{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,23]],"date-time":"2026-01-23T10:12:22Z","timestamp":1769163142941,"version":"3.49.0"},"reference-count":58,"publisher":"American Dairy Science Association","issue":"4","license":[{"start":{"date-parts":[[2013,4,1]],"date-time":"2013-04-01T00:00:00Z","timestamp":1364774400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2019,1,10]],"date-time":"2019-01-10T00:00:00Z","timestamp":1547078400000},"content-version":"vor","delay-in-days":2110,"URL":"http:\/\/www.elsevier.com\/open-access\/userlicense\/1.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Journal of Dairy Science"],"published-print":{"date-parts":[[2013,4]]},"DOI":"10.3168\/jds.2012-5814","type":"journal-article","created":{"date-parts":[[2013,1,30]],"date-time":"2013-01-30T22:16:59Z","timestamp":1359584219000},"page":"2583-2595","source":"Crossref","is-referenced-by-count":16,"title":["Gene coexpression network analysis identifies genes and biological processes shared among anterior pituitary and brain areas that affect estrous behavior in dairy cows"],"prefix":"10.3168","volume":"96","author":[{"given":"A.","family":"Kommadath","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"M.F.W.","family":"te Pas","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"M.A.","family":"Smits","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"1747","reference":[{"key":"10.3168\/jds.2012-5814_bib0005","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1038\/75556","article-title":"Gene ontology: Tool for the unification of biology","volume":"25","author":"Ashburner","year":"2000","journal-title":"Nat. Genet."},{"key":"10.3168\/jds.2012-5814_bib0010","doi-asserted-by":"crossref","first-page":"889","DOI":"10.1677\/jme.1.01799","article-title":"Gene expression profiling of bovine endometrium during the oestrous cycle: Detection of molecular pathways involved in functional changes","volume":"34","author":"Bauersachs","year":"2005","journal-title":"J. Mol. Endocrinol."},{"key":"10.3168\/jds.2012-5814_bib0015","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","article-title":"Controlling the false discovery rate: A practical and powerful approach to multiple testing","volume":"57","author":"Benjamini","year":"1995","journal-title":"J. R. Stat. Soc., B"},{"key":"10.3168\/jds.2012-5814_bib0020","doi-asserted-by":"crossref","first-page":"20","DOI":"10.1016\/j.jtbi.2011.02.021","article-title":"A simple mathematical model of the bovine estrous cycle: Follicle development and endocrine interactions","volume":"278","author":"Boer","year":"2011","journal-title":"J. Theor. Biol."},{"key":"10.3168\/jds.2012-5814_bib0025","doi-asserted-by":"crossref","first-page":"449","DOI":"10.1016\/S0378-4320(00)00076-2","article-title":"Nutritional interactions with reproductive performance in dairy cattle","volume":"60-61","author":"Butler","year":"2000","journal-title":"Anim. Reprod. Sci."},{"key":"10.3168\/jds.2012-5814_bib0030","doi-asserted-by":"crossref","first-page":"589","DOI":"10.1186\/1471-2164-11-589","article-title":"Is human blood a good surrogate for brain tissue in transcriptional studies?","volume":"11","author":"Cai","year":"2010","journal-title":"BMC Genomics"},{"key":"10.3168\/jds.2012-5814_bib0035","unstructured":"Carlson, M. 2011. org.Bt.eg.db: Genome wide annotation for Bovine. R package version 2.8.0. Accessed June 2011. http:\/\/www.bioconductor.org\/packages\/2.8\/data\/annotation\/html\/org.Bt.eg.db.html."},{"key":"10.3168\/jds.2012-5814_bib0040","doi-asserted-by":"crossref","first-page":"S3","DOI":"10.1186\/1753-6561-3-s4-s3","article-title":"sigReannot: an oligo-set re-annotation pipeline based on similarities with the Ensembl transcripts and Unigene clusters","volume":"3","author":"Casel","year":"2009","journal-title":"BMC Proc."