","article-title":"Protein-ligand blind docking using QuickVina-W with inter-process spatiotemporal integration","volume-title":"Sci Rep","volume":"7","author":"Hassan","year":"2017"},{"issue":"1","key":"ref17","first-page":"5163","article-title":"Highly accurate carbohydrate-binding site prediction with DeepGlycan-Site","volume-title":"Nat Commun","volume":"15","author":"He","year":"2024"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1145\/1146909.1147058"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1126\/science.220.4598.671"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1109\/tvlsi.2022.3217275"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1109\/tbcas.2024.3388323"},{"issue":"1","key":"ref22","first-page":"43","article-title":"GNINA 1.0: molecular docking with deep learning","volume-title":"J Chemin-form","volume":"13","author":"McNutt","year":"2021"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.21787"},{"issue":"4","key":"ref24","first-page":"1109","article-title":"A survey of FPGA-based accelerators for convolutional neural networks","volume-title":"Neur Comput Appl","volume":"32","author":"Mittal","year":"2020"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.2174\/1570180819666220922103109"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1109\/fpl.2011.93"},{"key":"ref27","first-page":"1","article-title":"FPGA-based acceleration of the AutoDock molecular docking software","author":"Pechan","year":"2010","journal-title":"Proc 6th Conf on Ph.D. Research in Microelectronics & Electronics"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.3389\/fphar.2018.00923"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jctc.0c01006"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1109\/access.2018.2890150"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1145\/3078155.3078167"},{"key":"ref32","first-page":"1","article-title":"A case study in using OpenCL on FPGAs: creating an open-source accelerator of the AutoDock molecular docking software","volume-title":"Proc 5th Int Workshop on FPGAs for Software Programmers","author":"Solis-Vasquez","year":"2018"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1109\/ia351965.2020.00008"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.8b00545"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.3390\/molecules27093041"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.21334"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1016\/j.csbj.2024.05.024"},{"key":"ref38","volume-title":"Xilinx Power Estimator (XPE)","year":"2023"},{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1145\/3626202.3637562"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1109\/tcbb.2023.3323552"}],"container-title":["Frontiers of Information Technology &amp; Electronic Engineering"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1631\/FITEE.2400941.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1631\/FITEE.2400941","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1631\/FITEE.2400941.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,2,21]],"date-time":"2026-02-21T06:42:03Z","timestamp":1771656123000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1631\/FITEE.2400941"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,11]]},"references-count":40,"journal-issue":{"issue":"11","published-print":{"date-parts":[[2025,11]]}},"alternative-id":["2121"],"URL":"https:\/\/doi.org\/10.1631\/fitee.2400941","relation":{},"ISSN":["2095-9184","2095-9230"],"issn-type":[{"value":"2095-9184","type":"print"},{"value":"2095-9230","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,11]]},"assertion":[{"value":"22 October 2024","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"28 September 2025","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"3 December 2025","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"All the authors declare that they have no conflict of interest.","order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}}]}}