{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,13]],"date-time":"2026-10-13T05:22:46Z","timestamp":1791868966626,"version":"4.3.4"},"reference-count":30,"publisher":"Ovid Technologies (Wolters Kluwer Health)","issue":"2","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["CJASN"],"published-print":{"date-parts":[[2019,2]]},"abstract":"<jats:sec>\n                    <jats:title>Background and objectives<\/jats:title>\n                    <jats:p>FSGS and nephrotic syndrome studies have shown that single gene causes are more likely to be found in pediatric cases than adults. Consequently, many studies have examined limited gene panels in largely pediatric cohorts.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Design, setting, participants, &amp; measurements<\/jats:title>\n                    <jats:p>Whole-exome sequencing was performed in adults with FSGS diagnosed between 1976 and 2017 in the Toronto GN Registry. An expanded panel of 109 genes linked to FSGS, glomerular basement membrane abnormalities, as well as causes of pediatric ESKD including congenital abnormalities of the kidney and urinary tract (CAKUT) and nephronophthisis, were examined.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Results<\/jats:title>\n                    <jats:p>\n                      The cohort was composed of 193 individuals from 179 families. Nearly half (49%) developed ESKD at a mean age of 47\u00b117 years. The genetic diagnostic rate was 11%. Of definitely pathogenic variants, 55% were in\n                      <jats:italic toggle=\"yes\">COL4A<\/jats:italic>\n                      (\n                      <jats:italic toggle=\"yes\">A3\/A4\/A5<\/jats:italic>\n                      ), 40% were in podocyte genes, and 5% were in CAKUT genes. Many, but not all individuals with\n                      <jats:italic toggle=\"yes\">COL4A<\/jats:italic>\n                      definitely pathogenic variants had some evidence of glomerular basement membrane abnormalities. The estimated mean survival\/age of kidney failure for individuals with\n                      <jats:italic toggle=\"yes\">COL4A<\/jats:italic>\n                      definitely pathogenic variants was 58 years (95% confidence interval, 49 to 69), far later than what has been reported in the literature. Likely pathogenic variants were identified in an additional 9% of the cohort, with most in\n                      <jats:italic toggle=\"yes\">COL4A<\/jats:italic>\n                      . Correlation with glomerular basement membrane morphology suggested a causal role for at least some of these likely pathogenic variants.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Conclusions<\/jats:title>\n                    <jats:p>\n                      Even with an expanded gene panel, we find that\n                      <jats:italic toggle=\"yes\">COL4A<\/jats:italic>\n                      disorders are the leading monogenic cause in adults diagnosed with FSGS.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Podcast<\/jats:title>\n                    <jats:p>This article contains a podcast at https:\/\/www.asn-online.org\/media\/podcast\/CJASN\/2019_01_15_CJASNPodcast_19_02_.mp3<\/jats:p>\n                  <\/jats:sec>","DOI":"10.2215\/cjn.08750718","type":"journal-article","created":{"date-parts":[[2019,1,15]],"date-time":"2019-01-15T13:56:31Z","timestamp":1547560591000},"page":"213-223","source":"Crossref","is-referenced-by-count":131,"title":["Integration of Genetic Testing and Pathology for the Diagnosis of Adults with FSGS"],"prefix":"10.2215","volume":"14","author":[{"given":"Tony","family":"Yao","sequence":"first","affiliation":[{"name":"Division of Nephrology and"},{"name":"Toronto General Hospital Research Institute, Toronto General Hospital, Toronto, Canada;"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Khalil","family":"Udwan","sequence":"additional","affiliation":[{"name":"Division of Nephrology and"},{"name":"Toronto General Hospital Research Institute, Toronto General Hospital, Toronto, Canada;"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rohan","family":"John","sequence":"additional","affiliation":[{"name":"Department of Pathology, University Health