},{"key":"10.3168\/jds.2012-5814_bib0045","doi-asserted-by":"crossref","first-page":"1963","DOI":"10.1016\/j.theriogenology.2005.04.015","article-title":"Analysis of gene expression in non-regressed and regressed bovine corpus luteum tissue using a customized ovarian cDNA array","volume":"64","author":"Casey","year":"2005","journal-title":"Theriogenology"},{"key":"10.3168\/jds.2012-5814_bib0050","doi-asserted-by":"crossref","first-page":"611","DOI":"10.1093\/nar\/20.3.611","article-title":"A gene family of HMG-box transcription factors with homology to TCF-1","volume":"20","author":"Castrop","year":"1992","journal-title":"Nucleic Acids Res."},{"key":"10.3168\/jds.2012-5814_bib0055","doi-asserted-by":"crossref","DOI":"10.1126\/scisignal.1162329","article-title":"Regulation of P2X2 receptors by the neuronal calcium sensor VILIP1","volume":"1","author":"Chaumont","year":"2008","journal-title":"Sci. Signal."},{"key":"10.3168\/jds.2012-5814_bib0060","doi-asserted-by":"crossref","first-page":"561","DOI":"10.1016\/j.tree.2005.05.018","article-title":"Genes, brains and mammalian social bonds","volume":"20","author":"Curley","year":"2005","journal-title":"Trends Ecol. Evol."},{"key":"10.3168\/jds.2012-5814_bib0065","doi-asserted-by":"crossref","first-page":"20","DOI":"10.1186\/1471-2164-11-20","article-title":"Gene expression profiling in C57BL\/6J and A\/J mouse inbred strains reveals gene networks specific for brain regions independent of genetic background","volume":"11","author":"de Jong","year":"2010","journal-title":"BMC Genomics"},{"key":"10.3168\/jds.2012-5814_bib0070","doi-asserted-by":"crossref","first-page":"900","DOI":"10.1126\/science.1158668","article-title":"Oxytocin, vasopressin, and the neurogenetics of Sociality","volume":"322","author":"Donaldson","year":"2008","journal-title":"Science"},{"key":"10.3168\/jds.2012-5814_bib0075","doi-asserted-by":"crossref","first-page":"14863","DOI":"10.1073\/pnas.95.25.14863","article-title":"Cluster analysis and display of genome-wide expression patterns","volume":"95","author":"Eisen","year":"1998","journal-title":"Proc. Natl. Acad. Sci. USA."},{"key":"10.3168\/jds.2012-5814_bib0080","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1093\/bioinformatics\/btl567","article-title":"Using GOstats to test gene lists for GO term association","volume":"23","author":"Falcon","year":"2007","journal-title":"Bioinformatics"},{"key":"10.3168\/jds.2012-5814_bib0085","doi-asserted-by":"crossref","first-page":"463","DOI":"10.1007\/s00335-007-9043-3","article-title":"Weighted gene coexpression network analysis strategies applied to mouse weight","volume":"6","author":"Fuller","year":"2007","journal-title":"Mamm. Genome."},{"key":"10.3168\/jds.2012-5814_bib0090","doi-asserted-by":"crossref","first-page":"221","DOI":"10.1016\/S0959-4388(96)80076-6","article-title":"The amygdala and emotion","volume":"6","author":"Gallagher","year":"1996","journal-title":"Curr. Opin. Neurobiol."},{"key":"10.3168\/jds.2012-5814_bib0095","doi-asserted-by":"crossref","first-page":"8","DOI":"10.1186\/1471-2202-12-8","article-title":"Microarray-based gene expression profiles of silkworm brains","volume":"12","author":"Gan","year":"2011","journal-title":"BMC Neurosci."},{"key":"10.3168\/jds.2012-5814_bib0100","doi-asserted-by":"crossref","first-page":"1144","DOI":"10.1017\/S1751731108002358","article-title":"Integration of physiological mechanisms that influence fertility in dairy cows","volume":"2","author":"Garnsworthy","year":"2008","journal-title":"Animal"},{"key":"10.3168\/jds.2012-5814_bib0105","doi-asserted-by":"crossref","first-page":"R80","DOI":"10.1186\/gb-2004-5-10-r80","article-title":"Bioconductor: Open software development for computational biology and bioinformatics","volume":"5","author":"Gentleman","year":"2004","journal-title":"Genome Biol."},{"key":"10.3168\/jds.2012-5814_bib0110","doi-asserted-by":"crossref","first-page":"e130","DOI":"10.1371\/journal.pgen.0020130","article-title":"Integrating genetics and network analysis to characterize genes related to mouse weight","volume":"2","author":"Ghazalpour","year":"2006","journal-title":"PLoS Genet."