{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,23]],"date-time":"2026-01-23T06:17:58Z","timestamp":1769149078783,"version":"3.49.0"},"reference-count":40,"publisher":"American Dairy Science Association","issue":"11","license":[{"start":{"date-parts":[[2016,11,1]],"date-time":"2016-11-01T00:00:00Z","timestamp":1477958400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"}],"funder":[{"name":"the Agroscope research programs REDYMO"},{"name":"Microbial Diversity"}],"content-domain":{"domain":["journalofdairyscience.org","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Dairy Science"],"published-print":{"date-parts":[[2016,11]]},"DOI":"10.3168\/jds.2016-11076","type":"journal-article","created":{"date-parts":[[2016,8,30]],"date-time":"2016-08-30T02:52:24Z","timestamp":1472525544000},"page":"8622-8632","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":37,"title":["Short communication: Heat-resistant Escherichia coli as potential persistent reservoir of extended-spectrum \u03b2-lactamases and Shiga toxin-encoding phages in dairy"],"prefix":"10.3168","volume":"99","author":[{"given":"Roger","family":"Marti","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Maite","family":"Muniesa","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michael","family":"Schmid","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Christian H.","family":"Ahrens","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Javorka","family":"Naskova","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"J\u00f6rg","family":"Hummerjohann","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"1747","reference":[{"key":"10.3168\/jds.2016-11076_bib0005","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/S0168-1656(01)00293-0","article-title":"The bacterial ParA-ParB partitioning proteins","volume":"91","author":"Bignell","year":"2001","journal-title":"J. Biotechnol."},{"key":"10.3168\/jds.2016-11076_bib0010","unstructured":"BLAST (Basic Local Alignment Search Tool). 2016. National Center for Biotechnology Information, National Library of Medicine, National Institute of Health, Bethesda, MD. Accessed February 2016. https:\/\/blast.ncbi.nlm.nih.gov\/Blast.cgi."},{"key":"10.3168\/jds.2016-11076_bib0015","doi-asserted-by":"crossref","first-page":"e15467","DOI":"10.1371\/journal.pone.0015467","article-title":"Heat resistance mediated by a new plasmid encoded Clp ATPase, ClpK, as a possible novel mechanism for nosocomial persistence of Klebsiella pneumoniae.","volume":"5","author":"Bojer","year":"2010","journal-title":"PLoS ONE"},{"key":"10.3168\/jds.2016-11076_bib0020","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1016\/j.plasmid.2015.04.009","article-title":"IncI shufflons: Assembly issues in the next-generation sequencing era","volume":"80","author":"Brouwer","year":"2015","journal-title":"Plasmid"},{"key":"10.3168\/jds.2016-11076_bib0025","doi-asserted-by":"crossref","first-page":"969","DOI":"10.1128\/AAC.01009-09","article-title":"Updated functional classification of beta-lactamases","volume":"54","author":"Bush","year":"2010","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.3168\/jds.2016-11076_bib0030","doi-asserted-by":"crossref","first-page":"2227","DOI":"10.1128\/AAC.01707-08","article-title":"Resistance plasmid families in Enterobacteriaceae.","volume":"53","author":"Carattoli","year":"2009","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.3168\/jds.2016-11076_bib0035","doi-asserted-by":"crossref","first-page":"3895","DOI":"10.1128\/AAC.02412-14","article-title":"In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing","volume":"58","author":"Carattoli","year":"2014","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.3168\/jds.2016-11076_bib0040","unstructured":"CDC. 2013. Antibiotic Resistance Threats in the United States. Centers for Disease Control and Prevention. Accessed September 2015. http:\/\/www.cdc.gov\/drugresistance\/pdf\/ar-threats-2013-508.pdf"},{"key":"10.3168\/jds.2016-11076_bib0045","doi-asserted-by":"crossref","first-page":"58","DOI":"10.1111\/1758-2229.12019","article-title":"The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups","volume":"5","author":"Clermont","year":"2013","journal-title":"Environ. Microbiol. Rep."