Network, Toronto, Canada;"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Akanchaya","family":"Rana","sequence":"additional","affiliation":[{"name":"Division of Nephrology and"},{"name":"Toronto General Hospital Research Institute, Toronto General Hospital, Toronto, Canada;"},{"name":"Institute of Medical Sciences,"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Amirreza","family":"Haghighi","sequence":"additional","affiliation":[{"name":"Division of Nephrology and"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lizhen","family":"Xu","sequence":"additional","affiliation":[{"name":"The Centre for Applied Genomics and"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Saidah","family":"Hack","sequence":"additional","affiliation":[{"name":"Division of Nephrology and"},{"name":"Toronto General Hospital Research Institute, Toronto General Hospital, Toronto, Canada;"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Heather N.","family":"Reich","sequence":"additional","affiliation":[{"name":"Division of Nephrology and"},{"name":"Toronto General Hospital Research Institute, Toronto General Hospital, Toronto, Canada;"},{"name":"Institute of Medical Sciences,"},{"name":"Department of Medicine, and"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Michelle Adrienne","family":"Hladunewich","sequence":"additional","affiliation":[{"name":"Division of Nephrology, Sunnybrook Health Sciences Center, Toronto, Canada"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Daniel C.","family":"Cattran","sequence":"additional","affiliation":[{"name":"Division of Nephrology and"},{"name":"Toronto General Hospital Research Institute, Toronto General Hospital, Toronto, Canada;"},{"name":"Institute of Medical Sciences,"},{"name":"Department of Medicine, and"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Andrew D.","family":"Paterson","sequence":"additional","affiliation":[{"name":"Institute of Medical Sciences,"},{"name":"Department of Medicine, and"},{"name":"Division of Epidemiology and Biostatistics, Dalla Lana School of Public Health, Toronto, Ontario, Canada;"},{"name":"Genetics and Genome Biology, Research Institute at Hospital for Sick Children, Toronto, Canada; and"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"York","family":"Pei","sequence":"additional","affiliation":[{"name":"Division of Nephrology and"},{"name":"Toronto General Hospital Research Institute, Toronto General Hospital, Toronto, Canada;"},{"name":"Institute of Medical Sciences,"},{"name":"Department of Medicine, and"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Moumita","family":"Barua","sequence":"additional","affiliation":[{"name":"Division of Nephrology and"},{"name":"Toronto General Hospital Research Institute, Toronto General Hospital, Toronto, Canada;"},{"name":"Institute of Medical Sciences,"},{"name":"Department of Medicine, and"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"276","published-online":{"date-parts":[[2019,1,15]]},"reference":[{"key":"B2-20230813","doi-asserted-by":"crossref","first-page":"251","DOI":"10.1038\/73456","article-title":"Mutations in ACTN4, encoding alpha-actinin-4, cause familial focal segmental glomerulosclerosis.","volume":"24","author":"Kaplan","year":"2000","journal-title":"Nat Genet"},{"key":"B3-20230813","doi-asserted-by":"crossref","first-page":"739","DOI":"10.1038\/ng1592","article-title":"TRPC6 is a glomerular slit diaphragm-associated channel required for normal renal function.","volume":"37","author":"Reiser","year":"2005","journal-title":"Nat Genet"},{"key":"B4-20230813","doi-asserted-by":"crossref","first-page":"72","DOI":"10.1038\/ng.505","article-title":"Mutations in the formin gene INF2 cause focal segmental glomerulosclerosis.","volume":"42","author":"Brown","year":"2010","journal-title":"Nat Genet"},{"key":"B5-20230813","doi-asserted-by":"crossref","first-page":"1801","DOI":"10.1126\/science.1106215","article-title":"A mutation in the TRPC6 cation channel causes familial focal segmental glomerulosclerosis.","volume":"308","author":"Winn","year":"2005","journal-title":"Science"},{"key":"B6-20230813","doi-asserted-by":"crossref","first-page":"575","DOI":"10.1016\/S1097-2765(00)80057-X","article-title":"Positionally cloned gene for a novel glomerular protein\u2013nephrin\u2013is