{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,20]],"date-time":"2025-06-20T04:25:40Z","timestamp":1750393540412},"reference-count":27,"publisher":"American Veterinary Medical Association (AVMA)","license":[{"start":{"date-parts":[[2023,8,14]],"date-time":"2023-08-14T00:00:00Z","timestamp":1691971200000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["ajvr"],"published-print":{"date-parts":[[2023,8,14]]},"abstract":"<jats:title>Abstract<\/jats:title>\n<jats:sec id=\"sc_a1\">\n<jats:title>OBJECTIVE<\/jats:title>\n<jats:p>Evaluate agreement among the antimicrobial susceptibility profiles of <jats:italic>Mannheimia haemolytica<\/jats:italic> or <jats:italic>Pasteurella multocida<\/jats:italic> obtained by transtracheal wash, nasal swab, nasopharyngeal swab, and bronchoalveolar lavage.<\/jats:p>\n<\/jats:sec>\n<jats:sec id=\"sc_a2\">\n<jats:title>ANIMALS<\/jats:title>\n<jats:p>100 Holstein and Holstein-cross bull calves with bovine respiratory disease.<\/jats:p>\n<\/jats:sec>\n<jats:sec id=\"sc_a3\">\n<jats:title>METHODS<\/jats:title>\n<jats:p>Calves &gt; 30 days old with naturally occurring bovine respiratory disease were sampled sequentially by nasal swab, nasopharyngeal swab, transtracheal wash, and then bronchoalveolar lavage. Samples were cultured, and for each antimicrobial, the MIC of 50% and 90% of isolates was calculated, and isolates were categorized as susceptible or not. Categorical discrepancies were recorded. Percent positive agreement and kappa values were calculated between isolates for each of the sampling methods.<\/jats:p>\n<\/jats:sec>\n<jats:sec id=\"sc_a4\">\n<jats:title>RESULTS<\/jats:title>\n<jats:p>Antimicrobial susceptibility varied by pathogen and resistance to enrofloxacin, florfenicol, tilmicosin, and spectinomycin was detected. Minor discrepancies were seen in up to 29% of classifications, with enrofloxacin, penicillin, and florfenicol more frequently represented than other drugs. Very major and major discrepancies were seen when comparing florfenicol (1.9%) and tulathromycin (3.8 to 4.9%) across sampling methods. Some variability was seen in agreement for enrofloxacin for several comparisons (8.3 to 18.4%).<\/jats:p>\n<\/jats:sec>\n<jats:sec id=\"sc_a5\">\n<jats:title>CLINICAL RELEVANCE<\/jats:title>\n<jats:p>Susceptibility testing of isolates from 1  location of the respiratory tract can reliably represent susceptibility in other locations. Nevertheless, the potential for imperfect agreement between sampling methods does exist. The level of restraint available, the skill level of the person performing the sampling, the age and size of the animal, disease status, and treatment history all must be factored into which test is most appropriate for a given situation.<\/jats:p>\n<\/jats:sec>","DOI":"10.2460\/ajvr.23.06.0140","type":"journal-article","created":{"date-parts":[[2023,8,9]],"date-time":"2023-08-09T13:47:32Z","timestamp":1691588852000},"page":"1-9","source":"Crossref","is-referenced-by-count":1,"title":["Agreement of antimicrobial susceptibility testing of Pasteurella multocida and Mannheimia haemolytica isolates from preweaned dairy calves with bovine respiratory disease"],"prefix":"10.2460","author":[{"given":"Brent C.","family":"Credille","sequence":"first","affiliation":[{"name":"Food Animal Health and Management Program, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sarah F.","family":"Capik","sequence":"additional","affiliation":[{"name":"Texas A&M AgriLife Research, Texas A&M University System, Amarillo, TX"},{"name":"Department of Veterinary Pathobiology, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Allison","family":"Credille","sequence":"additional","affiliation":[{"name":"Food Animal Health and Management Program, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Beate M.","family":"Crossley","sequence":"additional","affiliation":[{"name":"California Animal Health and Food Safety Laboratory