},{"key":"10.3168\/jds.2016-11076_bib0050","series-title":"CLSI document M02\u2013A10.","article-title":"Performance Standards for Antimicrobial Disk Susceptibility Tests; Approved Standard-Tenth Edition","year":"2009"},{"key":"10.3168\/jds.2016-11076_bib0055","doi-asserted-by":"crossref","first-page":"31","DOI":"10.1016\/j.diagmicrobio.2012.01.004","article-title":"First countrywide survey of third-generation cephalosporin-resistant Escherichia coli from broilers, swine, and cattle in Switzerland","volume":"73","author":"Endimiani","year":"2012","journal-title":"Diagn. Microbiol. Infect. Dis."},{"key":"10.3168\/jds.2016-11076_bib0060","doi-asserted-by":"crossref","first-page":"646","DOI":"10.1111\/j.1469-0691.2012.03850.x","article-title":"Extended-spectrum beta-lactamase-producing and AmpC-producing Escherichia coli from livestock and companion animals, and their putative impact on public health: A global perspective","volume":"18","author":"Ewers","year":"2012","journal-title":"Clin. Microbiol. Infect."},{"key":"10.3168\/jds.2016-11076_bib0065","doi-asserted-by":"crossref","first-page":"279","DOI":"10.1007\/s10482-011-9585-y","article-title":"Analysis of the DNA region mediating increased thermotolerance at 58 degrees C in Cronobacter sp. and other enterobacterial strains","volume":"100","author":"Gajdosova","year":"2011","journal-title":"Antonie van Leeuwenhoek"},{"key":"10.3168\/jds.2016-11076_bib0070","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1186\/1746-6148-8-21","article-title":"Occurrence and characteristics of extended-spectrum beta-lactamase (ESBL) producing Enterobacteriaceae in food producing animals, minced meat and raw milk","volume":"8","author":"Geser","year":"2012","journal-title":"BMC Vet. Res."},{"key":"10.3168\/jds.2016-11076_bib0075","doi-asserted-by":"crossref","first-page":"595","DOI":"10.1186\/1471-2105-11-595","article-title":"BIGSdb: Scalable analysis of bacterial genome variation at the population level","volume":"11","author":"Jolley","year":"2010","journal-title":"BMC Bioinformatics"},{"key":"10.3168\/jds.2016-11076_bib0080","doi-asserted-by":"crossref","first-page":"80","DOI":"10.3389\/fmicb.2013.00080","article-title":"Commensal Enterobacteriaceae as reservoirs of extended-spectrum beta-lactamases, integrons, and sul genes in Portugal","volume":"4","author":"Machado","year":"2013","journal-title":"Front. Microbiol."},{"key":"10.3168\/jds.2016-11076_bib0085","doi-asserted-by":"crossref","first-page":"932","DOI":"10.3389\/fmicb.2015.00932","article-title":"Genetic determinants of heat resistance in Escherichia coli.","volume":"6","author":"Mercer","year":"2015","journal-title":"Front. Microbiol."},{"key":"10.3168\/jds.2016-11076_bib0090","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1016\/j.plasmid.2014.07.002","article-title":"Mechanisms of plasmid segregation: Have multicopy plasmids been overlooked?","volume":"75","author":"Million-Weaver","year":"2014","journal-title":"Plasmid"},{"key":"10.3168\/jds.2016-11076_bib0095","doi-asserted-by":"crossref","first-page":"e996","DOI":"10.7717\/peerj.996","article-title":"NxRepair: Error correction in de novo sequence assembly using Nextera mate pairs","volume":"3","author":"Murphy","year":"2015","journal-title":"PeerJ"},{"key":"10.3168\/jds.2016-11076_bib0100","doi-asserted-by":"crossref","first-page":"714","DOI":"10.1089\/cmb.2013.0084","article-title":"Assembling single-cell genomes and mini-metagenomes from chimeric MDA products","volume":"20","author":"Nurk","year":"2013","journal-title":"J. Comput. Biol."