},{"key":"10.3168\/jds.2012-5814_bib0115","doi-asserted-by":"crossref","first-page":"61","DOI":"10.1007\/BF02935540","article-title":"Role of the growth-associated protein B-50\/GAP-43 in neuronal plasticity","volume":"5","author":"Gispen","year":"1991","journal-title":"Mol. Neurobiol."},{"key":"10.3168\/jds.2012-5814_bib0120","doi-asserted-by":"crossref","first-page":"e1000117","DOI":"10.1371\/journal.pcbi.1000117","article-title":"Geometric interpretation of gene coexpression network analysis","volume":"4","author":"Horvath","year":"2008","journal-title":"PLoS Comput. Biol."},{"key":"10.3168\/jds.2012-5814_bib0125","doi-asserted-by":"crossref","first-page":"17402","DOI":"10.1073\/pnas.0608396103","article-title":"Analysis of oncogenic signaling networks in glioblastoma identifies ASPM as a novel molecular target","volume":"103","author":"Horvath","year":"2006","journal-title":"Proc. Natl. Acad. Sci. USA."},{"key":"10.3168\/jds.2012-5814_bib0130","doi-asserted-by":"crossref","first-page":"i222","DOI":"10.1093\/bioinformatics\/btm222","article-title":"Systematic discovery of functional modules and context-specific functional annotation of human genome","volume":"23","author":"Huang","year":"2007","journal-title":"Bioinformatics"},{"issue":"Suppl. 1","key":"10.3168\/jds.2012-5814_bib0135","doi-asserted-by":"crossref","first-page":"S233","DOI":"10.1093\/bioinformatics\/18.suppl_1.S233","article-title":"Discovering regulatory and signalling circuits in molecular interaction networks","volume":"18","author":"Ideker","year":"2002","journal-title":"Bioinformatics"},{"key":"10.3168\/jds.2012-5814_bib0140","doi-asserted-by":"crossref","first-page":"3167","DOI":"10.1210\/en.2007-1227","article-title":"Progesterone and estrogen regulate oxidative metabolism in brain mitochondria","volume":"149","author":"Irwin","year":"2008","journal-title":"Endocrinology"},{"key":"10.3168\/jds.2012-5814_bib0145","doi-asserted-by":"crossref","first-page":"2383","DOI":"10.1210\/me.2008-0135","article-title":"Minireview: The Wnt signaling pathway effector TCF7L2 and type 2 diabetes mellitus","volume":"22","author":"Jin","year":"2008","journal-title":"Mol. Endocrinol."},{"key":"10.3168\/jds.2012-5814_bib0150","doi-asserted-by":"crossref","first-page":"1513","DOI":"10.1523\/JNEUROSCI.10-05-01513.1990","article-title":"Steroid hormone regulation of ribosomal RNA in rat hypothalamus: Early detection using in situ hybridization and precursor-product ribosomal DNA probes","volume":"10","author":"Jones","year":"1990","journal-title":"J. Neurosci."},{"key":"10.3168\/jds.2012-5814_bib0155","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1093\/nar\/28.1.27","article-title":"KEGG: Kyoto Encyclopedia of Genes and Genomes","volume":"28","author":"Kanehisa","year":"2000","journal-title":"Nucleic Acids Res."},{"key":"10.3168\/jds.2012-5814_bib0160","unstructured":"Kommadath, A. 2012. Genomic regulation of oestrous behaviour in dairy cows. PhD Thesis. Wageningen University, Wageningen, the Netherlands."},{"key":"10.3168\/jds.2012-5814_bib0165","doi-asserted-by":"crossref","first-page":"1297","DOI":"10.1017\/S1751731110000303","article-title":"Gene expression patterns in anterior pituitary associated with quantitative measure of oestrous behaviour in dairy cows","volume":"4","author":"Kommadath","year":"2010","journal-title":"Animal"},{"key":"10.3168\/jds.2012-5814_bib0170","doi-asserted-by":"crossref","first-page":"200","DOI":"10.1186\/1471-2164-12-200","article-title":"Gene expression patterns in four brain areas associate with quantitative measure of estrous behavior in dairy cows","volume":"12","author":"Kommadath","year":"2011","journal-title":"BMC Genomics"},{"key":"10.3168\/jds.2012-5814_bib0175","doi-asserted-by":"crossref","DOI":"10.1186\/1752-0509-1-54","article-title":"Eigengene networks for studying the relationships between co-expression modules","volume":"1","author":"Langfelder","year":"2007","journal-title":"BMC Syst. Biol."