System, University of California-Davis, Davis, CA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Pat","family":"Blanchard","sequence":"additional","affiliation":[{"name":"California Animal Health and Food Safety Laboratory System, University of California-Davis, Davis, CA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Amelia R.","family":"Woolums","sequence":"additional","affiliation":[{"name":"Department of Pathobiology and Population Medicine, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Terry W.","family":"Lehenbauer","sequence":"additional","affiliation":[{"name":"Veterinary Medicine Teaching and Research Center, School of Veterinary Medicine, University of California-Davis, Tulare, CA"},{"name":"Department of Population Health and Reproduction, School of Veterinary Medicine, University of California-Davis, Davis, CA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"1272","reference":[{"key":"B1","year":"2007","unstructured":"National Animal Health Monitoring System (NAHMS). In: US Animal and Plant Health Inspection Service, ed. Dairy 2007 Part III: Reference of Dairy Cattle Health and Management Practices in the United States; 2007."},{"issue":"2","key":"B2","series-title":"Anim Health Res Rev","first-page":"143","article-title":"Economics of respiratory disease in dairy replacement heifers","volume":"21","author":"Overton MW","year":"2020","unstructured":"Overton MW. Economics of respiratory disease in dairy replacement heifers. Anim Health Res Rev. 2020;21(2):143\u2013148. doi:10.1017\/S1466252320000250"},{"issue":"2","key":"B3","series-title":"J Dairy Sci","first-page":"1583","article-title":"Preweaning cost of bovine respiratory disease (BRD) and cost-benefit of implementation of preventative measures in calves on California dairies: the BRD 10K study","volume":"103","author":"Dubrovsky SA","year":"2020","unstructured":"Dubrovsky SA, Van Eenennaam AL, Aly SS, et al. Preweaning cost of bovine respiratory disease (BRD) and cost-benefit of implementation of preventative measures in calves on California dairies: the BRD 10K study. J Dairy Sci. 2020;103(2):1583\u20131597. doi:10.3168\/jds.2018-15501"},{"issue":"6","key":"B4","series-title":"J Dairy Sci","first-page":"7008","article-title":"Effect of preweaning disease on the reproductive performance and first-lactation milk production of heifers in a large dairy herd","volume":"104","author":"Abuelo A","year":"2021","unstructured":"Abuelo A, Cullens F, Brester JL. Effect of preweaning disease on the reproductive performance and first-lactation milk production of heifers in a large dairy herd. J Dairy Sci. 2021;104(6):7008\u20137017. doi:10.3168\/jds.2020-19791"},{"issue":"10","key":"B5","series-title":"J Dairy Sci","first-page":"9464","article-title":"Prevalence and temporal trends in antimicrobial resistance of bovine respiratory disease pathogen isolates submitted to the Wisconsin Veterinary Diagnostic Laboratory: 2008\u20132017","volume":"103","author":"Holschbach CL","year":"2020","unstructured":"Holschbach CL, Aulik N, Poulsen K, Ollivett TL. Prevalence and temporal trends in antimicrobial resistance of bovine respiratory disease pathogen isolates submitted to the Wisconsin Veterinary Diagnostic Laboratory: 2008\u20132017. J Dairy Sci. 2020;103(10):9464\u20139472. doi:10.3168\/jds.2019-17570"},{"key":"B6","series-title":"Prev Vet Med","first-page":"105506","article-title":"Etiology and risk factors for bovine respiratory disease in pre-weaned calves on California dairies and calf ranches","volume":"197","author":"Deepak","year":"2021","unstructured":"Deepak, Aly SS, Love WJ, et al. Etiology and risk factors for bovine respiratory disease in pre-weaned calves on California dairies and calf ranches. Prev Vet Med. 2021;197:105506. doi:10.1016\/j.prevetmed.2021.105506"},{"issue":"6","key":"B7","series-title":"J Antimicro Chemother","first-page":"1460","article-title":"Applying definitions for multidrug resistance, extensive drug resistance and pandrug resistance to clinically significant livestock and companion animal bacterial pathogens","volume":"73","author":"Sweeney MT","year":"2018","unstructured":"Sweeney MT, Lubbers BV, Schwarz S, Watts JL. Applying definitions for multidrug resistance, extensive drug resistance and pandrug resistance to clinically significant livestock and companion animal bacterial pathogens. J Antimicro Chemother. 