{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,22]],"date-time":"2026-08-22T05:28:52Z","timestamp":1787376532430,"version":"build-2736575974"},"reference-count":29,"publisher":"Microbiology Research Foundation","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J. Gen. Appl. Microbiol."],"published-print":{"date-parts":[[2026]]},"DOI":"10.2323\/jgam.2026.07.001","type":"journal-article","created":{"date-parts":[[2026,8,20]],"date-time":"2026-08-20T22:11:24Z","timestamp":1787263884000},"source":"Crossref","is-referenced-by-count":0,"title":["Bioinformatics analysis of extracellular glycosyl hydrolases mined from the genome of Halophilic &lt;i&gt;Meridianimaribacter&lt;\/i&gt; sp. CL38"],"prefix":"10.2323","author":[{"given":"Zhen","family":"Wei Tan","sequence":"first","affiliation":[{"name":"Department of Biological Science, Faculty of Science, Universiti Tunku Abdul Rahman, Jalan Universiti"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Muhamad","family":"Naim Abd Malek","sequence":"additional","affiliation":[{"name":"Department of Biological Science, Faculty of Science, Universiti Tunku Abdul Rahman, Jalan Universiti"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kah","family":"Yaw Ee","sequence":"additional","affiliation":[{"name":"Department of Agricultural and Food Science, Faculty of Science, Universiti Tunku Abdul Rahman, Jalan Universiti"},{"name":"Centre for Agriculture and Food Research, Universiti Tunku Abdul Rahman, Jalan Universiti"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wei","family":"Lun Lim","sequence":"additional","affiliation":[{"name":"Faculty of Chemical Engineering Technology, Universiti Malaysia Perlis"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chun","family":"Shiong Chong","sequence":"additional","affiliation":[{"name":"Department of Biosciences, Faculty of Science, Universiti Teknologi Malaysia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ming","family":"Quan Lam","sequence":"additional","affiliation":[{"name":"Department of Biological Science, Faculty of Science, Universiti Tunku Abdul Rahman, Jalan Universiti"},{"name":"Centre for Agriculture and Food Research, Universiti Tunku Abdul Rahman, Jalan Universiti"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1159","reference":[{"key":"1","doi-asserted-by":"crossref","unstructured":"Abe, K., Nakajima, M., Yamashita, T., Matsunaga, H., Kamisuki, S. et al. (2017) Biochemical and structural analyses of a bacterial endo-\u03b2-1, 2-glucanase reveal a new glycoside hydrolase family. <i>J. Biol. Chem.<\/i>, <b>292<\/b>, 7487-7506.","DOI":"10.1074\/jbc.M116.762724"},{"key":"2","doi-asserted-by":"crossref","unstructured":"Baksi, S., Saha, D., Saha, S., Sarkar, U., Basu, D. et al. (2023) Pre-treatment of lignocellulosic biomass: review of various physico-chemical and biological methods influencing the extent of biomass depolymerization. <i>Int. J. Environ. Sci. Technol.<\/i>, <b>20<\/b>, 13895-13922.","DOI":"10.1007\/s13762-023-04838-4"},{"key":"3","doi-asserted-by":"crossref","unstructured":"Carlo, A-S., Nykjaer, A., and Willnow, T.E. (2014) Sorting receptor sortilin\u2014a culprit in cardiovascular and neurological diseases. <i>J. Mol. Med.<\/i>, <b>92<\/b>, 905-911.","DOI":"10.1007\/s00109-014-1152-3"},{"key":"4","doi-asserted-by":"crossref","unstructured":"DasSarma, S. and DasSarma, P. (2015) Halophiles and their enzymes: negativity put to good use. <i>Curr. Opin. Microbiol.<\/i>, <b>25<\/b>, 120-126.","DOI":"10.1016\/j.mib.2015.05.009"},{"key":"5","doi-asserted-by":"crossref","unstructured":"Gasteiger, E., Hoogland, C., Gattiker, A., Duvaud, Se., Wilkins, M.R. et al. (2003) ExPASy: the proteomics server for in-depth protein knowledge and analysis. <i>Nucleic Acids Res.<\/i>, <b>31<\/b>, 3784-3788.","DOI":"10.1093\/nar\/gkg563"},{"key":"6","doi-asserted-by":"crossref","unstructured":"Gavriilidou, A., Gutleben, J., Versluis, D., Forgiarini, F., van Passel, M.W. et al. (2020) Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis. <i>BMC Genomics<\/i>, <b>21<\/b>, 1-21.","DOI":"10.1186\/s12864-020-06971-7"},{"key":"7","doi-asserted-by":"crossref","unstructured":"Jatoi, A.S., Abbasi, S.A., Hashmi, Z., Shah, A.K., Alam, M.S. et al. (2023) Recent trends and future perspectives of lignocellulose biomass for biofuel production: A comprehensive review. <i>Biomass Convers. Biorefin.