{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,3]],"date-time":"2025-11-03T19:53:41Z","timestamp":1762199621984,"version":"build-2065373602"},"reference-count":79,"publisher":"American Dairy Science Association","issue":"12","license":[{"start":{"date-parts":[[2023,12,1]],"date-time":"2023-12-01T00:00:00Z","timestamp":1701388800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2023,12,1]],"date-time":"2023-12-01T00:00:00Z","timestamp":1701388800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2023,8,17]],"date-time":"2023-08-17T00:00:00Z","timestamp":1692230400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100005825","name":"National Institute of Food and Agriculture","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100005825","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["journalofdairyscience.org","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Dairy Science"],"published-print":{"date-parts":[[2023,12]]},"DOI":"10.3168\/jds.2023-23398","type":"journal-article","created":{"date-parts":[[2023,8,23]],"date-time":"2023-08-23T19:43:11Z","timestamp":1692819791000},"page":"9745-9762","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":4,"title":["Transcriptome changes associated with elongation of bovine conceptuses I: Differentially expressed transcripts in the conceptus on day 17 after insemination"],"prefix":"10.3168","volume":"106","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-3896-8626","authenticated-orcid":false,"given":"P.M.","family":"Peixoto","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5438-2137","authenticated-orcid":false,"given":"J.J.","family":"Bromfield","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4201-7383","authenticated-orcid":false,"given":"E.S.","family":"Ribeiro","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3403-1465","authenticated-orcid":false,"given":"J.E.P.","family":"Santos","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6866-3431","authenticated-orcid":false,"given":"W.W.","family":"Thatcher","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6144-2919","authenticated-orcid":false,"given":"R.S.","family":"Bisinotto","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"1747","reference":[{"key":"10.3168\/jds.2023-23398_bib1","doi-asserted-by":"crossref","first-page":"557","DOI":"10.1038\/nm.3159","article-title":"PPAR\u03b3 signaling and metabolism: The good, the bad, and the future","volume":"19","author":"Ahmadian","year":"2013","journal-title":"Nat. Med."},{"key":"10.3168\/jds.2023-23398_bib2","doi-asserted-by":"crossref","first-page":"424","DOI":"10.1002\/mrd.22640","article-title":"Differences in mRNA populations of short and long bovine conceptuses on day 15 of gestation","volume":"83","author":"Barnwell","year":"2016","journal-title":"Mol. Reprod. Dev."},{"key":"10.3168\/jds.2023-23398_bib3","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","article-title":"Controlling the false discovery rate: A practical and powerful approach to multiple testing","volume":"57","author":"Benjamini","year":"1995","journal-title":"J. R. Stat. Soc. B"},{"key":"10.3168\/jds.2023-23398_bib4","doi-asserted-by":"crossref","first-page":"155","DOI":"10.1016\/0093-691X(88)90038-6","article-title":"The anatomy and physiology of pre-attachment bovine embryos","volume":"29","author":"Betteridge","year":"1988","journal-title":"Theriogenology"},{"key":"10.3168\/jds.2023-23398_bib5","doi-asserted-by":"crossref","first-page":"14492","DOI":"10.1073\/pnas.1520945114","article-title":"Massive dysregulation of genes involved in cell signaling and placental development in cloned cattle conceptus and maternal endometrium","volume":"113","author":"Biase","year":"2016","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.3168\/jds.2023-23398_bib6","doi-asserted-by":"crossref","first-page":"889","DOI":"10.3168\/jds.2021-20193","article-title":"Effects of progesterone concentrations and follicular wave during growth of the ovulatory follicle on conceptus and endometrial transcriptome in dairy cows","volume":"105","author":"Bisinotto","year":"2022","journal-title":"J. Dairy Sci."