mutated in congenital nephrotic syndrome.","volume":"4","author":"Kestil\u00e4","year":"1998","journal-title":"Mol Cell"},{"key":"B7-20230813","doi-asserted-by":"crossref","first-page":"2328","DOI":"10.1111\/jcmm.12924","article-title":"A novel heterozygous COL4A4 missense mutation in a Chinese family with focal segmental glomerulosclerosis.","volume":"20","author":"Wu","year":"2016","journal-title":"J Cell Mol Med"},{"key":"B8-20230813","doi-asserted-by":"crossref","first-page":"1253","DOI":"10.1038\/ki.2014.305","article-title":"Rare hereditary COL4A3\/COL4A4 variants may be mistaken for familial focal segmental glomerulosclerosis.","volume":"86","author":"Malone","year":"2014","journal-title":"Kidney Int"},{"key":"B9-20230813","doi-asserted-by":"crossref","first-page":"171","DOI":"10.3389\/fped.2018.00171","article-title":"Heterozygous COL4A3 variants in histologically diagnosed focal segmental glomerulosclerosis.","volume":"6","author":"Braunisch","year":"2018","journal-title":"Front Pediatr"},{"key":"B10-20230813","doi-asserted-by":"crossref","first-page":"961","DOI":"10.1093\/ndt\/gfv325","article-title":"Collagen (COL4A) mutations are the most frequent mutations underlying adult focal segmental glomerulosclerosis.","volume":"31","author":"Gast","year":"2016","journal-title":"Nephrol Dial Transplant"},{"key":"B11-20230813","doi-asserted-by":"crossref","first-page":"184","DOI":"10.1093\/jmcb\/mjv023","article-title":"COL4A3 mutations cause focal segmental glomerulosclerosis.","volume":"7","author":"Xie","year":"2015","journal-title":"J Mol Cell Biol"},{"key":"B12-20230813","doi-asserted-by":"crossref","first-page":"2721","DOI":"10.1093\/ndt\/gfp158","article-title":"Clinico-pathological correlations in 127 patients in 11 large pedigrees, segregating one of three heterozygous mutations in the COL4A3\/COL4A4 genes associated with familial haematuria and significant late progression to proteinuria and chronic kidney disease from focal segmental glomerulosclerosis.","volume":"24","author":"Pierides","year":"2009","journal-title":"Nephrol Dial Transplant"},{"key":"B13-20230813","doi-asserted-by":"crossref","first-page":"3004","DOI":"10.1681\/ASN.2007040444","article-title":"COL4A3\/COL4A4 mutations producing focal segmental glomerulosclerosis and renal failure in thin basement membrane nephropathy.","volume":"18","author":"Voskarides","year":"2007","journal-title":"J Am Soc Nephrol"},{"key":"B14-20230813","doi-asserted-by":"crossref","first-page":"1942","DOI":"10.1681\/ASN.2013070686","article-title":"Mutations in PAX2 associate with adult-onset FSGS.","volume":"25","author":"Barua","year":"2014","journal-title":"J Am Soc Nephrol"},{"key":"B15-20230813","doi-asserted-by":"crossref","first-page":"1815","DOI":"10.1681\/ASN.2011040337","article-title":"Exome sequencing reveals cubilin mutation as a single-gene cause of proteinuria.","volume":"22","author":"Ovunc","year":"2011","journal-title":"J Am Soc Nephrol"},{"key":"B16-20230813","doi-asserted-by":"crossref","first-page":"1754","DOI":"10.1093\/bioinformatics\/btp324","article-title":"Fast and accurate short read alignment with Burrows-Wheeler transform.","volume":"25","author":"Li","year":"2009","journal-title":"Bioinformatics"},{"key":"B17-20230813","doi-asserted-by":"crossref","first-page":"1297","DOI":"10.1101\/gr.107524.110","article-title":"The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data.","volume":"20","author":"McKenna","year":"2010","journal-title":"Genome Res"},{"key":"B18-20230813","doi-asserted-by":"crossref","first-page":"491","DOI":"10.1038\/ng.806","article-title":"A framework for variation discovery and genotyping using next-generation DNA sequencing data.","volume":"43","author":"DePristo","year":"2011","journal-title":"Nat Genet"},{"key":"B19-20230813","doi-asserted-by":"crossref","first-page":"597","DOI":"10.1016\/j.ajhg.2012.08.005","article-title":"Discovery and statistical genotyping of copy-number variation from whole-exome sequencing depth.","volume":"91","author":"Fromer","year":"2012","journal-title":"Am J Hum Genet"},{"key":"B21-20230813","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1186\/s12859-014-0418-7","article-title":"Fast individual ancestry inference from DNA