<\/i>, <b>12<\/b>, 6457-6469.","DOI":"10.1007\/s13399-021-01853-8"},{"key":"8","doi-asserted-by":"crossref","unstructured":"Kumar, S., Paul, D., Bhushan, B., Wakchaure, G., Meena, K.K. et al. (2020) Traversing the \u201cOmic\u201d landscape of microbial halotolerance for key molecular processes and new insights. <i>Crit. Rev. Microbiol.<\/i>, <b>46<\/b>, 631-653.","DOI":"10.1080\/1040841X.2020.1819770"},{"key":"9","doi-asserted-by":"crossref","unstructured":"Lam, M.Q., Nik Mut, N.N., Thevarajoo, S., Chen, S.J., Selvaratnam, C. et al. (2018) Characterization of detergent compatible protease from halophilic <i>Virgibacillus<\/i> sp. CD6. <i>3 Biotech<\/i>, <b>8<\/b>, 104.","DOI":"10.1007\/s13205-018-1133-2"},{"key":"10","doi-asserted-by":"crossref","unstructured":"Lam, M.Q., Oates, N.C., Thevarajoo, S., Tokiman, L., Goh, K.M. et al. (2020) Genomic analysis of a lignocellulose degrading strain from the underexplored genus <i>Meridianimaribacter<\/i>. <i>Genomics<\/i>, <b>112<\/b>, 952-960.","DOI":"10.1016\/j.ygeno.2019.06.011"},{"key":"11","doi-asserted-by":"crossref","unstructured":"Lam, M.Q., Chen, S.J., Goh, K.M., Abd Manan, F., Yahya, A. et al. (2021) Genome sequence of an uncharted halophilic <i>bacterium Robertkochia marina<\/i> with deciphering its phosphate-solubilizing ability. <i>Braz. J. Microbiol<\/i>., <b>52<\/b>, 251-256.","DOI":"10.1007\/s42770-020-00401-2"},{"key":"12","doi-asserted-by":"crossref","unstructured":"McBride, M. J. and Zhu, Y. (2013) Gliding motility and Por secretion system genes are widespread among members of the phylum bacteroidetes. <i>J. Bacteriol.<\/i>, <b>195<\/b>, 270\u2013278.","DOI":"10.1128\/JB.01962-12"},{"key":"13","unstructured":"McBride, M.J. (2014) The Family Flavobacteriaceae . <i>In<\/i>: Rosenberg, E., DeLong, E.F., Lory, S., Stackebrandt, E., Thompson, F. (eds.), The Prokaryotes. Springer, Berlin, Heidelberg."},{"key":"14","doi-asserted-by":"crossref","unstructured":"Moran, M.A., Kujawinski, E.B., Schroer, W.F., Amin, S.A., Bates, N.R. et al. (2022) Microbial metabolites in the marine carbon cycle. <i>Nat. Microbiol<\/i>., <b>7,<\/b> 508\u2013523.","DOI":"10.1038\/s41564-022-01090-3"},{"key":"15","doi-asserted-by":"crossref","unstructured":"Panda, S. and Chandra, G. (2012) Physicochemical characterization and functional analysis of some snake venom toxin proteins and related non-toxin proteins of other chordates. <i>Bioinformatics<\/i>, <b>8<\/b>, 891.","DOI":"10.6026\/97320630008891"},{"key":"16","doi-asserted-by":"crossref","unstructured":"Paul, S., Bag, S.K., Das, S., Harvill, E.T., and Dutta, C. (2008) Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes. <i>Genome Biol.<\/i>, <b>9<\/b>, 1-19.","DOI":"10.1186\/gb-2008-9-4-r70"},{"key":"17","doi-asserted-by":"crossref","unstructured":"Prasad, B., Padhi, R., and Ghosh, G. (2023) A review on key pretreatment approaches for lignocellulosic biomass to produce biofuel and value-added products, <i>International J. Environ. Sci. Tech.<\/i>, <b>20<\/b>, 6929-6944.","DOI":"10.1007\/s13762-022-04252-2"},{"key":"18","doi-asserted-by":"crossref","unstructured":"Rinaldi, R., Jastrzebski, R., Clough, M.T., Ralph, J., Kennema, M. et al. (2016) Paving the way for lignin valorisation: recent advances in bioengineering, biorefining and catalysis. <i>Angew. Chem. Int. Ed.<\/i>, <b>55<\/b>, 8164-8215.","DOI":"10.1002\/anie.201510351"},{"key":"19","doi-asserted-by":"crossref","unstructured":"Sanjaya, R.E., Putri, K.D.A., Kurniati, A., Rohman, A., and Puspaningsih, N.N.T. (2021) In silico characterization of the GH5-cellulase family from uncultured microorganisms: physicochemical and structural studies. <i>J. Genet. Eng. Biotechnol.