{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,16]],"date-time":"2026-10-16T08:45:49Z","timestamp":1792140349732,"version":"4.4.0"},"reference-count":61,"publisher":"JMIR Publications Inc.","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["JMIR Med Inform"],"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec sec-type=\"background\">\n                    <jats:title>Background<\/jats:title>\n                    <jats:p>Due to the heterogeneity of symptom terminology and the lack of industry standards, the same symptom is often described using multiple expressions. Current normalization approaches struggle to comprehensively retrieve standard terms when a raw term maps to multiple symptoms.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec sec-type=\"objective\">\n                    <jats:title>Objective<\/jats:title>\n                    <jats:p>This study aimed to address the lack of industry standards for traditional Chinese medicine (TCM) symptom terminology. This study proposed the split-then-concatenate normalization framework (STC-NF), a novel approach based on fine-grained semantic classification and a 2-stage deep learning architecture that uses electronic medical records (EMRs) as the data source.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec sec-type=\"methods\">\n                    <jats:title>Methods<\/jats:title>\n                    <jats:p>This study proposed a 2-stage deep learning framework, \u201csplit-then-concatenate.\u201d In the splitting stage, TCM symptom entities were categorized into 12 fine-grained semantic labels, and 3 named entity recognition (NER) models were trained to extract TCM symptom terminology from EMRs. In the concatenation stage, standard terms with the same concept as raw terms were identified using a Bidirectional Encoder Representations from Transformers (BERT)\u2013based binary classification model. The standard terms with specific semantic labels were concatenated and reordered according to predefined rules to output structured text, thereby normalizing TCM symptom terminology.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec sec-type=\"results\">\n                    <jats:title>Results<\/jats:title>\n                    <jats:p>\n                      The proposed STC-NF model achieved an accuracy of 91.4% (180\/197) and an\n                      <jats:italic>F<\/jats:italic>\n                      <jats:sub>1<\/jats:sub>\n                      -score of 360 out of 389 (92.5%) on the single-implication test set. For multi-implication terms, STC-NF achieved an accuracy of 84.3% (311\/369) and an\n                      <jats:italic>F<\/jats:italic>\n                      <jats:sub>1<\/jats:sub>\n                      -score of 1958 out of 2316 (84.5%), outperforming sequence generation in accuracy by 33.1 percentage points. On the mixed test set containing both single- and multi-implication terms, STC-NF achieved an accuracy of 88.1% (990\/1124) and an\n                      <jats:italic>F<\/jats:italic>\n                      <jats:sub>1<\/jats:sub>\n                      -score of 3862 out of 4385 (88.1%), exceeding the best-performing baseline model, multi-task candidate generator (MTCG), by 16.7 and 22.2 percentage points in accuracy and\n                      <jats:italic>F<\/jats:italic>\n                      <jats:sub>1<\/jats:sub>\n                      -score, respectively.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec sec-type=\"conclusions\">\n                    <jats:title>Conclusions<\/jats:title>\n                    <jats:p>In this study, we verified that the fine-grained semantic classification and the 2-stage \u201csplit-then-concatenate\u201d framework effectively improved performance of named entity recognition and entity alignment, providing an improved approach to normalizing TCM symptom terminology.