{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"institution":[{"name":"Research Square"}],"indexed":{"date-parts":[[2026,4,4]],"date-time":"2026-04-04T20:43:48Z","timestamp":1775335428045,"version":"3.50.1"},"posted":{"date-parts":[[2025,11,24]]},"group-title":"In Review","reference-count":38,"publisher":"Springer Science and Business Media LLC","license":[{"start":{"date-parts":[[2025,11,24]],"date-time":"2025-11-24T00:00:00Z","timestamp":1763942400000},"content-version":"unspecified","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"accepted":{"date-parts":[[2025,10,27]]},"abstract":"<title>Abstract<\/title>\n                <p>In large-scale biodiversity genomics projects, the number of species that could be sequenced exceeds the resources available. Species selection is therefore a crucial component, requiring clear criteria and procedures. In a bottom-up approach, the Biodiversity Genomics Europe project implemented an Automated Decision-Making (ADM) process for species selection based on objective criteria and tested it on simulated and empirical data. Here, we present our species ranking ADM process. It includes three stages: exclusion, ranking, and feasibility-check. The composition of selected species retained the diversity of the community-nominated species pool for key taxonomic, geographic, and demographic assessment criteria while reducing bias. Feasibility and funding limits influenced the final selection more than other factors, indicating that investments in these areas would improve available reference genome diversity. The ADM achieved species selection for genome sequencing in a large-scale biodiversity project in a relatively objective manner consistent with the broader European biodiversity genomic community\u2019s priorities.<\/p>","DOI":"10.21203\/rs.3.rs-7957242\/v1","type":"posted-content","created":{"date-parts":[[2025,11,24]],"date-time":"2025-11-24T07:40:18Z","timestamp":1763970018000},"source":"Crossref","is-referenced-by-count":1,"title":["An automated decision-making procedure for ranking and selecting species in biodiversity projects"],"prefix":"10.21203","author":[{"given":"Torsten H.","family":"Struck","sequence":"first","affiliation":[{"name":"University of Oslo"}]},{"given":"Thomas","family":"Marcussen","sequence":"additional","affiliation":[{"name":"University of Oslo"}]},{"given":"Astrid","family":"B\u00f6hne","sequence":"additional","affiliation":[{"name":"Leibniz Institute for the Analysis of Biodiversity Change, Museum Koenig Bonn"}]},{"given":"Rosa","family":"Fern\u00e1ndez","sequence":"additional","affiliation":[{"name":"Spanish National Research Council - Pompeu Fabra University"}]},{"given":"Jos\u00e9","family":"Melo-Ferreira","sequence":"additional","affiliation":[{"name":"CIBIO, Universidade do Porto"}]},{"given":"Isabelle","family":"Florent","sequence":"additional","affiliation":[{"name":"UMR7245, National Museum of Natural History and CNRS"}]},{"given":"Carmela","family":"Gissi","sequence":"additional","affiliation":[{"name":"Universit\u00e0 degli Studi di Bari \u201cAldo Moro\u201d"}]},{"given":"Christian","family":"Guttry","sequence":"additional","affiliation":[{"name":"SIB Swiss Institute of Bioinformatics, UNIL-Sorge"}]},{"given":"Jennifer A.","family":"Leonard","sequence":"additional","affiliation":[{"name":"Estaci\u00f3n Biol\u00f3gica de Do\u00f1ana (EBD-CSIC)"}]},{"given":"Seanna","family":"McTaggart","sequence":"additional","affiliation":[{"name":"Earlham Institute"}]},{"given":"Camila","family":"Mazzoni","sequence":"additional","affiliation":[{"name":"Leibniz Institute for Zoo- and Wildlife Research (IZW)"}]},{"given":"Rita","family":"Monteiro","sequence":"additional","affiliation":[{"name":"Leibniz Institute for the Analysis of Biodiversity Change, Museum Koenig Bonn"}]},{"given":"Olga Vinnere","family":"Pettersson","sequence":"additional","affiliation":[{"name":"National Genomics Infrastructure, Uppsala University"}]},{"given":"Jo\u00e3o","family":"Pimenta","sequence":"additional","affiliation":[{"name":"CIBIO, Universidade do Porto"}]},{"given":"Jaakko","family":"Pohjoism\u00e4ki","sequence":"additional","affiliation":[{"name":"University of Eastern Finland"}]},{"given":"Katja","family":"Reichel","sequence":"additional","affiliation":[{"name":"Freie Universit\u00e4t Berlin"}]},{"given":"Andrii","family":"Tarieiev","sequence":"additional","affiliation":[{"name":"Martin Luther University Halle-Wittenberg"}]},{"given":"Rebekah A.","family":"Oomen","sequence":"additional","affiliation":[{"name":"University of Oslo"}]}],"member":"297","reference":[{"key":"ref1","doi-asserted-by":"publisher","first-page":"737","DOI":"10.1038\/s41586-021-03451-0","article-title":"Towards complete and error-free genome assemblies of all vertebrate species","volume":"592","author":"Rhie A","year":"2021","unstructured":"Rhie, A. et al. 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