{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,20]],"date-time":"2026-10-20T18:42:26Z","timestamp":1792521746596,"version":"4.5.0"},"reference-count":40,"publisher":"Centers for Disease Control and Prevention (CDC)","issue":"9","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Emerg. Infect. Dis."],"published-print":{"date-parts":[[2017,9]]},"DOI":"10.3201\/eid2309.170336","type":"journal-article","created":{"date-parts":[[2017,6,23]],"date-time":"2017-06-23T07:33:58Z","timestamp":1498203238000},"page":"1462-1470","source":"Crossref","is-referenced-by-count":181,"title":["Real-Time Whole-Genome Sequencing for Surveillance of\n                    <i>Listeria monocytogenes<\/i>\n                    , France"],"prefix":"10.3201","volume":"23","author":[{"given":"Alexandra","family":"Moura","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mathieu","family":"Tourdjman","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alexandre","family":"Leclercq","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Estelle","family":"Hamelin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Edith","family":"Laurent","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nathalie","family":"Fredriksen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dieter","family":"Van Cauteren","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"H\u00e9l\u00e8ne","family":"Bracq-Dieye","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pierre","family":"Thouvenot","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Guillaume","family":"Vales","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nathalie","family":"Tessaud-Rita","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Myl\u00e8ne M.","family":"Maury","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Andreea","family":"Alexandru","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alexis","family":"Criscuolo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Emmanuel","family":"Quevillon","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marie-Pierre","family":"Donguy","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Vincent","family":"Enouf","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Henriette","family":"de Valk","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sylvain","family":"Brisse","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marc","family":"Lecuit","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1822","reference":[{"key":"key-10.3201\/eid2309.170336-201708141202-R1","doi-asserted-by":"publisher","first-page":"430","DOI":"10.1111\/j.1469-0691.2005.01146.x","article-title":"Understanding how Listeria monocytogenes targets and crosses host barriers.","volume":"11","author":"Lecuit","year":"2005","journal-title":"Clin Microbiol Infect"},{"key":"key-10.3201\/eid2309.170336-201708141202-R2","doi-asserted-by":"publisher","first-page":"510","DOI":"10.1016\/S1473-3099(16)30521-7","article-title":"Clinical features and prognostic factors of listeriosis: the MONALISA national prospective cohort study.","volume":"17","author":"Charlier","year":"2017","journal-title":"Lancet Infect Dis"},{"key":"key-10.3201\/eid2309.170336-201708141202-R3","doi-asserted-by":"publisher","first-page":"734","DOI":"10.3201\/eid1405.071395","article-title":"Increasing incidence of listeriosis in France and other European countries.","volume":"14","author":"Goulet","year":"2008","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid2309.170336-201708141202-R4","unstructured":"European Centre for Disease Prevention and Control. Surveillance of seven priority food- and waterborne diseases in the EU\/EEA. Stockholm; 2015 [cited 2017 May 22]. http:\/\/ecdc.europa.eu\/en\/publications\/Publications\/food-and-waterborne-diseases-surveillance-report-2015.pdf"},{"key":"key-10.3201\/eid2309.170336-201708141202-R5","doi-asserted-by":"publisher","first-page":"7","DOI":"10.3201\/eid1701.P11101","article-title":"Foodborne