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.2196\/85825","type":"journal-article","created":{"date-parts":[[2026,9,25]],"date-time":"2026-09-25T18:24:27Z","timestamp":1790360667000},"page":"e85825-e85825","source":"Crossref","is-referenced-by-count":1,"title":["Symptom Terminology Normalization in Traditional Chinese Medicine: Development and Evaluation of a 2-Stage Deep Learning Framework Based on Fine-Grained Semantic Classification"],"prefix":"10.2196","volume":"14","author":[{"ORCID":"https:\/\/orcid.org\/0009-0009-5273-3410","authenticated-orcid":false,"given":"Junyu","family":"Yao","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0007-6380-0231","authenticated-orcid":false,"given":"Xingyue","family":"Gou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0000-9491-4249","authenticated-orcid":false,"given":"Wei","family":"Lai","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0003-3467-1662","authenticated-orcid":false,"given":"Yuzhu","family":"Gao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0008-1648-1669","authenticated-orcid":false,"given":"Siqi","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0006-4619-2038","authenticated-orcid":false,"given":"Chuangan","family":"Zhou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0193-780X","authenticated-orcid":false,"given":"Hui","family":"Ye","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0002-9047-5650","authenticated-orcid":false,"given":"Jing","family":"Tian","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0003-2093-9779","authenticated-orcid":false,"given":"Jun","family":"Yi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1563-1983","authenticated-orcid":false,"given":"Dong","family":"Cao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1010","published-online":{"date-parts":[[2026,9,25]]},"reference":[{"issue":"3","key":"R1","doi-asserted-by":"publisher","first-page":"647","DOI":"10.1142\/S0192415X25500259","article-title":"Advancements in artificial intelligence-driven diagnostic models for traditional Chinese medicine","volume":"53","author":"Wang","journal-title":"Am J Chin Med"},{"issue":"4","key":"R2","doi-asserted-by":"publisher","first-page":"174","DOI":"10.1097\/gscm.0000000000000035","article-title":"Research progress on knowledge discovery in traditional Chinese medicine medical records based on artificial intelligence","volume":"2","author":"Tang","journal-title":"Guidelines Stand Chin Med"},{"key":"R3","doi-asserted-by":"publisher","DOI":"10.1016\/j.phymed.2024.155486","article-title":"TCMSSD: a comprehensive database focused on syndrome standardization","volume":"128","author":"Huang","journal-title":"Phytomedicine"},{"issue":"1","key":"R4","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1097\/gscm.0000000000000052","article-title":"Status quo, problem, and prospect for traditional Chinese medicine international terminology standards","volume":"3","author":"Song","journal-title":"Guidelines Stand Chin Med"},{"issue":"5-06","key":"R5","doi-asserted-by":"publisher","first-page":"164","DOI":"10.1055\/a-2576-1847","article-title":"ISPO: an integrated ontology of symptom phenotypes for semantic integration of traditional Chinese medical data","volume":"63","author":"Shu","journal-title":"Methods Inf Med"},{"key":"R6","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2021.103718","article-title":"Traditional Chinese medicine symptom normalization approach leveraging hierarchical semantic information and text matching with attention mechanism","volume":"116","author":"Jia","journal-title":"J Biomed Inform"},{"key":"R7","doi-asserted-by":"crossref","unstructured":"Zhan Y Zhang D Jia Q Xu H Xie Y . Automated methods for symptom normalization in traditional Chinese medicine records. In: Sun X Zhang X Xia Z Bertino E , editors. Advances in Artificial Intelligence and Security. ICAIS 2021. Communications in Computer and Information Science. Vol 1422. Springer; 2021:476-487. [doi: 10.1007\/978-3-030-78615-1_42]","DOI":"10.1007\/978-3-030-78615-1_42"},{"key":"R8","doi-asserted-by":"crossref","unstructured":"Tang G Liu T Cai X Gao S Fu L . Standardization of clinical terminology based on hybrid recall and ERNIE. Presented at: ISAIMS 2022; Oct 13-15, 2022:19-23; Amsterdam, Netherlands. URL: https:\/\/dl.acm.org\/doi\/10.1145\/3570773.3570782 [Accessed 28-08-2026] [doi: 10.1145\/3570773.3570782]","DOI":"10.1145\/3570773.3570782"},{"issue":"2","key":"R9","doi-asserted-by":"publisher","first-page":"224","DOI":"10.4103\/2311-8571.378171","article-title":"Traditional Chinese medicine synonymous term conversion: a bidirectional encoder representations from transformers-based model