},{"key":"10.3168\/jds.2023-23398_bib7","doi-asserted-by":"crossref","first-page":"188","DOI":"10.1152\/physiolgenomics.00157.2004","article-title":"Serial analysis of gene expression during elongation of the peri-implantation porcine trophectoderm (conceptus)","volume":"20","author":"Blomberg","year":"2005","journal-title":"Physiol. Genomics"},{"key":"10.3168\/jds.2023-23398_bib8","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1038\/nature20578","article-title":"Inhibition of mTor induces a paused pluripotent state","volume":"540","author":"Bulut-Karslioglu","year":"2016","journal-title":"Nature"},{"key":"10.3168\/jds.2023-23398_bib9","doi-asserted-by":"crossref","first-page":"125","DOI":"10.3892\/mmr.2020.11764","article-title":"BMP2 induces hMSC osteogenesis and matrix remodeling","volume":"23","author":"Cai","year":"2021","journal-title":"Mol. Med. Rep."},{"key":"10.3168\/jds.2023-23398_bib10","doi-asserted-by":"crossref","first-page":"1703","DOI":"10.1095\/biolreprod.102.012708","article-title":"Pregnancy and interferon tau regulate major histocompatibility complex class I and \u03b22-microglobulin expression in the ovine uterus","volume":"68","author":"Choi","year":"2003","journal-title":"Biol. Reprod."},{"key":"10.3168\/jds.2023-23398_bib11","article-title":"Immunohistochemistry detected and localized cannabinoid receptor type 2 in bovine fetal pancreas at late gestation","volume":"61","author":"Dall\u2019Aglio","year":"2017","journal-title":"Eur. J. Histochem."},{"key":"10.3168\/jds.2023-23398_bib12","doi-asserted-by":"crossref","first-page":"194","DOI":"10.1053\/plac.1999.0475","article-title":"Temporal and regional regulation of major histocompatibility complex class I expression at the bovine uterine\/placental interface","volume":"21","author":"Davies","year":"2000","journal-title":"Placenta"},{"key":"10.3168\/jds.2023-23398_bib13","doi-asserted-by":"crossref","first-page":"48","DOI":"10.1016\/j.jri.2009.06.125","article-title":"Classical and non-classical major histocompatibility complex class I gene expression in vitro derived bovine embryos","volume":"82","author":"Doyle","year":"2009","journal-title":"J. Reprod. Immunol."},{"key":"10.3168\/jds.2023-23398_bib14","doi-asserted-by":"crossref","first-page":"W71","DOI":"10.1093\/nar\/gkt293","article-title":"User-friendly solutions for microarray quality control and pre-processing on arrayanalysis.org","volume":"41","author":"Eijssen","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"10.3168\/jds.2023-23398_bib15","doi-asserted-by":"crossref","first-page":"431","DOI":"10.1006\/bbrc.1996.1044","article-title":"Molecular cloning, expression, and characterization of human peroxisome proliferator activated receptors gamma 1 and gamma 2","volume":"224","author":"Elbrecht","year":"1996","journal-title":"Biochem. Biophys. Res. Commun."},{"key":"10.3168\/jds.2023-23398_bib16","doi-asserted-by":"crossref","first-page":"107","DOI":"10.1387\/ijdb.130344ts","article-title":"Uterine glands: Biological roles in conceptus implantation, uterine receptivity, and decidualization","volume":"58","author":"Filant","year":"2014","journal-title":"Int. J. Dev. Biol."},{"key":"10.3168\/jds.2023-23398_bib17","doi-asserted-by":"crossref","first-page":"266","DOI":"10.1095\/biolreprod.110.085910","article-title":"Changes in the endometrial transcriptome during the bovine estrous cycle: Effect of low circulating progesterone and consequences for conceptus elongation","volume":"84","author":"Forde","year":"2011","journal-title":"Biol. Reprod."},{"key":"10.3168\/jds.2023-23398_bib18","doi-asserted-by":"crossref","first-page":"92","DOI":"10.1095\/biolreprod.116.139857","article-title":"Sexually dimorphic gene expression in bovine conceptuses at the initiation of implantation","volume":"95","author":"Forde","year":"2016","journal-title":"Biol. Reprod."},{"key":"10.3168\/jds.2023-23398_bib19","doi-asserted-by":"crossref","first-page":"94","DOI":"10.1095\/biolreprod.108.071654","article-title":"Select nutrients in the ovine uterine lumen. II. glucose transporters in the uterus and peri-implantation conceptuses","volume":"80","author":"Gao","year":"2009","journal-title":"Biol. Reprod."