},{"key":"10.3168\/jds.2016-11076_bib0105","doi-asserted-by":"crossref","first-page":"2035","DOI":"10.1093\/bioinformatics\/btv057","article-title":"NxTrim: optimized trimming of Illumina mate pair reads","volume":"31","author":"O'Connell","year":"2015","journal-title":"Bioinformatics"},{"key":"10.3168\/jds.2016-11076_bib0110","doi-asserted-by":"crossref","first-page":"D206","DOI":"10.1093\/nar\/gkt1226","article-title":"The SEED and the rapid annotation of microbial genomes using subsystems technology (RAST)","volume":"42","author":"Overbeek","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"10.3168\/jds.2016-11076_bib0115","doi-asserted-by":"crossref","first-page":"D737","DOI":"10.1093\/nar\/gkt1252","article-title":"BacMet: Antibacterial biocide and metal resistance genes database","volume":"42","author":"Pal","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"10.3168\/jds.2016-11076_bib0120","doi-asserted-by":"crossref","first-page":"815","DOI":"10.3168\/jds.2012-5865","article-title":"Fate of Shiga toxin-producing and generic Escherichia coli during production and ripening of semihard raw milk cheese","volume":"96","author":"Peng","year":"2013","journal-title":"J. Dairy Sci."},{"key":"10.3168\/jds.2016-11076_bib0125","doi-asserted-by":"crossref","first-page":"3543","DOI":"10.3168\/jds.2012-6174","article-title":"Short communication: Heat resistance of Escherichia coli strains in raw milk at different subpasteurization conditions","volume":"96","author":"Peng","year":"2013","journal-title":"J. Dairy Sci."},{"key":"10.3168\/jds.2016-11076_bib0130","doi-asserted-by":"crossref","first-page":"136","DOI":"10.31083\/0003-925X-63-136","article-title":"In vitro characterization of Shiga toxin-producing and generic Escherichia coli in respect of cheese production-relevant stresses","volume":"63","author":"Peng","year":"2012","journal-title":"J. Food Saf. Food Qual."},{"key":"10.3168\/jds.2016-11076_bib0135","doi-asserted-by":"crossref","first-page":"415","DOI":"10.1128\/AEM.02941-14","article-title":"Improving detection of Shiga toxin-producing Escherichia coli by molecular methods by reducing the interference of free Shiga toxin-encoding bacteriophages","volume":"81","author":"Quir\u00f3s","year":"2015","journal-title":"Appl. Environ. Microbiol."},{"key":"10.3168\/jds.2016-11076_bib0140","unstructured":"RAST. 2015. Rapid Annotation using Subsystem Technology. Accessed December 2015. http:\/\/rast.nmpdr.org"},{"key":"10.3168\/jds.2016-11076_bib0145","doi-asserted-by":"crossref","first-page":"944","DOI":"10.1093\/bioinformatics\/16.10.944","article-title":"Artemis: sequence visualization and annotation","volume":"16","author":"Rutherford","year":"2000","journal-title":"Bioinformatics"},{"key":"10.3168\/jds.2016-11076_bib0150","doi-asserted-by":"crossref","first-page":"22","DOI":"10.1016\/j.drup.2012.12.001","article-title":"Extended-spectrum cephalosporin-resistant gram-negative organisms in livestock: An emerging problem for human health?","volume":"16","author":"Seiffert","year":"2013","journal-title":"Drug Resist. Updat."},{"key":"10.3168\/jds.2016-11076_bib0155","unstructured":"Sequin. 2016. Sequin\u2014A DNA Sequence Submission and Update Tool. National Center for Biotechnology Information, National Library of Medicine, National Institute of Health, Bethesda, MD. Accessed February 2016. http:\/\/www.ncbi.nlm.nih.gov\/Sequin"},{"key":"10.3168\/jds.2016-11076_bib0160","doi-asserted-by":"crossref","first-page":"31","DOI":"10.1186\/1471-2199-7-31","article-title":"Use of the lambda Red recombinase system to produce recombinant prophages carrying antibiotic resistance genes","volume":"7","author":"Serra-Moreno","year":"2006","journal-title":"BMC Mol. Biol."