illness acquired in the United States\u2014major pathogens.","volume":"17","author":"Scallan","year":"2011","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid2309.170336-201708141202-R6","doi-asserted-by":"publisher","first-page":"944","DOI":"10.1093\/aje\/154.10.944","article-title":"Two consecutive nationwide outbreaks of Listeriosis in France, October 1999-February 2000.","volume":"154","author":"de Valk","year":"2001","journal-title":"Am J Epidemiol"},{"key":"key-10.3201\/eid2309.170336-201708141202-R7","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3201\/eid1901.120393","article-title":"Listeriosis outbreaks and associated food vehicles, United States, 1998-2008.","volume":"19","author":"Cartwright","year":"2013","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid2309.170336-201708141202-R8","doi-asserted-by":"publisher","first-page":"2698","DOI":"10.1017\/S095026881500117X","article-title":"Multistate outbreak of listeriosis caused by imported cheese and evidence of cross-contamination of other cheeses, USA, 2012.","volume":"144","author":"Heiman","year":"2016","journal-title":"Epidemiol Infect"},{"key":"key-10.3201\/eid2309.170336-201708141202-R9","doi-asserted-by":"publisher","first-page":"64","DOI":"10.1093\/cid\/ciw192","article-title":"Whole-genome sequencing used to investigate a nationwide outbreak of listeriosis caused by ready-to-eat delicatessen meat, Denmark, 2014.","volume":"63","author":"Kvistholm Jensen","year":"2016","journal-title":"Clin Infect Dis"},{"key":"key-10.3201\/eid2309.170336-201708141202-R10","doi-asserted-by":"crossref","first-page":"2009","DOI":"10.2807\/ese.15.05.19477-en","article-title":"Listeriosis outbreak caused by acid curd cheese Quargel, Austria and Germany 2009.","volume":"15","author":"Fretz","year":"2010","journal-title":"Euro Surveill"},{"key":"key-10.3201\/eid2309.170336-201708141202-R11","doi-asserted-by":"publisher","first-page":"1027","DOI":"10.1016\/S1473-3099(14)70903-X","article-title":"Global burden of listeriosis: the tip of the iceberg.","volume":"14","author":"Leclercq","year":"2014","journal-title":"Lancet Infect Dis"},{"key":"key-10.3201\/eid2309.170336-201708141202-R12","doi-asserted-by":"publisher","first-page":"150","DOI":"10.4315\/0362-028X.JFP-13-150","article-title":"Listeria monocytogenes persistence in food-associated environments: epidemiology, strain characteristics, and implications for public health.","volume":"77","author":"Ferreira","year":"2014","journal-title":"J Food Prot"},{"key":"key-10.3201\/eid2309.170336-201708141202-R13","doi-asserted-by":"publisher","first-page":"2944","DOI":"10.1128\/AEM.03715-12","article-title":"Genome sequencing identifies two nearly unchanged strains of persistent Listeria monocytogenes isolated at two different fish processing plants sampled 6 years apart.","volume":"79","author":"Holch","year":"2013","journal-title":"Appl Environ Microbiol"},{"key":"key-10.3201\/eid2309.170336-201708141202-R14","doi-asserted-by":"publisher","first-page":"966","DOI":"10.1089\/fpd.2015.1965","article-title":"Economic cost of a Listeria monocytogenes outbreak in Canada, 2008.","volume":"12","author":"Thomas","year":"2015","journal-title":"Foodborne Pathog Dis"},{"key":"key-10.3201\/eid2309.170336-201708141202-R15","unstructured":"EUR-Lex. Access to European Union law [cited 2017 May 22]. http:\/\/eur-lex.europa.eu\/legal-content\/en\/ALL\/?uri=CELEX:32005R2073"},{"key":"key-10.3201\/eid2309.170336-201708141202-R16","unstructured":"United States Department of Agriculture. Food Safety and Inspection Service. Compliance guides index [cited May 22]. https:\/\/www.fsis.usda.gov\/wps\/portal\/fsis\/topics\/regulatory-compliance\/compliance-guides-index#Listeria"},{"key":"key-10.3201\/eid2309.170336-201708141202-R17","doi-asserted-by":"publisher","first-page":"55","DOI":"10.1016\/S0168-1605(00)00501-8","article-title":"PulseNet