},{"key":"10.3168\/jds.2023-23398_bib20","doi-asserted-by":"crossref","first-page":"602","DOI":"10.1095\/biolreprod.108.073890","article-title":"Select nutrients in the ovine uterine lumen. III. Cationic amino acid transporters in the ovine uterus and peri-implantation conceptuses","volume":"80","author":"Gao","year":"2009","journal-title":"Biol. Reprod."},{"key":"10.3168\/jds.2023-23398_bib21","doi-asserted-by":"crossref","first-page":"1196","DOI":"10.1095\/biolreprod.108.075440","article-title":"Select nutrients in the ovine uterine lumen. IV. Expression of neutral and acidic amino acid transporters in ovine uteri and peri-implantation conceptuses","volume":"80","author":"Gao","year":"2009","journal-title":"Biol. Reprod."},{"key":"10.3168\/jds.2023-23398_bib22","doi-asserted-by":"crossref","first-page":"67","DOI":"10.1095\/biolreprod.108.075473","article-title":"Select nutrients in the ovine uterine lumen. V. Nitric oxide synthase, GTP cyclohydrolase, and ornithine decarboxylase in ovine uteri and peri-implantation conceptuses","volume":"81","author":"Gao","year":"2009","journal-title":"Biol. Reprod."},{"key":"10.3168\/jds.2023-23398_bib23","doi-asserted-by":"crossref","first-page":"449","DOI":"10.1093\/bib\/bbr042","article-title":"Phylogenetic-based propagation of functional annotations within the gene ontology consortium","volume":"12","author":"Gaudet","year":"2011","journal-title":"Brief. Bioinform."},{"key":"10.3168\/jds.2023-23398_bib24","doi-asserted-by":"crossref","first-page":"268","DOI":"10.1016\/j.placenta.2004.05.013","article-title":"P-glycoprotein expression of the human placenta during pregnancy","volume":"26","author":"Gil","year":"2005","journal-title":"Placenta"},{"key":"10.3168\/jds.2023-23398_bib25","doi-asserted-by":"crossref","first-page":"223","DOI":"10.1530\/jrf.0.0870223","article-title":"Temporal associations among ovarian events in cattle during oestrous cycles with two and three follicular waves","volume":"87","author":"Ginther","year":"1989","journal-title":"Reproduction"},{"key":"10.3168\/jds.2023-23398_bib26","doi-asserted-by":"crossref","first-page":"685","DOI":"10.1530\/REP-10-0533","article-title":"Increase of essential amino acids in the bovine uterine lumen during preimplantation development","volume":"141","author":"Groebner","year":"2011","journal-title":"Reproduction"},{"key":"10.3168\/jds.2023-23398_bib27","doi-asserted-by":"crossref","first-page":"3496","DOI":"10.1210\/en.2007-0283","article-title":"WNTs in the ovine uterus: Potential regulation of peri-implantation ovine conceptus development","volume":"148","author":"Hayashi","year":"2007","journal-title":"Endocrinology"},{"key":"10.3168\/jds.2023-23398_bib28","doi-asserted-by":"crossref","first-page":"308","DOI":"10.1095\/biolreprod.110.088161","article-title":"WNTs in the neonatal mouse uterus: Potential regulation of endometrial gland development","volume":"84","author":"Hayashi","year":"2011","journal-title":"Biol. Reprod."},{"key":"10.3168\/jds.2023-23398_bib29","doi-asserted-by":"crossref","first-page":"3068","DOI":"10.3892\/or.2015.4272","article-title":"Tetraspanin 1 is involved in survival, proliferation, and carcinogenesis of pancreatic cancer","volume":"34","author":"Hou","year":"2015","journal-title":"Oncol. Rep."},{"key":"10.3168\/jds.2023-23398_bib30","doi-asserted-by":"crossref","first-page":"F89","DOI":"10.1083\/jcb.150.2.F89","article-title":"The evolution of cell adhesion","volume":"150","author":"Hynes","year":"2000","journal-title":"J. Cell Biol."},{"key":"10.3168\/jds.2023-23398_bib31","doi-asserted-by":"crossref","first-page":"118","DOI":"10.1093\/biostatistics\/kxj037","article-title":"Adjusting batch effects in microarray expression data using empirical Bayes methods","volume":"8","author":"Johnson","year":"2007","journal-title":"Biostatistics"},{"key":"10.3168\/jds.2023-23398_bib32","doi-asserted-by":"crossref","first-page":"591","DOI":"10.1095\/biolreprod.105.042242","article-title":"Multidrug resistance phosphoglycoprotein (ABCB1) in the mouse placenta: Fetal protection. 