},{"key":"10.3168\/jds.2016-11076_bib0165","doi-asserted-by":"crossref","first-page":"6645","DOI":"10.1128\/JB.00466-07","article-title":"Insertion site occupancy by stx2 bacteriophages depends on the locus availability of the host strain chromosome","volume":"189","author":"Serra-Moreno","year":"2007","journal-title":"J. Bacteriol."},{"key":"10.3168\/jds.2016-11076_bib0170","doi-asserted-by":"crossref","first-page":"925","DOI":"10.1089\/fpd.2009.0278","article-title":"Assessment of antimicrobial resistance transfer between lactic acid bacteria and potential foodborne pathogens using in vitro methods and mating in a food matrix","volume":"6","author":"Toomey","year":"2009","journal-title":"Foodborne Pathog. Dis."},{"key":"10.3168\/jds.2016-11076_bib0175","unstructured":"University of Warwick. 2016. MLST Databases at UoW. Warwick Medical School, The University of Warwick, Coventry, UK. Accessed February 2016. http:\/\/mlst.warwick.ac.uk\/mlst\/"},{"key":"10.3168\/jds.2016-11076_bib0180","doi-asserted-by":"crossref","first-page":"485","DOI":"10.1089\/mdr.2013.0210","article-title":"Occurrence and genetic characteristics of third-generation cephalosporin-resistant Escherichia coli in Swiss retail meat","volume":"20","author":"Vogt","year":"2014","journal-title":"Microb. Drug Resist."},{"key":"10.3168\/jds.2016-11076_bib0185","doi-asserted-by":"crossref","first-page":"240","DOI":"10.1111\/2049-632X.12145","article-title":"Toxin-antitoxin systems: Their role in persistence, biofilm formation, and pathogenicity","volume":"70","author":"Wen","year":"2014","journal-title":"Pathog. Dis."},{"key":"10.3168\/jds.2016-11076_bib0190","doi-asserted-by":"crossref","first-page":"1136","DOI":"10.1111\/j.1365-2958.2006.05172.x","article-title":"Sex and virulence in Escherichia coli: An evolutionary perspective","volume":"60","author":"Wirth","year":"2006","journal-title":"Mol. Microbiol."},{"key":"10.3168\/jds.2016-11076_bib0195","doi-asserted-by":"crossref","first-page":"494","DOI":"10.1128\/AAC.38.3.494","article-title":"Effect of hyperproduction of TEM-1 beta-lactamase on in vitro susceptibility of Escherichia coli to beta-lactam antibiotics","volume":"38","author":"Wu","year":"1994","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.3168\/jds.2016-11076_bib0200","doi-asserted-by":"crossref","first-page":"118","DOI":"10.1016\/j.plasmid.2015.04.007","article-title":"Different IncI1 plasmids from Escherichia coli carry ISEcp1-blaCTX-M-15 associated with different Tn2-derived elements","volume":"80","author":"Zong","year":"2015","journal-title":"Plasmid"}],"container-title":["Journal of Dairy Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0022030216305653?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0022030216305653?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0022030216305653","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,10]],"date-time":"2025-06-10T15:19:30Z","timestamp":1749568770000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0022030216305653"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,11]]},"references-count":40,"journal-issue":{"issue":"11","published-print":{"date-parts":[[2016,11]]}},"alternative-id":["S0022030216305653"],"URL":"https:\/\/doi.org\/10.3168\/jds.2016-11076","relation":{},"ISSN":["0022-0302"],"issn-type":[{"value":"0022-0302","type":"print"}],"subject":[],"published":{"date-parts":[[2016,11]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Short communication: Heat-resistant Escherichia coli as potential persistent reservoir of extended-spectrum \u03b2-lactamases and Shiga toxin-encoding phages in dairy","name":"articletitle","label":"Article Title"},{"value":"Journal of Dairy Science","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.3168\/jds.2016-11076","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2016 American Dairy Science Association\u00ae.","name":"copyright","label":"Copyright"}]}}