{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,22]],"date-time":"2026-01-22T19:07:40Z","timestamp":1769108860365,"version":"3.49.0"},"reference-count":33,"publisher":"Centers for Disease Control and Prevention (CDC)","issue":"9","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Emerg. Infect. Dis."],"published-print":{"date-parts":[[2013,9]]},"DOI":"10.3201\/eid1909.130377","type":"journal-article","created":{"date-parts":[[2013,8,15]],"date-time":"2013-08-15T13:13:03Z","timestamp":1376572383000},"page":"1418-1427","source":"Crossref","is-referenced-by-count":34,"title":["Continued Evolution of West Nile Virus, Houston, Texas, USA, 2002\u20132012"],"prefix":"10.3201","volume":"19","author":[{"given":"Brian R.","family":"Mann","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Allison R.","family":"McMullen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Daniele M.","family":"Swetnam","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Vence","family":"Salvato","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Martin","family":"Reyna","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hilda","family":"Guzman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"suffix":"Jr.","given":"Rudy","family":"Bueno","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"James A.","family":"Dennett","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Robert B.","family":"Tesh","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alan D.T.","family":"Barrett","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"1822","reference":[{"key":"key-10.3201\/eid1909.130377-201308191028-R1","doi-asserted-by":"publisher","first-page":"286","DOI":"10.1002\/ana.20959","article-title":"West Nile virus neuroinvasive disease.","volume":"60","author":"Davis","year":"2006","journal-title":"Ann Neurol"},{"key":"key-10.3201\/eid1909.130377-201308191028-R2","doi-asserted-by":"publisher","first-page":"71","DOI":"10.1017\/S1466252307001430","article-title":"Transmission dynamics and changing epidemiology of West Nile virus.","volume":"9","author":"Blitvich","year":"2008","journal-title":"Anim Health Res Rev"},{"key":"key-10.3201\/eid1909.130377-201308191028-R3","doi-asserted-by":"publisher","first-page":"181","DOI":"10.1146\/annurev.med.57.121304.131418","article-title":"West Nile virus: epidemiology and clinical features of an emerging epidemic in the United States.","volume":"57","author":"Hayes","year":"2006","journal-title":"Annu Rev Med"},{"key":"key-10.3201\/eid1909.130377-201308191028-R4","doi-asserted-by":"publisher","first-page":"2333","DOI":"10.1126\/science.286.5448.2333","article-title":"Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States.","volume":"286","author":"Lanciotti","year":"1999","journal-title":"Science"},{"key":"key-10.3201\/eid1909.130377-201308191028-R5","first-page":"1399","article-title":"West Nile virus infection in 2002: morbidity and mortality among patients admitted to hospital in southcentral Ontario.","volume":"168","author":"Pepperell","year":"2003","journal-title":"CMAJ"},{"key":"key-10.3201\/eid1909.130377-201308191028-R6","doi-asserted-by":"publisher","first-page":"314","DOI":"10.3201\/eid1202.050871","article-title":"Introduction of West Nile virus strains in Mexico.","volume":"12","author":"Deardorff","year":"2006","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid1909.130377-201308191028-R7","doi-asserted-by":"publisher","first-page":"1559","DOI":"10.3201\/eid1210.060852","article-title":"West Nile virus isolation from equines in Argentina, 2006.","volume":"12","author":"Morales","year":"2006","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid1909.130377-201308191028-R8","doi-asserted-by":"crossref","first-page":"676","DOI":"10.4269\/ajtmh.2004.70.676","article-title":"The 2002 introduction of West Nile virus into Harris County, Texas, an area historically endemic for St. Louis encephalitis.","volume":"70","author":"Lillibridge","year":"2004","journal-title":"Am J Trop Med Hyg"},{"key":"key-10.3201\/eid1909.130377-201308191028-R9","doi-asserted-by":"publisher","first-page":"143","DOI":"10.1016\/j.virol.2006.10.030","article-title":"Diversity and evolution of