2005","volume":"73","author":"Kalabis","year":"2005","journal-title":"Biol. Reprod."},{"key":"10.3168\/jds.2023-23398_bib33","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1016\/j.theriogenology.2020.09.001","article-title":"IFNT, ISGs, PPARs, RXRs, and MUC1 in day 16 embryo and endometrium of repeat-breeder cows, with or without subclinical endometritis","volume":"158","author":"Kasimanickam","year":"2020","journal-title":"Theriogenology"},{"key":"10.3168\/jds.2023-23398_bib34","doi-asserted-by":"crossref","first-page":"369","DOI":"10.1016\/j.matbio.2010.04.001","article-title":"Secreted phosphoprotein 1 binds integrins to initiate multiple cell signaling pathways, including FRAP1\/mTOR, to support attachment and force-generated migration of trophectoderm cells","volume":"29","author":"Kim","year":"2010","journal-title":"Matrix Biol."},{"key":"10.3168\/jds.2023-23398_bib35","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1038\/s41556-018-0205-1","article-title":"mTOR as a central hub of nutrient signaling and cell growth","volume":"21","author":"Kim","year":"2019","journal-title":"Nat. Cell Biol."},{"key":"10.3168\/jds.2023-23398_bib36","doi-asserted-by":"crossref","first-page":"270","DOI":"10.1016\/j.celrep.2015.03.015","article-title":"Transcriptional co-repressor function of the hippo pathway transducers YAP and TAZ","volume":"11","author":"Kim","year":"2015","journal-title":"Cell Rep."},{"key":"10.3168\/jds.2023-23398_bib37","doi-asserted-by":"crossref","first-page":"523","DOI":"10.1093\/bioinformatics\/btt703","article-title":"Causal analysis approaches in ingenuity pathway analysis","volume":"30","author":"Kr\u00e4mer","year":"2014","journal-title":"Bioinformatics"},{"key":"10.3168\/jds.2023-23398_bib38","doi-asserted-by":"crossref","first-page":"386","DOI":"10.1262\/jrd.2021-087","article-title":"Steroidal but not embryonic regulation of mucin 1 expression in bovine endometrium","volume":"67","author":"Kubota","year":"2021","journal-title":"J. Reprod. Dev."},{"key":"10.3168\/jds.2023-23398_bib39","doi-asserted-by":"crossref","first-page":"1828","DOI":"10.1126\/science.7892608","article-title":"Role of steroidogenic acute regulatory protein in adrenal and gonadal steroidogenesis","volume":"267","author":"Lin","year":"1995","journal-title":"Science"},{"key":"10.3168\/jds.2023-23398_bib40","doi-asserted-by":"crossref","first-page":"73","DOI":"10.1016\/0739-7240(94)00010-X","article-title":"Effects of somatotropin on the conceptus, uterus, and ovary during maternal recognition of pregnancy in cattle","volume":"12","author":"Lucy","year":"1995","journal-title":"Domest. Anim. Endocrinol."},{"key":"10.3168\/jds.2023-23398_bib41","doi-asserted-by":"crossref","first-page":"30","DOI":"10.1002\/mrd.10262","article-title":"Family of Kunitz proteins from trophoblast: Expression of the trophoblast Kunitz domain proteins (TKDP) in cattle and sheep","volume":"65","author":"MacLean","year":"2003","journal-title":"Mol. Reprod. Dev."},{"key":"10.3168\/jds.2023-23398_bib42","doi-asserted-by":"crossref","first-page":"2437","DOI":"10.1089\/scd.2015.0053","article-title":"WNT\/\u03b2-catenin signaling affects cell lineage and pluripotency-specific gene expression in bovine blastocysts: Prospects for bovine embryonic stem cell derivation","volume":"24","author":"Madeja","year":"2015","journal-title":"Stem Cells Dev."},{"key":"10.3168\/jds.2023-23398_bib43","doi-asserted-by":"crossref","first-page":"1143","DOI":"10.1095\/biolreprod.111.092643","article-title":"RNA sequencing reveals novel gene clusters in bovine conceptuses associated with maternal recognition of pregnancy and implantation","volume":"85","author":"Mamo","year":"2011","journal-title":"Biol. Reprod."},{"key":"10.3168\/jds.2023-23398_bib44","doi-asserted-by":"crossref","first-page":"22","DOI":"10.1016\/j.domaniend.2013.12.003","article-title":"Validation of an interferon stimulatory response element reporter gene assay for quantifying type I interferons","volume":"47","author":"McCoski","year":"2014","journal-title":"Domest. Anim. Endocrinol."