for converting synonymous terms in traditional Chinese medicine","volume":"9","author":"Zhou","journal-title":"World J Tradit Chin Med"},{"issue":"1","key":"R10","doi-asserted-by":"publisher","first-page":"369","DOI":"10.3934\/mbe.2024017","article-title":"Enhancing traditional Chinese medicine diagnostics: integrating ontological knowledge for multi-label symptom entity classification","volume":"21","author":"Hu","journal-title":"Math Biosci Eng"},{"key":"R11","doi-asserted-by":"crossref","unstructured":"Crammer K Dredze M Ganchev K Talukdar PP Carroll S . Automatic code assignment to medical text. In: Cohen KB Demner-Fushman D Friedman C Hirschman L Pestian J , editors. Presented at: Workshop on BioNLP 2007: biological, translational, and clinical language processing; Jun 29, 2007:129-136; Prague, Czech Republic. URL: https:\/\/aclanthology.org\/W07-1017\/ [Accessed 28-08-2026] [doi: 10.3115\/1572392.1572416]","DOI":"10.3115\/1572392.1572416"},{"issue":"Suppl 3","key":"R12","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-9-S3-S10","article-title":"Automatic construction of rule-based ICD-9-CM coding systems","volume":"9","author":"Farkas","journal-title":"BMC Bioinformatics"},{"key":"R13","doi-asserted-by":"publisher","DOI":"10.1186\/s12911-015-0174-2","article-title":"Automatic classification of diseases from free-text death certificates for real-time surveillance","volume":"15","author":"Koopman","journal-title":"BMC Med Inform Decis Mak"},{"key":"R14","doi-asserted-by":"publisher","DOI":"10.1093\/database\/baw091","article-title":"AuDis: an automatic CRF-enhanced disease normalization in biomedical text","volume":"2016","author":"Lee","journal-title":"Database (Oxford)"},{"key":"R15","unstructured":"\u0160eva J Kittner M Roller R Leser U . Multi-lingual ICD-10 coding using a hybrid rule-based and supervised classification approach at CLEF eHealth 2017. In: Cappellato L Ferro N Goeuriot L Mandl T , editors. Presented at: Working Notes of CLEF 2017 - Conference and Labs of the Evaluation Forum; Sep 11-14, 2017; Dublin, Ireland. URL: https:\/\/ceur-ws.org\/Vol-1866\/paper_70.pdf [Accessed 28-08-2026]"},{"issue":"1","key":"R16","doi-asserted-by":"publisher","DOI":"10.1186\/s12911-020-1085-4","article-title":"Construction of a semi-automatic ICD-10 coding system","volume":"20","author":"Zhou","journal-title":"BMC Med Inform Decis Mak"},{"issue":"2","key":"R17","doi-asserted-by":"publisher","first-page":"231","DOI":"10.1136\/amiajnl-2013-002159","article-title":"Diagnosis code assignment: models and evaluation metrics","volume":"21","author":"Perotte","journal-title":"J Am Med Inform Assoc"},{"key":"R18","doi-asserted-by":"crossref","unstructured":"Ghiasvand O Kate RJ . UWM: a simple baseline method for identifying attributes of disease and disorder mentions in clinical text. In: Nakov P Zesch T Cer D Jurgens D , editors. Presented at: Proceedings of the 9th International Workshop on Semantic Evaluation (SemEval 2015); Jun 4-5, 2015:385-388; Denver, Colorado. URL: https:\/\/aclanthology.org\/S15-2066\/ [Accessed 20-05-2026] [doi: 10.18653\/v1\/S15-2066]","DOI":"10.18653\/v1\/S15-2066"},{"issue":"6","key":"R19","doi-asserted-by":"publisher","first-page":"1824","DOI":"10.1109\/JBHI.2018.2846626","article-title":"A clinical decision support framework for heterogeneous data sources","volume":"22","author":"Huang","journal-title":"IEEE J Biomed Health Inform"},{"key":"R20","unstructured":"Xu K Lam M Pang J Gao X Band C Mathur P et al. Multimodal machine learning for automated ICD coding. In: Doshi-Velez F Fackler J Jung K , editors. Presented at: Proceedings of the 4th Machine Learning for Healthcare Conference (MLHC 2019); Aug 9-10, 2019:197-215; Ann Arbor, Michigan. URL: https:\/\/proceedings.mlr.press\/v106\/xu19a.html [Accessed 20-05-2026]"},{"key":"R21","unstructured":"Boytcheva S . Automatic matching of ICD-10 codes to diagnoses in discharge letters. Presented at: Proceedings of the Second Workshop on Biomedical Natural Language Processing. Sep 15, 2011:Association for Computational Linguistics. 