sequence data leveraging allele frequencies for multiple populations.","volume":"16","author":"Bansal","year":"2015","journal-title":"BMC Bioinformatics"},{"key":"B22-20230813","doi-asserted-by":"crossref","first-page":"52","DOI":"10.1038\/nature09298","article-title":"Integrating common and rare genetic variation in diverse human populations.","volume":"467","author":"Altshuler","year":"2010","journal-title":"Nature"},{"key":"B23-20230813","doi-asserted-by":"crossref","first-page":"285","DOI":"10.1038\/nature19057","article-title":"Analysis of protein-coding genetic variation in 60,706 humans.","volume":"536","author":"Lek","year":"2016","journal-title":"Nature"},{"key":"B24-20230813","doi-asserted-by":"crossref","first-page":"D986","DOI":"10.1093\/nar\/gkt958","article-title":"The Database of Genomic Variants: A curated collection of structural variation in the human genome.","volume":"42","author":"MacDonald","year":"2014","journal-title":"Nucleic Acids Res"},{"key":"B26-20230813","doi-asserted-by":"crossref","first-page":"894","DOI":"10.1002\/humu.21517","article-title":"dbNSFP: A lightweight database of human nonsynonymous SNPs and their functional predictions.","volume":"32","author":"Liu","year":"2011","journal-title":"Hum Mutat"},{"key":"B27-20230813","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1002\/humu.22932","article-title":"dbNSFP v3.0: A one-stop database of functional predictions and annotations for human nonsynonymous and splice-site SNVs.","volume":"37","author":"Liu","year":"2016","journal-title":"Hum Mutat"},{"key":"B28-20230813","doi-asserted-by":"crossref","first-page":"e67","DOI":"10.1093\/nar\/gkp215","article-title":"Human splicing finder: An online bioinformatics tool to predict splicing signals.","volume":"37","author":"Desmet","year":"2009","journal-title":"Nucleic Acids Res"},{"key":"B29-20230813","doi-asserted-by":"crossref","first-page":"2603","DOI":"10.1097\/01.ASN.0000090034.71205.74","article-title":"X-linked Alport syndrome: Natural history and genotype-phenotype correlations in girls and women belonging to 195 families: A \u201cEuropean Community Alport Syndrome Concerted Action\u201d study.","volume":"14","author":"Jais","year":"2003","journal-title":"J Am Soc Nephrol"},{"key":"B30-20230813","doi-asserted-by":"crossref","first-page":"1713","DOI":"10.2215\/CJN.00580116","article-title":"Alport syndrome in women and girls.","volume":"11","author":"Savige","year":"2016","journal-title":"Clin J Am Soc Nephrol"},{"key":"B31-20230813","doi-asserted-by":"crossref","first-page":"e0161802","DOI":"10.1371\/journal.pone.0161802","article-title":"X-linked and autosomal recessive alport syndrome: Pathogenic variant features and further genotype-phenotype correlations.","volume":"11","author":"Savige","year":"2016","journal-title":"PLoS One"},{"key":"B32-20230813","doi-asserted-by":"crossref","first-page":"142","DOI":"10.1159\/000014971","article-title":"Non-random X chromosome inactivation in mammalian cells.","volume":"80","author":"Migeon","year":"1998","journal-title":"Cytogenet Cell Genet"},{"key":"B33-20230813","doi-asserted-by":"crossref","first-page":"244","DOI":"10.1038\/nature24265","article-title":"Landscape of X chromosome inactivation across human tissues.","volume":"550","author":"Tukiainen","year":"2017","journal-title":"Nature"}],"container-title":["Clinical Journal of the American Society of Nephrology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.ovid.com\/01277230-201902000-00010","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,8,10]],"date-time":"2026-08-10T13:38:14Z","timestamp":1786369094000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.ovid.com\/01277230-201902000-00010"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,1,15]]},"references-count":30,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2019]]}},"URL":"https:\/\/doi.org\/10.2215\/cjn.08750718","relation":{"has-review":[{"id-type":"doi","id":"10.3410\/f.734867411.793560751","asserted-by":"object"},{"id-type":"doi","id":"10.3410\/f.734867411.793555116","asserted-by":"object"}]},"ISSN":["1555-9041","1555-905X"],"issn-type":[{"value":"1555-9041","type":"print"},{"value":"1555-905X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2019,1,15]]}}}