},{"key":"10.3168\/jds.2023-23398_bib45","doi-asserted-by":"crossref","first-page":"E1749","DOI":"10.1073\/pnas.1721191115","article-title":"Uterine influences on conceptus development in fertility-classified animals","volume":"115","author":"Moraes","year":"2018","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.3168\/jds.2023-23398_bib46","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1016\/j.reprotox.2012.11.002","article-title":"Improvement of the cellular quality of cryopreserved bovine blastocysts accompanied by enhancement of the ATP-binding cassette sub-family B member 1 expression","volume":"35","author":"Mori","year":"2013","journal-title":"Reprod. Toxicol."},{"key":"10.3168\/jds.2023-23398_bib47","doi-asserted-by":"crossref","first-page":"683","DOI":"10.1016\/j.theriogenology.2013.11.015","article-title":"Effect of ATP-binding cassette subfamily B member 1 on bovine blastocyst implantation","volume":"81","author":"Mori","year":"2014","journal-title":"Theriogenology"},{"key":"10.3168\/jds.2023-23398_bib48","doi-asserted-by":"crossref","first-page":"319","DOI":"10.1038\/nature13535","article-title":"The cancer glycocalyx mechanically primes integrin-mediated growth and survival","volume":"511","author":"Paszek","year":"2014","journal-title":"Nature"},{"author":"Peixoto","key":"10.3168\/jds.2023-23398_bib49"},{"key":"10.3168\/jds.2023-23398_bib50","doi-asserted-by":"crossref","first-page":"9763","DOI":"10.3168\/jds.2023-23399","article-title":"Transcriptome changes associated with elongation of bovine conceptuses II: Differentially expressed transcripts in the endometrium on day 17 after insemination","volume":"106","author":"Peixoto","year":"2023","journal-title":"J. Dairy Sci."},{"author":"Qiagen","key":"10.3168\/jds.2023-23398_bib51"},{"key":"10.3168\/jds.2023-23398_bib52","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1095\/biolreprod.115.134908","article-title":"Biology of preimplantation conceptus at the onset of elongation in dairy cows","volume":"94","author":"Ribeiro","year":"2016","journal-title":"Biol. Reprod."},{"key":"10.3168\/jds.2023-23398_bib53","doi-asserted-by":"crossref","first-page":"4761","DOI":"10.3168\/jds.2015-10315","article-title":"Conceptus development and transcriptome at preimplantation stages in lactating dairy cows of distinct genetic groups and estrous cyclic statuses","volume":"99","author":"Ribeiro","year":"2016","journal-title":"J. Dairy Sci."},{"key":"10.3168\/jds.2023-23398_bib54","doi-asserted-by":"crossref","first-page":"470","DOI":"10.1002\/mrd.20431","article-title":"In vivo expression of interferon tau mRNA by the embryonic trophoblast and uterine concentrations of interferon tau protein during early pregnancy in the cow","volume":"73","author":"Robinson","year":"2006","journal-title":"Mol. Reprod. Dev."},{"key":"10.3168\/jds.2023-23398_bib55","doi-asserted-by":"crossref","first-page":"541","DOI":"10.1016\/j.ygeno.2003.09.017","article-title":"Confirming microarray data\u2014Is it really necessary?","volume":"83","author":"Rockett","year":"2004","journal-title":"Genomics"},{"key":"10.3168\/jds.2023-23398_bib56","doi-asserted-by":"crossref","first-page":"50","DOI":"10.1016\/j.molcel.2011.03.017","article-title":"Rac1 regulates the activity of mTORC1 and mTORC2 and controls cellular size","volume":"42","author":"Saci","year":"2011","journal-title":"Mol. Cell"},{"key":"10.3168\/jds.2023-23398_bib57","doi-asserted-by":"crossref","first-page":"26","DOI":"10.1093\/biolre\/ioz060","article-title":"Bovine endometrium responds differentially to age-matched short and long conceptuses","volume":"101","author":"S\u00e1nchez","year":"2019","journal-title":"Biol. Reprod."},{"key":"10.3168\/jds.2023-23398_bib58","doi-asserted-by":"crossref","first-page":"694","DOI":"10.1002\/mrd.23534","article-title":"Atlas of receptor genes expressed by the bovine morula and corresponding ligand-related genes expressed by uterine endometrium","volume":"88","author":"Sang","year":"2021","journal-title":"Mol. Reprod. Dev."