11-18; Hissar, Bulgaria. URL: https:\/\/aclanthology.org\/W11-4203\/ [Accessed 28-08-2026]"},{"issue":"22","key":"R22","doi-asserted-by":"publisher","first-page":"2909","DOI":"10.1093\/bioinformatics\/btt474","article-title":"DNorm: disease name normalization with pairwise learning to rank","volume":"29","author":"Leaman","journal-title":"Bioinformatics"},{"key":"R23","volume":"2020","author":"Ji","journal-title":"AMIA Jt Summits Transl Sci Proc"},{"key":"R24","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2020.103418","article-title":"A study of entity-linking methods for normalizing Chinese diagnosis and procedure terms to ICD codes","volume":"105","author":"Wang","journal-title":"J Biomed Inform"},{"key":"R25","doi-asserted-by":"crossref","unstructured":"Xu D Zhang Z Bethard S . A generate-and-rank framework with semantic type regularization for biomedical concept normalization. In: Jurafsky D Chai J Schluter N Tetreault J , editors. Presented at: Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics; Jul 5-10, 2020:8452-8464; Online. URL: https:\/\/aclanthology.org\/2020.acl-main.748\/ [Accessed 28-08-2026] [doi: 10.18653\/v1\/2020.acl-main.748]","DOI":"10.18653\/v1\/2020.acl-main.748"},{"key":"R26","doi-asserted-by":"crossref","unstructured":"Kalyan KS Sangeetha S . Target concept guided medical concept normalization in noisy user-generated texts. In: Agirre E Apidianaki M Vuli\u0107 I , editors. Presented at: Proceedings of Deep Learning Inside Out (DeeLIO); Nov 19, 2020:64-73; Online. URL: https:\/\/aclanthology.org\/2020.deelio-1.8\/ [Accessed 28-08-2026] [doi: 10.18653\/v1\/2020.deelio-1.8]","DOI":"10.18653\/v1\/2020.deelio-1.8"},{"issue":"14","key":"R27","doi-asserted-by":"publisher","first-page":"12657","DOI":"10.1609\/aaai.v35i14.17499","article-title":"A lightweight neural model for biomedical entity linking","volume":"35","author":"Chen","journal-title":"AAAI"},{"key":"R28","doi-asserted-by":"crossref","unstructured":"Lai T Ji H Zhai C . BERT might be overkill: a tiny but effective biomedical entity linker based on residual convolutional neural networks. In: Moens MF Huang X Specia L Yih SWT , editors. Presented at: Findings of the Association for Computational Linguistics; Nov 7-11, 2021:1631-1639; Punta Cana, Dominican Republic. URL: https:\/\/aclanthology.org\/2021.findings-emnlp.140\/ [Accessed 28-08-2026] [doi: 10.18653\/v1\/2021.findings-emnlp.140]","DOI":"10.18653\/v1\/2021.findings-emnlp.140"},{"issue":"1","key":"R29","doi-asserted-by":"publisher","first-page":"1018","DOI":"10.3934\/mbe.2023047","article-title":"Stacking-BERT model for Chinese medical procedure entity normalization","volume":"20","author":"Li","journal-title":"Math Biosci Eng"},{"key":"R30","doi-asserted-by":"crossref","unstructured":"Huang CW Tsai SC Chen YN . PLM-ICD: automatic ICD coding with pretrained language models. In: Naumann T Bethard S Roberts K Rumshisky A , editors. Presented at: Proceedings of the 4th Clinical Natural Language Processing Workshop; Jul 14, 2022:10-20; Seattle, WA. URL: https:\/\/aclanthology.org\/2022.clinicalnlp-1.2\/ [Accessed 28-08-2026] [doi: 10.18653\/v1\/2022.clinicalnlp-1.2]","DOI":"10.18653\/v1\/2022.clinicalnlp-1.2"},{"key":"R31","doi-asserted-by":"crossref","unstructured":"Yan J Wang Y Xiang L Zhou Y Zong C . A knowledge-driven generative model for multi-implication Chinese medical procedure entity normalization. In: Webber B Cohn T He Y Liu Y , editors. Presented at: Proceedings of the 2020 Conference on Empirical Methods in Natural Language Processing (EMNLP); Nov 16-20, 2020:1490-1499; Online. URL: https:\/\/aclanthology.org\/2020.emnlp-main.116\/ [Accessed 28-08-2026] [doi: 10.18653\/v1\/2020.emnlp-main.116]","DOI":"10.18653\/v1\/2020.emnlp-main.116"},{"issue":"20","key":"R32","doi-asserted-by":"publisher","first-page":"3610","DOI":"10.1093\/bioinformatics\/btab381","article-title":"A combined recall and rank framework with online negative sampling for Chinese procedure terminology normalization","volume":"37","author":"Liang","journal-title":"Bioinformatics"},{"key":"R33","doi-asserted-by":"publisher","DOI":"10.2196\/60334","article-title":"Chinese clinical named entity recognition with segmentation synonym sentence synthesis mechanism: algorithm development and validation","volume":"12","author":"Tang","journal-title":"JMIR Med Inform"},{"issue":"9","key":"R34","doi-asserted-by":"publisher","first-page":"1929","DOI":"10.1093\/jamia\/ocae095","article-title":"RT: a retrieving and chain-of-thought framework for few-shot medical named entity recognition","volume":"31","author":"Li","journal-title":"J Am Med Inform Assoc"},{"issue":"11","key":"R35","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btad698","article-title":"BELB: a biomedical entity linking benchmark","volume":"39","author":"Garda","journal-title":"Bioinformatics"},{"key":"R36","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2025.104806","article-title":"Contextual information contributes to biomedical named entity normalization","volume":"165","author":"Luo","journal-title":"J Biomed Inform"},{"issue":"4","key":"R37","doi-asserted-by":"publisher","DOI":"10.1001\/jamanetworkopen.2024.6474","article-title":"Evolution of the International Classification of Diseases\u2014from hierarchical classification to linguistic nuance","volume":"7","author":"Pine","journal-title":"JAMA Netw Open"},{"issue":"1","key":"R38","doi-asserted-by":"publisher","first-page":"3","DOI":"10.4258\/hir.2021.27.1.3","article-title":"Strategies for adopting and implementing SNOMED CT in Korea","volume":"27","author":"Park","journal-title":"Healthc Inform Res"},{"key":"R39","doi-asserted-by":"publisher","DOI":"10.1177\/20552076221089796","article-title":"Automated clinical pathway standardization using SNOMED CT-based semantic relatedness","volume":"8","author":"Alahmar","journal-title":"Digit Health"},{"key":"R40","doi-asserted-by":"publisher","DOI":"10.1016\/j.gerinurse.2024.07.010","article-title":"Pressure injury pain over time among nursing home residents","volume":"59","author":"Williams","journal-title":"Geriatr Nurs"},{"issue":"1","key":"R41","doi-asserted-by":"publisher","first-page":"107","DOI":"10.1007\/s11255-022-03317-y","article-title":"Nocturia: its characteristics, diagnostic algorithm and treatment","volume":"55","author":"Aucar","journal-title":"Int Urol Nephrol"},{"issue":"10","key":"R42","doi-asserted-by":"publisher","DOI":"10.1016\/j.xkme.2024.100882","article-title":"Early anuria in incident peritoneal dialysis patients: incidence, risk factors, and associated clinical outcomes","volume":"6","author":"Tu","journal-title":"Kidney Med"},{"issue":"1","key":"R43","doi-asserted-by":"publisher","DOI":"10.1186\/s12876-023-03104-8","article-title":"Comparative profiles of lubiprostone, linaclotide, and elobixibat for chronic constipation: a systematic literature review with meta-analysis and number needed to treat\/harm","volume":"24","author":"Rao","journal-title":"BMC Gastroenterol"},{"issue":"1","key":"R44","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-024-56627-9","article-title":"Promising clinical and immunological efficacy of Bacillus clausii spore probiotics for supportive treatment of persistent diarrhea in children","volume":"14","author":"Dang","journal-title":"Sci Rep"},{"key":"R45","doi-asserted-by":"publisher","DOI":"10.1016\/j.artmed.2024.102965","article-title":"CMCN: Chinese medical concept normalization using continual learning and knowledge-enhanced","volume":"157","author":"Han","journal-title":"Artif Intell Med"},{"issue":"9","key":"R46","doi-asserted-by":"publisher","first-page":"2076","DOI":"10.1093\/jamia\/ocae133","article-title":"Fine-tuning large language models for rare disease concept normalization","volume":"31","author":"Wang","journal-title":"J Am Med Inform Assoc"},{"issue":"1","key":"R47","doi-asserted-by":"publisher","DOI":"10.1093\/bioadv\/vbae116","article-title":"CoNECo: a corpus for named entity recognition and normalization of protein complexes","volume":"4","author":"Nastou","journal-title":"Bioinform Adv"},{"issue":"4","key":"R48","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btae163","article-title":"Advancing entity recognition in biomedicine via instruction tuning of large language models","volume":"40","author":"Keloth","journal-title":"Bioinformatics"},{"key":"R49","doi-asserted-by":"crossref","unstructured":"Xue M Yu B Liu T Zhang Y Meng E Wang B . Porous lattice transformer encoder for Chinese NER. In: Scott D Bel N Zong C , editors. Presented at: Proceedings of the 28th International Conference on Computational Linguistics; Dec 8-13, 2020:3831-3841; Barcelona, Spain (Online). URL: https:\/\/aclanthology.org\/2020.coling-main.340\/ [Accessed 