standardized protocol for subtyping Listeria monocytogenes by macrorestriction and pulsed-field gel electrophoresis.","volume":"65","author":"Graves","year":"2001","journal-title":"Int J Food Microbiol"},{"key":"key-10.3201\/eid2309.170336-201708141202-R18","doi-asserted-by":"publisher","first-page":"303","DOI":"10.1089\/fpd.2006.3.303","article-title":"Pulsed-field gel electrophoresis of Listeria monocytogenes strains: the PulseNet Europe Feasibility Study.","volume":"3","author":"Martin","year":"2006","journal-title":"Foodborne Pathog Dis"},{"key":"key-10.3201\/eid2309.170336-201708141202-R19","doi-asserted-by":"publisher","first-page":"380","DOI":"10.1093\/cid\/ciw242","article-title":"Implementation of nationwide real-time whole-genome sequencing to enhance listeriosis outbreak detection and investigation.","volume":"63","author":"Jackson","year":"2016","journal-title":"Clin Infect Dis"},{"key":"key-10.3201\/eid2309.170336-201708141202-R20","doi-asserted-by":"publisher","first-page":"16185","DOI":"10.1038\/nmicrobiol.2016.185","article-title":"Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes.","volume":"2","author":"Moura","year":"2016","journal-title":"Nat Microbiol"},{"key":"key-10.3201\/eid2309.170336-201708141202-R21","doi-asserted-by":"crossref","first-page":"20380","DOI":"10.2807\/ese.18.04.20380-en","article-title":"Overview of molecular typing methods for outbreak detection and epidemiological surveillance.","volume":"18","author":"Sabat","year":"2013","journal-title":"Euro Surveill"},{"key":"key-10.3201\/eid2309.170336-201708141202-R22","doi-asserted-by":"publisher","first-page":"1306","DOI":"10.3201\/eid2008.131399","article-title":"Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar enteritidis.","volume":"20","author":"den Bakker","year":"2014","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid2309.170336-201708141202-R23","doi-asserted-by":"publisher","first-page":"261","DOI":"10.3390\/genes3020261","article-title":"A gene-by-gene approach to bacterial population genomics: whole genome MLST of Campylobacter.","volume":"3","author":"Sheppard","year":"2012","journal-title":"Genes (Basel)"},{"key":"key-10.3201\/eid2309.170336-201708141202-R24","doi-asserted-by":"publisher","first-page":"728","DOI":"10.1038\/nrmicro3093","article-title":"MLST revisited: the gene-by-gene approach to bacterial genomics.","volume":"11","author":"Maiden","year":"2013","journal-title":"Nat Rev Microbiol"},{"key":"key-10.3201\/eid2309.170336-201708141202-R25","doi-asserted-by":"publisher","first-page":"1138","DOI":"10.1186\/1471-2164-15-1138","article-title":"A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes.","volume":"15","author":"Bratcher","year":"2014","journal-title":"BMC Genomics"},{"key":"key-10.3201\/eid2309.170336-201708141202-R26","doi-asserted-by":"publisher","first-page":"2479","DOI":"10.1128\/JCM.00567-14","article-title":"Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach.","volume":"52","author":"Kohl","year":"2014","journal-title":"J Clin Microbiol"},{"key":"key-10.3201\/eid2309.170336-201708141202-R27","doi-asserted-by":"publisher","first-page":"3046","DOI":"10.1128\/JCM.01312-12","article-title":"Resolution of a meningococcal disease outbreak from whole-genome sequence data with rapid Web-based analysis methods.","volume":"50","author":"Jolley","year":"2012","journal-title":"J Clin Microbiol"},{"key":"key-10.3201\/eid2309.170336-201708141202-R28","doi-asserted-by":"publisher","first-page":"3788","DOI":"10.1128\/JCM.01946-15","article-title":"Core genome multilocus sequence typing scheme for high-resolution typing of Enterococcus faecium.","volume":"53","author":"de Been","year":"2015","journal-title":"J Clin Microbiol"},{"key":"key-10.3201\/eid2309.170336-201708141202-R29","doi-asserted-by":"publisher","first-page":"1","DOI":"10.2807\/1560-7917.ES2015.20.28.21186","article-title":"Design