},{"key":"10.3168\/jds.2023-23398_bib59","doi-asserted-by":"crossref","first-page":"513","DOI":"10.1016\/j.anireprosci.2004.04.015","article-title":"The effect of embryonic death rates in cattle on the efficacy of estrus synchronization programs","volume":"82\u201383","author":"Santos","year":"2004","journal-title":"Anim. Reprod. Sci."},{"key":"10.3168\/jds.2023-23398_bib60","doi-asserted-by":"crossref","first-page":"530","DOI":"10.1128\/MCB.20.2.530-541.2000","article-title":"The HAND1 basic helix-loop-helix transcription factor regulates trophoblast differentiation via multiple mechanisms","volume":"20","author":"Scott","year":"2000","journal-title":"Mol. Cell. Biol."},{"key":"10.3168\/jds.2023-23398_bib61","doi-asserted-by":"crossref","first-page":"135","DOI":"10.1016\/j.bbrc.2005.04.098","article-title":"Transforming growth factor-\u03b22 enhances differentiation of cardiac myocytes from embryonic stem cells","volume":"332","author":"Singla","year":"2005","journal-title":"Biochem. Biophys. Res. Commun."},{"key":"10.3168\/jds.2023-23398_bib62","doi-asserted-by":"crossref","first-page":"3","DOI":"10.2202\/1544-6115.1027","article-title":"Linear models and empirical bayes methods for assessing differential expression in microarray experiments","volume":"3","author":"Smyth","year":"2004","journal-title":"Stat. Appl. Genet. Mol. Biol."},{"key":"10.3168\/jds.2023-23398_bib63","doi-asserted-by":"crossref","first-page":"839","DOI":"10.1016\/j.placenta.2010.07.011","article-title":"Wnt signalling in implantation, decidualization, and placental differentiation\u2014Review","volume":"31","author":"Sonderegger","year":"2010","journal-title":"Placenta"},{"key":"10.3168\/jds.2023-23398_bib64","doi-asserted-by":"crossref","first-page":"5941","DOI":"10.3168\/jds.2015-10070","article-title":"The role of progesterone and conceptus-derived factors in uterine biology during early pregnancy in ruminants","volume":"99","author":"Spencer","year":"2016","journal-title":"J. Dairy Sci."},{"key":"10.3168\/jds.2023-23398_bib65","doi-asserted-by":"crossref","first-page":"23956","DOI":"10.1074\/jbc.M800351200","article-title":"Smad7 stabilizes \u03b2-catenin binding to E-cadherin complex and promotes cell-cell adhesion","volume":"283","author":"Tang","year":"2008","journal-title":"J. Biol. Chem."},{"key":"10.3168\/jds.2023-23398_bib66","first-page":"91","article-title":"Antiluteolytic effects of bovine trophoblast protein-1","volume":"37","author":"Thatcher","year":"1989","journal-title":"J. Reprod. Fertil. Suppl."},{"key":"10.3168\/jds.2023-23398_bib67","doi-asserted-by":"crossref","first-page":"2548","DOI":"10.1128\/MCB.00992-06","article-title":"Calpain 6 is involved in microtubule stabilization and cytoskeletal organization","volume":"27","author":"Tonami","year":"2007","journal-title":"Mol. Cell. Biol."},{"key":"10.3168\/jds.2023-23398_bib68","doi-asserted-by":"crossref","first-page":"585","DOI":"10.1083\/jcb.153.3.585","article-title":"A new focal adhesion protein that interacts with integrin-linked kinase and regulates cell adhesion and spreading","volume":"153","author":"Tu","year":"2001","journal-title":"J. Cell Biol."},{"key":"10.3168\/jds.2023-23398_bib69","doi-asserted-by":"crossref","first-page":"2331","DOI":"10.1093\/humrep\/den258","article-title":"High levels of anandamide, an endogenous cannabinoid, block the growth of sheep preimplantation embryos by inducing apoptosis and reversible arrest of cell proliferation","volume":"23","author":"Turco","year":"2008","journal-title":"Hum. Reprod."},{"key":"10.3168\/jds.2023-23398_bib70","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0129787","article-title":"Morphological and gene expression changes in cattle embryos from hatched blastocyst to early gastrulation stages after transfer of in vitro produced embryos","volume":"10","author":"van Leeuwen","year":"2015","journal-title":"PLoS One"},{"key":"10.3168\/jds.2023-23398_bib71","doi-asserted-by":"crossref","first-page":"3239","DOI":"10.1074\/jbc.M802782200","article-title":"Disruption of the integrin \u03b1L\u03b22 transmembrane domain interface by \u03b22 Thr-686 mutation activates \u03b1L\u03b22 and promotes micro-clustering of the \u03b1L subunits","volume":"284","author":"Vararattanavech","year":"2009","journal-title":"J. Biol. Chem."