<\/i>, <b>19<\/b>, 143.","DOI":"10.1186\/s43141-021-00236-w"},{"key":"20","doi-asserted-by":"crossref","unstructured":"Seo, H., Kim, J.H., Lee, S.M., and Lee, S.W. (2024) The plant-associated <i>Flavobacterium<\/i>: a hidden helper for improving plant health. <i>Plant Pathol. J<\/i>., <b>40<\/b>, 251\u2013260.","DOI":"10.5423\/PPJ.RW.01.2024.0019"},{"key":"21","doi-asserted-by":"crossref","unstructured":"Sharma, H.K., Xu, C., and Qin, W. (2019) Biological pretreatment of lignocellulosic biomass for biofuels and bioproducts: an overview. <i>Waste Biomass Valori.<\/i>, <b>10<\/b>, 235-251.","DOI":"10.1007\/s12649-017-0059-y"},{"key":"22","doi-asserted-by":"crossref","unstructured":"Shimizu, H., Nakajima, M., Miyanaga, A., Takahashi, Y., Tanaka, N. et al. (2018) Characterization and structural analysis of a novel exo-type enzyme acting on \u03b2-1, 2-glucooligosaccharides from <i>Parabacteroides distasonis<\/i>. <i>Biochemistry<\/i>, <b>57<\/b>, 3849-3860.","DOI":"10.1021\/acs.biochem.8b00385"},{"key":"23","doi-asserted-by":"crossref","unstructured":"Siglioccolo, A., Paiardini, A., Piscitelli, M., and Pascarella, S. (2011) Structural adaptation of extreme halophilic proteins through decrease of conserved hydrophobic contact surface. <i>BMC Struct. Biol.<\/i>, <b>11<\/b>, 1-12.","DOI":"10.1186\/1472-6807-11-50"},{"key":"24","doi-asserted-by":"crossref","unstructured":"Terrapon, N., Lombard, V., Drula, E., Coutinho, P.M., and Henrissat, B. (2017) <i>The CAZy database\/the Carbohydrate-Active Enzyme (CAZy) database: principles and usage guidelines<\/i>. <i>In<\/i> <i>A Practical Guide to Using Glycomics Databases,<\/i> ed. by Aoki-Kinoshita, K., Springer, Tokyo.","DOI":"10.1007\/978-4-431-56454-6_6"},{"key":"25","doi-asserted-by":"crossref","unstructured":"Wang, H., Liu, J., Guo, Y., Chen, Y., Zhang, C. et al. (2025) Taxonomic, genomic, and ecological insights into a novel Flavobacteriaceae strain from coastal tidal flats. <i>BMC Microbiol.<\/i>, <b>25<\/b>, 344.","DOI":"10.1186\/s12866-025-04069-2"},{"key":"26","doi-asserted-by":"crossref","unstructured":"Yamashita, A., Zhang, Y., Sanner, M. F., Griffin, J. H., and Mosnier, L. O. (2020) C-terminal residues of activated protein C light chain contribute to its anticoagulant and cytoprotective activities. <i>J. Thromb. Haemost.<\/i>, <b>18<\/b>, 1027-1038.","DOI":"10.1111\/jth.14756"},{"key":"27","doi-asserted-by":"crossref","unstructured":"Yaoi, K., Kondo, H., Noro, N., Suzuki, M., Tsuda, S. et al. (2004) Tandem repeat of a seven-bladed \u03b2-propeller domain in oligoxyloglucan reducing-end-specific cellobiohydrolase. <i>Structure<\/i>, <b>12<\/b>, 1209-1217.","DOI":"10.1016\/j.str.2004.04.020"},{"key":"28","doi-asserted-by":"crossref","unstructured":"Zhou, X., Zheng, W., Li, Y., Pearce, R., Zhang, C. et al. (2022) I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction. <i>Nat. Protoc.<\/i>, <b>17<\/b>, 2326-2353.","DOI":"10.1038\/s41596-022-00728-0"},{"key":"29","doi-asserted-by":"crossref","unstructured":"Zorgani, M. A., Patron, K., and Desvaux, M. (2014) New insight in the structural features of haloadaptation in \u03b1-amylases from halophilic Archaea following homology modeling strategy: folded and stable conformation maintained through low hydrophobicity and highly negative charged surface. <i>J. Comput. Aided Mol. Des.<\/i>, <b>28<\/b>, 721-734.","DOI":"10.1007\/s10822-014-9754-y"}],"container-title":["The Journal of General and Applied Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.jstage.jst.go.jp\/article\/jgam\/advpub\/0\/advpub_2026.07.001\/_pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,8,22]],"date-time":"2026-08-22T05:06:14Z","timestamp":1787375174000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.jstage.jst.go.jp\/article\/jgam\/advpub\/0\/advpub_2026.07.001\/_article"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026]]},"references-count":29,"URL":"https:\/\/doi.org\/10.2323\/jgam.2026.07.001","relation":{},"ISSN":["0022-1260","1349-8037"],"issn-type":[{"value":"0022-1260","type":"print"},{"value":"1349-8037","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026]]},"article-number":"2026.07.001"}}