},{"key":"10.3168\/jds.2012-5814_bib0180","doi-asserted-by":"crossref","DOI":"10.1186\/1471-2105-9-559","article-title":"WGCNA: An R package for weighted correlation network analysis","volume":"9","author":"Langfelder","year":"2008","journal-title":"BMC Bioinformatics"},{"key":"10.3168\/jds.2012-5814_bib0185","doi-asserted-by":"crossref","first-page":"719","DOI":"10.1093\/bioinformatics\/btm563","article-title":"Defining clusters from a hierarchical cluster tree: The Dynamic Tree Cut package for R","volume":"24","author":"Langfelder","year":"2008","journal-title":"Bioinformatics"},{"key":"10.3168\/jds.2012-5814_bib0190","doi-asserted-by":"crossref","first-page":"731","DOI":"10.1016\/j.coph.2008.07.001","article-title":"Oxytocin and the maternal brain","volume":"8","author":"Leng","year":"2008","journal-title":"Curr. Opin. Pharmacol."},{"key":"10.3168\/jds.2012-5814_bib0195","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1016\/j.anireprosci.2003.10.009","article-title":"Relationship between level of milk production and estrous behavior of lactating dairy cows","volume":"81","author":"Lopez","year":"2004","journal-title":"Anim. Reprod. Sci."},{"key":"10.3168\/jds.2012-5814_bib0200","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1186\/2045-8118-8-10","article-title":"Transcriptome signature of the adult mouse choroid plexus","volume":"8","author":"Marques","year":"2011","journal-title":"Fluids and Barriers of the CNS"},{"key":"10.3168\/jds.2012-5814_bib0205","first-page":"279","article-title":"Oxidative and glicolytic metabolism of the frontal cortex (latero-frontal) and of the posterior cortex (latero-occipital) in relation with the sexual activity of the rat","volume":"3","author":"Men\u00e9ndez-Patterson","year":"1976","journal-title":"Reproduccion"},{"key":"10.3168\/jds.2012-5814_bib0210","doi-asserted-by":"crossref","first-page":"1410","DOI":"10.1523\/JNEUROSCI.4098-07.2008","article-title":"A systems level analysis of transcriptional changes in Alzheimer's disease and normal aging","volume":"28","author":"Miller","year":"2008","journal-title":"J. Neurosci."},{"key":"10.3168\/jds.2012-5814_bib0215","doi-asserted-by":"crossref","first-page":"229","DOI":"10.1016\/j.ejphar.2003.08.109","article-title":"Neural, hormonal and genetic mechanisms for the activation of brain and behavior","volume":"480","author":"Mong","year":"2003","journal-title":"Eur. J. Pharmacol."},{"key":"10.3168\/jds.2012-5814_bib0220","doi-asserted-by":"crossref","first-page":"550","DOI":"10.1038\/sj.mp.4001493","article-title":"Hormonal symphony: Steroid orchestration of gene modules for sociosexual behaviors","volume":"9","author":"Mong","year":"2004","journal-title":"Mol. Psychiatry."},{"key":"10.3168\/jds.2012-5814_bib0225","doi-asserted-by":"crossref","first-page":"17973","DOI":"10.1073\/pnas.0605938103","article-title":"Conservation and evolution of gene coexpression networks in human and chimpanzee brains","volume":"103","author":"Oldham","year":"2006","journal-title":"Proc. Natl. Acad. Sci. USA."},{"key":"10.3168\/jds.2012-5814_bib0230","doi-asserted-by":"crossref","first-page":"1271","DOI":"10.1038\/nn.2207","article-title":"Functional organization of the transcriptome in human brain","volume":"11","author":"Oldham","year":"2008","journal-title":"Nat. Neurosci."},{"key":"10.3168\/jds.2012-5814_bib0235","doi-asserted-by":"crossref","first-page":"447","DOI":"10.1677\/joe.1.05897","article-title":"Hormone-driven mechanisms in the central nervous system facilitate the analysis of mammalian behaviours","volume":"184","author":"Pfaff","year":"2005","journal-title":"J. Endocrinol."