},{"key":"10.3168\/jds.2023-23398_bib72","doi-asserted-by":"crossref","first-page":"543","DOI":"10.1038\/nri2103","article-title":"Intrinsic and cooperative antigen-presenting functions of dendritic-cell subsets in vivo","volume":"7","author":"Villadangos","year":"2007","journal-title":"Nat. Rev. Immunol."},{"key":"10.3168\/jds.2023-23398_bib73","doi-asserted-by":"crossref","first-page":"294","DOI":"10.1038\/nature20117","article-title":"Fatty acid synthesis configures the plasma membrane for inflammation in diabetes","volume":"539","author":"Wei","year":"2016","journal-title":"Nature"},{"key":"10.3168\/jds.2023-23398_bib74","doi-asserted-by":"crossref","first-page":"255","DOI":"10.1083\/jcb.129.1.255","article-title":"Episialin (MUC1) overexpression inhibits integrin-mediated cell adhesion to extracellular matrix components","volume":"129","author":"Wesseling","year":"1995","journal-title":"J. Cell Biol."},{"key":"10.3168\/jds.2023-23398_bib75","doi-asserted-by":"crossref","first-page":"239","DOI":"10.1016\/j.theriogenology.2016.04.037","article-title":"Pivotal periods for pregnancy loss during the first trimester of gestation in lactating dairy cows","volume":"86","author":"Wiltbank","year":"2016","journal-title":"Theriogenology"},{"key":"10.3168\/jds.2023-23398_bib76","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1016\/0143-4004(92)90025-O","article-title":"Current topic: The synepitheliochorial placenta of ruminants: Binucleate cell fusions and hormone production","volume":"13","author":"Wooding","year":"1992","journal-title":"Placenta"},{"key":"10.3168\/jds.2023-23398_bib77","doi-asserted-by":"crossref","first-page":"909","DOI":"10.1198\/016214504000000683","article-title":"A model-based background adjustment for oligonucleotide expression arrays","volume":"99","author":"Wu","year":"2004","journal-title":"J. Am. Stat. Assoc."},{"key":"10.3168\/jds.2023-23398_bib78","doi-asserted-by":"crossref","first-page":"15694","DOI":"10.1074\/jbc.M601252200","article-title":"Receptor specificity of the fibroblast growth factor family: The complete mammalian FGF family. The complete mammalian FGF family","volume":"281","author":"Zhang","year":"2006","journal-title":"J. Biol. Chem."},{"key":"10.3168\/jds.2023-23398_bib79","doi-asserted-by":"crossref","first-page":"2667","DOI":"10.1002\/stem.1371","article-title":"Gene regulatory networks mediating canonical Wnt signal-directed control of pluripotency and differentiation in embryo stem cells","volume":"31","author":"Zhang","year":"2013","journal-title":"Stem Cells"}],"container-title":["Journal of Dairy Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0022030223005180?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0022030223005180?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0022030223005180","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,11,3]],"date-time":"2025-11-03T19:31:53Z","timestamp":1762198313000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0022030223005180"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,12]]},"references-count":79,"journal-issue":{"issue":"12","published-print":{"date-parts":[[2023,12]]}},"alternative-id":["S0022030223005180"],"URL":"https:\/\/doi.org\/10.3168\/jds.2023-23398","relation":{},"ISSN":["0022-0302"],"issn-type":[{"type":"print","value":"0022-0302"}],"subject":[],"published":{"date-parts":[[2023,12]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Transcriptome changes associated with elongation of bovine conceptuses I: Differentially expressed transcripts in the conceptus on day 17 after insemination","name":"articletitle","label":"Article Title"},{"value":"Journal of Dairy Science","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.3168\/jds.2023-23398","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2023","name":"copyright","label":"Copyright"}]}}