{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"institution":[{"name":"Authorea, Inc."}],"indexed":{"date-parts":[[2025,6,3]],"date-time":"2025-06-03T16:42:12Z","timestamp":1748968932894,"version":"3.41.0"},"posted":{"date-parts":[[2024,1,31]]},"group-title":"Preprints","reference-count":0,"publisher":"Wiley","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"accepted":{"date-parts":[[2024,1,31]]},"abstract":"<jats:p id=\"p1\">Largemouth bass (Micropterus salmoides) has become a cosmopolitan\nspecies due to its widespread introduction as game and domesticated\nfish. Here a high-quality chromosome-level reference genome of a female\nM. salmoides was produced by combining Illumina, PacBio and Hi-C\nsequencing, aiming to better understand the evolution of traits such as\npathogen resistance and environmental adaptations. The genome size was\n844.88 Mb with a contig N50 of 15.68 Mb, and 23 chromosomes anchoring\n99.9% of the genome sequences. A total of 26,370 protein-coding genes\nfrom 3415 gene families, of which 127 unique to M. salmoides. Mining of\npublicly available RNA-Seq sequences from healthy M salmoides identified\nsequences of known fish viral pathogens whose apparent tolerance could\nbe linked to the expansion of 91 immune-related gene families providing\nhigh resistance to disease. The prevalence of such expressed viral\nelements captured in the M. salmoides transcriptome suggests an history\nof interaction between the fish and the viral environment. The\nhigh-quality genome will be a fundamental resource to understand M.\nsalmoides traits that enable the successful colonization of novel and\nchanging environments across the world.<\/jats:p>","DOI":"10.22541\/au.170669194.42821308\/v1","type":"posted-content","created":{"date-parts":[[2024,1,31]],"date-time":"2024-01-31T09:06:19Z","timestamp":1706691979000},"source":"Crossref","is-referenced-by-count":0,"title":["Immune-related gene expansions underlie an evolutionary history of viral interactions in the largemouth bass (Micropterus salmoides) genome"],"prefix":"10.22541","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4211-4968","authenticated-orcid":true,"given":"Kuo","family":"He","sequence":"first","affiliation":[{"name":"Sichuan Agricultural University"}]},{"given":"LiuLan","family":"Zhao","sequence":"additional","affiliation":[{"name":"Sichuan Agricultural University - Chengdu Campus"}]},{"given":"Zihao","family":"Yuan","sequence":"additional","affiliation":[{"name":"Institute of Oceanology Chinese Academy of Sciences"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6244-6468","authenticated-orcid":true,"given":"Adelino","family":"Can\u00e1rio","sequence":"additional","affiliation":[{"name":"Universidade do Algarve"}]},{"given":"Qiao","family":"Liu","sequence":"additional","affiliation":[{"name":"Sichuan Agricultural University - Chengdu Campus"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3955-0101","authenticated-orcid":true,"given":"Shi-Yi","family":"Chen","sequence":"additional","affiliation":[{"name":"Sichuan Agricultural University"}]},{"given":"Jiazhong","family":"Guo","sequence":"additional","affiliation":[{"name":"Sichuan Agricultural University - Chengdu Campus"}]},{"given":"Wei","family":"Luo","sequence":"additional","affiliation":[{"name":"Sichuan Agricultural University - Chengdu Campus"}]},{"given":"Haoxiao","family":"Yan","sequence":"additional","affiliation":[{"name":"Sichuan Agricultural University - Chengdu Campus"}]},{"given":"Dongmei","family":"Zhang","sequence":"additional","affiliation":[{"name":"Sichuan Agricultural University - Chengdu Campus"}]},{"given":"Lisen","family":"Li","sequence":"additional","affiliation":[{"name":"Universidade do Algarve - Campus de Gambelas"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3209-5641","authenticated-orcid":true,"given":"Song","family":"Yang","sequence":"additional","affiliation":[{"name":"Sichuan Agricultural University - Chengdu Campus"}]}],"member":"311","container-title":[],"original-title":[],"deposited":{"date-parts":[[2024,1,31]],"date-time":"2024-01-31T09:06:19Z","timestamp":1706691979000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.authorea.com\/users\/737664\/articles\/712471-immune-related-gene-expansions-underlie-an-evolutionary-history-of-viral-interactions-in-the-largemouth-bass-micropterus-salmoides-genome?commit=7c706c2341ac5fa336bd27a096fc0ab2af0416de"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,1,31]]},"references-count":0,"URL":"https:\/\/doi.org\/10.22541\/au.170669194.42821308\/v1","relation":{},"subject":[],"published":{"date-parts":[[2024,1,31]]},"subtype":"preprint"}}