West Nile virus in Illinois and the United States, 2002\u20132005.","volume":"360","author":"Bertolotti","year":"2007","journal-title":"Virology"},{"key":"key-10.3201\/eid1909.130377-201308191028-R10","doi-asserted-by":"publisher","first-page":"381","DOI":"10.1016\/j.virol.2007.12.040","article-title":"Fine-scale genetic variation and evolution of West Nile virus in a transmission \u201chot spot\u201d in suburban Chicago, USA.","volume":"374","author":"Bertolotti","year":"2008","journal-title":"Virology"},{"key":"key-10.3201\/eid1909.130377-201308191028-R11","doi-asserted-by":"publisher","first-page":"203","DOI":"10.1016\/j.virol.2011.06.006","article-title":"Molecular evolution of West Nile virus in northern temperate region: Connecticut, USA 1999\u20132008.","volume":"417","author":"Armstrong","year":"2011","journal-title":"Virology"},{"key":"key-10.3201\/eid1909.130377-201308191028-R12","doi-asserted-by":"publisher","first-page":"252","DOI":"10.1016\/j.virol.2005.07.022","article-title":"Phylogenetic analysis of North American West Nile virus isolates, 2001\u20132004: evidence for the emergence of a dominant genotype.","volume":"342","author":"Davis","year":"2005","journal-title":"Virology"},{"key":"key-10.3201\/eid1909.130377-201308191028-R13","doi-asserted-by":"crossref","first-page":"650","DOI":"10.3201\/eid0704.017408","article-title":"Partial genetic characterization of West Nile virus strains, New York State, 2000.","volume":"7","author":"Ebel","year":"2001","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid1909.130377-201308191028-R14","doi-asserted-by":"publisher","first-page":"785","DOI":"10.3201\/eid1705.101707","article-title":"Evolution of new genotype of West Nile virus in North America.","volume":"17","author":"McMullen","year":"2011","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid1909.130377-201308191028-R15","unstructured":"Centers for Disease Control and Prevention (CDC). West Nile virus: statistics, surveillance, and control archive, 1999\u2013present [cited 2012 Jun 18]. http:\/\/www.cdc.gov\/ncidod\/dvbid\/westnile\/surv&control_archive.htm"},{"key":"key-10.3201\/eid1909.130377-201308191028-R16","doi-asserted-by":"publisher","first-page":"601","DOI":"10.3201\/eid1304.061473","article-title":"Genetic stasis of dominant West Nile virus genotype, Houston, Texas.","volume":"13","author":"Davis","year":"2007","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid1909.130377-201308191028-R17","doi-asserted-by":"publisher","first-page":"2531","DOI":"10.1128\/JVI.02169-06","article-title":"Declining growth rate of West Nile virus in North America.","volume":"81","author":"Snapinn","year":"2007","journal-title":"J Virol"},{"key":"key-10.3201\/eid1909.130377-201308191028-R18","doi-asserted-by":"crossref","unstructured":"Amore G, Bertolotti L, Hamer GL, Kitron UD, Walker ED, Ruiz MO, Mutli-year evolutionary dynamics of West Nile virus in suburban Chicago, USA, 2005\u20132007. Phil Trans R Soc B. 2010;365:1871\u20138.","DOI":"10.1098\/rstb.2010.0054"},{"key":"key-10.3201\/eid1909.130377-201308191028-R19","unstructured":"Texas Department of State Health Services (DSHS). West Nile virus in Texas 2012\u2013present [cited 2012 Jun 18]. http:\/\/www.dshs.state.tx.us\/idcu\/disease\/arboviral\/westNile\/"},{"key":"key-10.3201\/eid1909.130377-201308191028-R20","first-page":"95","article-title":"BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95\/98\/NT.","volume":"41","author":"Hall","year":"1999","journal-title":"Nucleic Acids Symposium Series."},{"key":"key-10.3201\/eid1909.130377-201308191028-R21","doi-asserted-by":"publisher","first-page":"392","DOI":"10.3201\/eid0804.010217","article-title":"Introduction of West Nile virus in the Middle East by migrating white storks.","volume":"8","author":"Malkinson","year":"2002","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid1909.130377-201308191028-R22","doi-asserted-by":"publisher","first-page":"1792","DOI":"10.1093\/nar\/gkh340","article-title":"MUSCLE: multiple sequence alignment with high accuracy and high throughput.","volume":"32","author":"Edgar","year":"2004","journal-title":"Nucleic Acids