2018;73(6):1460\u20131463. doi:10.1093\/jac\/dky043"},{"issue":"2","key":"B8","series-title":"J Vet Diagn Invest","first-page":"413","article-title":"Antimicrobial multidrug resistance and coresistance patterns of Mannheimia haemolytica isolated from bovine respiratory disease cases\u2013a three-year (2009\u20132011) retrospective analysis","volume":"25","author":"Lubbers BV","year":"2013","unstructured":"Lubbers BV, Hanzlicek GA. Antimicrobial multidrug resistance and coresistance patterns of Mannheimia haemolytica isolated from bovine respiratory disease cases\u2013a three-year (2009\u20132011) retrospective analysis. J Vet Diagn Invest. 2013;25(2):413\u2013417. doi:10.1177\/1040638713485227"},{"issue":"3","key":"B9","series-title":"J Anim Sci","first-page":"1124","article-title":"Prevalence of multi drug antimicrobial resistance in isolated from high-risk stocker cattle at arrival and two weeks after processing","volume":"95","author":"Snyder E","year":"2017","unstructured":"Snyder E, Credille B, Berghaus R, Gigu\u00e8re S. Prevalence of multi drug antimicrobial resistance in isolated from high-risk stocker cattle at arrival and two weeks after processing. 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Comparison of pathogenic bacteria in the upper and lower respiratory tracts of cattle either directly transported to a feedlot or co-mingled at auction markets prior to feedlot placement. Front Vet Sci. 2022;9:1026470. doi:10.3389\/fvets.2022.1026470"},{"issue":"1","key":"B13","series-title":"Anim Microbiome","first-page":"49","article-title":"Does swab type matter? Comparing methods for Mannheimia haemolytica recovery and upper respiratory microbiome characterization in feedlot cattle","volume":"4","author":"Crosby WB","year":"2022","unstructured":"Crosby WB, Pinnell LJ, Richeson JT, et al. Does swab type matter? Comparing methods for Mannheimia haemolytica recovery and upper respiratory microbiome characterization in feedlot cattle. Anim Microbiome. 2022;4(1):49. doi:10.1186\/s42523-022-00197-6"},{"issue":"3","key":"B14","series-title":"Am J Vet Res","first-page":"350","article-title":"Comparison of the diagnostic performance of bacterial culture of nasopharyngeal swab and bronchoalveolar lavage fluid samples obtained from calves with bovine respiratory disease","volume":"78","author":"Capik SF","year":"2017","unstructured":"Capik SF, White BJ, Lubbers BV, et al. Comparison of the diagnostic performance of bacterial culture of nasopharyngeal swab and bronchoalveolar lavage fluid samples obtained from calves with bovine respiratory disease. Am J Vet Res. 2017;78(3):350\u2013358. doi:10.2460\/ajvr.78.3.350"},{"issue":"2","key":"B15","series-title":"Anim Health Res Rev","first-page":"145","article-title":"Timely diagnosis of dairy calf respiratory disease using a standardized scoring system","volume":"15","author":"McGuirk SM","year":"2014","unstructured":"McGuirk SM, Peek SF. Timely diagnosis of dairy calf respiratory disease using a standardized scoring system. Anim Health Res Rev. 2014;15(2):145\u2013147. doi:10.1017\/S1466252314000267"},{"issue":"1","key":"B16","series-title":"Biometrics","first-page":"159","article-title":"The measurement of observer agreement for categorical data","volume":"33","author":"Landis JR","year":"1977","unstructured":"Landis JR, Koch GG. The measurement of observer agreement for categorical data. Biometrics. 