28-08-2026] [doi: 10.18653\/v1\/2020.coling-main.340]","DOI":"10.18653\/v1\/2020.coling-main.340"},{"key":"R50","doi-asserted-by":"crossref","unstructured":"Li X Yan H Qiu X Huang X . FLAT: Chinese NER using flat-lattice transformer. In: Jurafsky D Chai J Schluter N Tetreault J , editors. Presented at: Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics; Jul 5-10, 2020:6836-6842; Online. URL: https:\/\/aclanthology.org\/2020.acl-main.611\/ [Accessed 28-08-2026] [doi: 10.18653\/v1\/2020.acl-main.611]","DOI":"10.18653\/v1\/2020.acl-main.611"},{"issue":"1","key":"R51","doi-asserted-by":"publisher","DOI":"10.2196\/23104","article-title":"Clinical term normalization using learned edit patterns and subconcept matching: system development and evaluation","volume":"9","author":"Kate","journal-title":"JMIR Med Inform"},{"issue":"20","key":"R52","doi-asserted-by":"publisher","first-page":"4837","DOI":"10.1093\/bioinformatics\/btac598","article-title":"BERN2: an advanced neural biomedical named entity recognition and normalization tool","volume":"38","author":"Sung","journal-title":"Bioinformatics"},{"key":"R53","doi-asserted-by":"publisher","DOI":"10.2196\/59782","article-title":"Evaluating medical entity recognition in health care: entity model quantitative study","volume":"12","author":"Liu","journal-title":"JMIR Med Inform"},{"key":"R54","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2025.104783","article-title":"Discontinuous named entities in clinical text: a systematic literature review","volume":"162","author":"Alhassan","journal-title":"J Biomed Inform"},{"key":"R55","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2021.103849","article-title":"A two-stage workflow to extract and harmonize drug mentions from clinical notes into observational databases","volume":"120","author":"Almeida","journal-title":"J Biomed Inform"},{"issue":"3","key":"R56","doi-asserted-by":"publisher","first-page":"749","DOI":"10.1007\/s11517-024-03227-4","article-title":"NSSC: a neuro-symbolic AI system for enhancing accuracy of named entity recognition and linking from oncologic clinical notes","volume":"63","author":"Garc\u00eda-Barrag\u00e1n","journal-title":"Med Biol Eng Comput"},{"issue":"1","key":"R57","doi-asserted-by":"publisher","DOI":"10.1186\/s12911-025-03257-4","article-title":"A framework for normalized extraction of fine-grained traditional Chinese medicine symptom entities and relations","volume":"25","author":"Gou","journal-title":"BMC Med Inform Decis Mak"},{"issue":"9","key":"R58","doi-asserted-by":"publisher","first-page":"1880","DOI":"10.1080\/01605682.2024.2446683","article-title":"A decision support system for comments-adjusted ranking of hotels","volume":"76","author":"Wang","journal-title":"J Oper Res Soc"},{"issue":"8","key":"R59","doi-asserted-by":"publisher","first-page":"7359","DOI":"10.1109\/JBHI.2025.3595140","article-title":"Improving clinical foundation models with multi-modal learning and domain adaptation for chronic disease prediction","volume":"30","author":"Hou","journal-title":"IEEE J Biomed Health Inform"},{"key":"R60","doi-asserted-by":"publisher","DOI":"10.1177\/20552076241288681","article-title":"Unsupervised SapBERT-based bi-encoders for medical concept annotation of clinical narratives with SNOMED CT","volume":"10","author":"Abdulnazar","journal-title":"Digit Health"},{"issue":"2","key":"R61","doi-asserted-by":"publisher","first-page":"484","DOI":"10.1093\/jamia\/ocaf176","article-title":"Using natural language processing to extract information from clinical text in electronic medical records for populating clinical registries: a systematic review","volume":"33","author":"Liu","journal-title":"J Am Med Inform Assoc"}],"container-title":["JMIR Medical Informatics"],"original-title":[],"language":"en","deposited":{"date-parts":[[2026,9,25]],"date-time":"2026-09-25T18:24:32Z","timestamp":1790360672000},"score":1,"resource":{"primary":{"URL":"https:\/\/medinform.jmir.org\/2026\/1\/e85825"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9,25]]},"references-count":61,"URL":"https:\/\/doi.org\/10.2196\/85825","relation":{},"ISSN":["2291-9694"],"issn-type":[{"value":"2291-9694","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,9,25]]},"article-number":"v14i3e85825"}}