Res"},{"key":"key-10.3201\/eid1909.130377-201308191028-R23","doi-asserted-by":"publisher","first-page":"2455","DOI":"10.1093\/bioinformatics\/btq429","article-title":"Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology.","volume":"26","author":"Delport","year":"2010","journal-title":"Bioinformatics"},{"key":"key-10.3201\/eid1909.130377-201308191028-R24","doi-asserted-by":"publisher","first-page":"2531","DOI":"10.1093\/bioinformatics\/bti320","article-title":"Datamonkey: rapid detection of selective pressure on individual sites of codon alignments.","volume":"21","author":"Pond","year":"2005","journal-title":"Bioinformatics"},{"key":"key-10.3201\/eid1909.130377-201308191028-R25","doi-asserted-by":"publisher","first-page":"1208","DOI":"10.1093\/molbev\/msi105","article-title":"Not so different after all: a comparison of methods for detecting amino acid sites under selection.","volume":"22","author":"Kosakovsky Pond","year":"2005","journal-title":"Mol Biol Evol"},{"key":"key-10.3201\/eid1909.130377-201308191028-R26","doi-asserted-by":"publisher","first-page":"e62","DOI":"10.1371\/journal.pcbi.0020062","article-title":"Adaptation to different human populations by HIV-1 revealed by codon-based analyses.","volume":"2","author":"Pond","year":"2006","journal-title":"PLOS Comput Biol"},{"key":"key-10.3201\/eid1909.130377-201308191028-R27","doi-asserted-by":"publisher","first-page":"221","DOI":"10.1093\/molbev\/msp259","article-title":"Seaview version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building.","volume":"27","author":"Gouy","year":"2010","journal-title":"Mol Biol Evol"},{"key":"key-10.3201\/eid1909.130377-201308191028-R28","doi-asserted-by":"publisher","first-page":"2688","DOI":"10.1093\/bioinformatics\/btl446","article-title":"RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.","volume":"22","author":"Stamatakis","year":"2006","journal-title":"Bioinformatics"},{"key":"key-10.3201\/eid1909.130377-201308191028-R29","doi-asserted-by":"publisher","first-page":"758","DOI":"10.1080\/10635150802429642","article-title":"A fast bootstrapping algorithm for the RAxML web-servers.","volume":"57","author":"Stamatakis","year":"2008","journal-title":"Syst Biol"},{"key":"key-10.3201\/eid1909.130377-201308191028-R30","doi-asserted-by":"crossref","unstructured":"Miller MA, Pfeiffer W, Schwartz T. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE); November 14, 2010; New Orleans, Louisiana. Red Hook (NY): Curran Associates; 2010. p. 1\u20138.","DOI":"10.1109\/GCE.2010.5676129"},{"key":"key-10.3201\/eid1909.130377-201308191028-R31","doi-asserted-by":"publisher","first-page":"214","DOI":"10.1186\/1471-2148-7-214","article-title":"BEAST: Bayesian evolutionary analysis by sampling trees.","volume":"7","author":"Drummond","year":"2007","journal-title":"BMC Evol Biol"},{"key":"key-10.3201\/eid1909.130377-201308191028-R32","doi-asserted-by":"publisher","first-page":"5375","DOI":"10.1128\/JCM.42.11.5375-5377.2004","article-title":"Characterization of a West Nile virus isolate from a human on the Gulf Coast of Texas.","volume":"42","author":"Granwehr","year":"2004","journal-title":"J Clin Microbiol"},{"key":"key-10.3201\/eid1909.130377-201308191028-R33","doi-asserted-by":"crossref","first-page":"493","DOI":"10.4269\/ajtmh.2004.71.493","article-title":"Genetic and phenotypic variation of West Nile virus in New York, 2000\u20132003.","volume":"71","author":"Ebel","year":"2004","journal-title":"Am J Trop Med Hyg"}],"container-title":["Emerging Infectious Diseases"],"original-title":[],"link":[{"URL":"https:\/\/wwwnc.cdc.gov\/eid\/article\/19\/9\/13-0377_article","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,12,4]],"date-time":"2024-12-04T04:22:12Z","timestamp":1733286132000},"score":1,"resource":{"primary":{"URL":"http:\/\/wwwnc.cdc.gov\/eid\/article\/19\/9\/13-0377_article.htm"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,9]]},"references-count":33,"journal-issue":{"issue":"9","published-print":{"date-parts":[[2013,9]]}},"URL":"https:\/\/doi.org\/10.3201\/eid1909.130377","relation":{},"ISSN":["1080-6040","1080-6059"],"issn-type":[{"value":"1080-6040","type":"print"},{"value":"1080-6059","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,9]]}}}