},{"key":"10.3168\/jds.2012-5814_bib0240","doi-asserted-by":"crossref","first-page":"e3911","DOI":"10.1371\/journal.pone.0003911","article-title":"Human gene coexpression landscape: Confident network derived from tissue transcriptomic profiles","volume":"3","author":"Prieto","year":"2008","journal-title":"PLoS ONE"},{"key":"10.3168\/jds.2012-5814_bib0245","doi-asserted-by":"crossref","first-page":"1045","DOI":"10.1096\/fj.05-5460rev","article-title":"Thy-1 as a regulator of cell-cell and cell-matrix interactions in axon regeneration, apoptosis, adhesion, migration, cancer, and fibrosis","volume":"20","author":"Rege","year":"2006","journal-title":"FASEB J."},{"key":"10.3168\/jds.2012-5814_bib0250","doi-asserted-by":"crossref","first-page":"389","DOI":"10.1111\/j.1745-7254.2005.00083.x","article-title":"Role of amygdala in mediating sexual and emotional behavior via coupled nitric oxide release","volume":"26","author":"Salamon","year":"2005","journal-title":"Acta Pharmacol. Sin."},{"key":"10.3168\/jds.2012-5814_bib0255","doi-asserted-by":"crossref","first-page":"201","DOI":"10.1152\/physiolgenomics.00047.2010","article-title":"Bovine pretransfer endometrium and embryo transcriptome fingerprints as predictors of pregnancy success after embryo transfer","volume":"42","author":"Salilew-Wondim","year":"2010","journal-title":"Physiol. Genomics."},{"key":"10.3168\/jds.2012-5814_bib0260","doi-asserted-by":"crossref","first-page":"2498","DOI":"10.1101\/gr.1239303","article-title":"Cytoscape: A software environment for integrated models of biomolecular interaction networks","volume":"13","author":"Shannon","year":"2003","journal-title":"Genome Res."},{"key":"10.3168\/jds.2012-5814_bib0265","series-title":"Bioinformatics and Computational Biology Solutions using R and Bioconductor.","first-page":"397","article-title":"Limma: Linear models for microarray data","author":"Smyth","year":"2005"},{"key":"10.3168\/jds.2012-5814_bib0270","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1017\/S1357729800050074","article-title":"The economics of fertility in the dairy herd","volume":"68","author":"Stott","year":"1999","journal-title":"Anim. Sci."},{"key":"10.3168\/jds.2012-5814_bib0275","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1016\/j.neulet.2005.06.055","article-title":"Ndrg2 promotes neurite outgrowth of NGF-differentiated PC12 cells","volume":"388","author":"Takahashi","year":"2005","journal-title":"Neurosci. Lett."},{"key":"10.3168\/jds.2012-5814_bib0280","doi-asserted-by":"crossref","first-page":"2439","DOI":"10.1074\/jbc.275.4.2439","article-title":"Neurofilament-L is a protein phosphatase-1-binding protein associated with neuronal plasma membrane and post-synaptic density","volume":"275","author":"Terry-Lorenzo","year":"2000","journal-title":"J. Biol. Chem."},{"key":"10.3168\/jds.2012-5814_bib0285","doi-asserted-by":"crossref","first-page":"77","DOI":"10.1186\/1477-7827-2-77","article-title":"cDNA microarray analysis of bovine embryo gene expression profiles during the pre-implantation period","volume":"2","author":"Ushizawa","year":"2004","journal-title":"Reprod. Biol. Endocrinol."},{"key":"10.3168\/jds.2012-5814_bib0290","doi-asserted-by":"crossref","first-page":"17","DOI":"10.2202\/1544-6115.1128","article-title":"A general framework for weighted gene co-expression network analysis","volume":"4","author":"Zhang","year":"2005","journal-title":"Stat. Appl. Genet. Mol. Biol."}],"container-title":["Journal of Dairy Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0022030213000702?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0022030213000702?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0022030213000702","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,11,8]],"date-time":"2024-11-08T22:01:12Z","timestamp":1731103272000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0022030213000702"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,4]]},"references-count":58,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2013,4]]}},"alternative-id":["S0022030213000702"],"URL":"https:\/\/doi.org\/10.3168\/jds.2012-5814","relation":{},"ISSN":["0022-0302"],"issn-type":[{"value":"0022-0302","type":"print"}],"subject":[],"published":{"date-parts":[[2013,4]]}}}