1977;33(1):159\u2013174. doi:10.2307\/2529310"},{"issue":"3","key":"B17","series-title":"Can J Comp Med","first-page":"181","article-title":"Wide distribution of Pasteurella haemolytica type 1 over the nasal mucosa of cattle","volume":"35","author":"Pass DA","year":"1971","unstructured":"Pass DA, Thomson RG. Wide distribution of Pasteurella haemolytica type 1 over the nasal mucosa of cattle. Can J Comp Med. 1971;35(3):181\u2013186. [4254890]"},{"issue":"3","key":"B18","series-title":"Can J Vet Res","first-page":"177","article-title":"Changes in the bacterial flora of the upper and lower respiratory tracts and bronchoalveolar lavage differential cell counts in feedlot calves treated for respiratory disease","volume":"56","author":"Allen JW","year":"1992","unstructured":"Allen JW, Viel L, Bateman KG, Rosendal S. Changes in the bacterial flora of the upper and lower respiratory tracts and bronchoalveolar lavage differential cell counts in feedlot calves treated for respiratory disease. Can J Vet Res. 1992;56(3):177\u2013183."},{"issue":"1","key":"B19","series-title":"Vet Rec","first-page":"22","article-title":"Use of deep nasopharyngeal swabs as a predictive diagnostic method for natural respiratory infections in calves","volume":"160","author":"Godinho KS","year":"2007","unstructured":"Godinho KS, Sarasola P, Renoult E, et al. Use of deep nasopharyngeal swabs as a predictive diagnostic method for natural respiratory infections in calves. Vet Rec. 2007;160(1):22\u201325. doi:10.1136\/vr.160.1.22"},{"issue":"4","key":"B20","series-title":"Can J Comp Med","first-page":"237","article-title":"Nasal bacterial flora of calves in healthy and in pneumonia-prone herds","volume":"33","author":"Magwood SE","year":"1969","unstructured":"Magwood SE, Barnum DA, Thomson RG. Nasal bacterial flora of calves in healthy and in pneumonia-prone herds. Can J Comp Med. 1969;33(4):237\u2013243."},{"issue":"1","key":"B21","series-title":"J Clin Microbiol","first-page":"327","article-title":"Comparison of Pasteurella spp. simultaneously isolated from nasal and transtracheal swabs from cattle with clinical signs of bovine respiratory disease","volume":"38","author":"DeRosa DC","year":"2000","unstructured":"DeRosa DC, Mechor GD, Staats JJ, Chengappa MM, Shryock TR. Comparison of Pasteurella spp. simultaneously isolated from nasal and transtracheal swabs from cattle with clinical signs of bovine respiratory disease. J Clin Microbiol. 2000;38(1):327\u2013332. doi:10.1128\/JCM.38.1.327-332.2000"},{"key":"B22","first-page":"122","author":"Capik SF","year":"2019","unstructured":"Capik SF, Richeson J, Lubbers BV, Loy JD, Cernicchiaro N, Beyene TJ. Between-location heterogeneity of bilateral nasopharyngeal swabs and bronchoalveolar lavages based on M ALDI-TOF identification of bovine respiratory disease pathogens. In: Bovine Respiratory Disease Symposium 2019, Denver, CO. BRDS; 2019:122."},{"issue":"5","key":"B23","series-title":"J Vet Diagn Invest","first-page":"568","article-title":"Characterization of Mannheimia haemolytica in beef calves via nasopharyngeal culture and pulsed-field gel electrophoresis","volume":"27","author":"Capik SF","year":"2015","unstructured":"Capik SF, White BJ, Lubbers BV, et al. Characterization of Mannheimia haemolytica in beef calves via nasopharyngeal culture and pulsed-field gel electrophoresis. J Vet Diagn Invest. 2015;27(5):568\u2013575. doi:10.1177\/1040638715597724"},{"issue":"1","key":"B24","series-title":"BMC genomics","first-page":"982","article-title":"Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes","volume":"17","author":"Clawson ML","year":"2016","unstructured":"Clawson ML, Murray RW, Sweeney MT, et al. Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes. BMC genomics 2016;17(1):982. doi:10.1186\/s12864-016-3316-8"},{"key":"B25","series-title":"Encyclopedia of Biostatistics","article-title":"Kappa and its dependence on marginal rates","author":"Cook RJ","year":"2005","unstructured":"Cook RJ. 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