{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,19]],"date-time":"2026-10-19T06:46:37Z","timestamp":1792392397150,"version":"4.4.0"},"reference-count":86,"publisher":"Institute of Cytology and Genetics, SB RAS","issue":"6","license":[{"start":{"date-parts":[[2026,10,13]],"date-time":"2026-10-13T00:00:00Z","timestamp":1791849600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/vavilov.elpub.ru\/jour\/about\/editorialPolicies#openAccessPolicy"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Vestn. VOGiS"],"abstract":"<jats:p>\n                    Age is the primary risk factor for age-related diseases, the early onset of which manifests as premature aging, whereas delayed development forms the basis for healthy aging and longevity. Adverse genetic variants contribute to premature aging and its diverse manifestations, including increased multimorbidity. Identifying the genetic underpinnings of premature aging and developing preventive approaches are essential to extending the human healthspan, which requires fundamental research using animal models. In this study, we performed whole-genome sequencing (coverage depth &gt;25\u00d7) of OXYS rats \u2013 a unique model of premature aging characterized by the early onset of geriatric disorders, including cataracts, AMD-like retinopathy, Alzheimer\u2019s disease-like pathology, osteoporosis, sarcopenia, and hypertrophic cardiomyopathy \u2013 using the parental Wistar\/Icgn rat strain as a control. The screening for singlenucleotide variants (SNVs), short insertions\/deletions (indels), and copy number variations (CNVs) and comparative genomic analysis revealed genetic variants unique to OXYS rats that are absent in other rat strains. Specifically, we identified a large deletion in the\n                    <jats:italic>Fat1<\/jats:italic>\n                    enhancer, deletions in the promoter regions of\n                    <jats:italic>Abcf1<\/jats:italic>\n                    and\n                    <jats:italic>Gsta6<\/jats:italic>\n                    , and missense variants in\n                    <jats:italic>Cic<\/jats:italic>\n                    ,\n                    <jats:italic>Akap6<\/jats:italic>\n                    ,\n                    <jats:italic>Nqo2<\/jats:italic>\n                    ,\n                    <jats:italic>Cerkl<\/jats:italic>\n                    ,\n                    <jats:italic>Bfsp1<\/jats:italic>\n                    , and\n                    <jats:italic>Cmya5<\/jats:italic>\n                    that lead to amino acid substitutions in highly conserved protein regions. Bioinformatic analysis suggested that these variants may contribute to the key features of premature aging in OXYS rats. Notably, deletions in the\n                    <jats:italic>Fat1<\/jats:italic>\n                    enhancer and\n                    <jats:italic>Gsta6<\/jats:italic>\n                    promoter, alongside missense substitutions in\n                    <jats:italic>Cic<\/jats:italic>\n                    ,\n                    <jats:italic>Akap6<\/jats:italic>\n                    , and\n                    <jats:italic>Nqo2<\/jats:italic>\n                    , may drive early neurodegeneration and cognitive deficits by disrupting neurogenesis, reducing neuronal survival, and impairing antioxidant defense. The deletion in the\n                    <jats:italic>Abcf1<\/jats:italic>\n                    promoter and the missense variants in\n                    <jats:italic>Cerkl<\/jats:italic>\n                    may induce retinopathy features by disrupting retinal homeostasis and weakening the protection of photoreceptors and retinal pigment epithelium (RPE) cells against oxidative stress and apoptosis. Furthermore, the missense substitution in\n                    <jats:italic>Bfsp1<\/jats:italic>\n                    likely contributes to early cataract development by reducing the stability of lens intermediate filaments. Finally, missense variants in\n                    <jats:italic>Cmya5<\/jats:italic>\n                    and\n                    <jats:italic>Akap6<\/jats:italic>\n                    may promote sarcopenia and cardiomyopathy via the destabilization of myofibrils in skeletal muscles and cardiomyocytes (\n                    <jats:italic>Cmya5<\/jats:italic>\n                    ) and through impaired skeletal muscle regeneration and structural disorganization of cardiomyocytes (\n                    <jats:italic>Akap6<\/jats:italic>\n                    ).\n                  <\/jats:p>","DOI":"10.18699\/vjgb-26-90","type":"journal-article","created":{"date-parts":[[2026,10,15]],"date-time":"2026-10-15T13:52:28Z","timestamp":1792072348000},"page":"883-898","source":"Crossref","is-referenced-by-count":0,"title":["Whole genome sequencing identifies genetic variants associated with senescence-accelerated phenotype of OXYS rats"],"prefix":"10.18699","volume":"30","author":[{"given":"V. M.","family":"Petrova","sequence":"first","affiliation":[{"name":"Sirius University of Science and Technology"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M. S.","family":"Protasova","sequence":"additional","affiliation":[{"name":"Sirius University of Science and Technology"},{"name":"Vavilov Institute of General Genetics of the Russian Academy of Sciences"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"A. D.","family":"Manakhov","sequence":"additional","affiliation":[{"name":"Sirius University of Science and Technology"},{"name":"Vavilov Institute of General Genetics of the Russian Academy of Sciences"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"N. A.","family":"Stefanova","sequence":"additional","affiliation":[{"name":"Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"N. G.","family":"Kolosova","sequence":"additional","affiliation":[{"name":"Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"E. I.","family":"Rogaev","sequence":"additional","affiliation":[{"name":"UMass Chan Medical School, Department of Psychiatry"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"7950","published-online":{"date-parts":[[2026,10,13]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","unstructured":"Abramson J., Adler J., Dunger J., Evans R., Green T., Pritzel A., Ronneberger O., \u2026 Bapst V., Kohli P., Jaderberg M., Hassabis D., Jumper J.M. Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature. 2024;630(8016):493-500. doi 10.1038\/s41586-024-07487-w","DOI":"10.1038\/s41586-024-07487-w"},{"key":"ref2","doi-asserted-by":"crossref","unstructured":"Abyzov A., Urban A.E., Snyder M., Gerstein M. 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