and application of a core genome multilocus sequence typing scheme for investigation of Legionnaires\u2019 disease incidents.","volume":"20","author":"Moran-Gilad","year":"2015","journal-title":"Euro Surveill"},{"key":"key-10.3201\/eid2309.170336-201708141202-R30","doi-asserted-by":"publisher","first-page":"2526","DOI":"10.1128\/JCM.00066-13","article-title":"Real-time genomic epidemiological evaluation of human Campylobacter isolates by use of whole-genome multilocus sequence typing.","volume":"51","author":"Cody","year":"2013","journal-title":"J Clin Microbiol"},{"key":"key-10.3201\/eid2309.170336-201708141202-R31","unstructured":"Centers for Disease Control and Prevention. Standard operating procedure for PulseNet PFGE of\n                      Listeria monocytogenes\n                      , 2013 [cited 2017 May 21]. http:\/\/www.cdc.gov\/pulsenet\/PDF\/listeria-pfge-protocol-508c.pdf"},{"key":"key-10.3201\/eid2309.170336-201708141202-R32","doi-asserted-by":"publisher","first-page":"500","DOI":"10.1016\/j.ygeno.2013.07.011","article-title":"AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads.","volume":"102","author":"Criscuolo","year":"2013","journal-title":"Genomics"},{"key":"key-10.3201\/eid2309.170336-201708141202-R33","doi-asserted-by":"crossref","first-page":"900","DOI":"10.12688\/f1000research.6924.1","article-title":"The khmer software package: enabling efficient nucleotide sequence analysis.","volume":"4","author":"Crusoe","year":"2015","journal-title":"F1000Res"},{"key":"key-10.3201\/eid2309.170336-201708141202-R34","doi-asserted-by":"publisher","first-page":"308","DOI":"10.1093\/bioinformatics\/bts690","article-title":"Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data.","volume":"29","author":"Liu","year":"2013","journal-title":"Bioinformatics"},{"key":"key-10.3201\/eid2309.170336-201708141202-R35","doi-asserted-by":"publisher","first-page":"2957","DOI":"10.1093\/bioinformatics\/btr507","article-title":"FLASH: fast length adjustment of short reads to improve genome assemblies.","volume":"27","author":"Mago\u010d","year":"2011","journal-title":"Bioinformatics"},{"key":"key-10.3201\/eid2309.170336-201708141202-R36","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool.","volume":"215","author":"Altschul","year":"1990","journal-title":"J Mol Biol"},{"key":"key-10.3201\/eid2309.170336-201708141202-R37","doi-asserted-by":"publisher","first-page":"595","DOI":"10.1186\/1471-2105-11-595","article-title":"BIGSdb: Scalable analysis of bacterial genome variation at the population level.","volume":"11","author":"Jolley","year":"2010","journal-title":"BMC Bioinformatics"},{"key":"key-10.3201\/eid2309.170336-201708141202-R38","doi-asserted-by":"publisher","first-page":"688","DOI":"10.1038\/163688a0","article-title":"Measurement of diversity.","volume":"163","author":"Simpson","year":"1949","journal-title":"Nature"},{"key":"key-10.3201\/eid2309.170336-201708141202-R39","doi-asserted-by":"publisher","first-page":"3997","DOI":"10.1128\/JCM.00624-11","article-title":"Adjusted Wallace coefficient as a measure of congruence between typing methods.","volume":"49","author":"Severiano","year":"2011","journal-title":"J Clin Microbiol"},{"key":"key-10.3201\/eid2309.170336-201708141202-R40","doi-asserted-by":"publisher","first-page":"38","DOI":"10.1016\/j.jhin.2014.12.014","article-title":"Whole-genome sequencing in hierarchy with pulsed-field gel electrophoresis: the utility of this approach to establish possible sources of MRSA cross-transmission.","volume":"90","author":"Moore","year":"2015","journal-title":"J Hosp Infect"}],"container-title":["Emerging Infectious Diseases"],"original-title":[],"link":[{"URL":"https:\/\/wwwnc.cdc.gov\/eid\/article\/23\/9\/17-0336_article","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,11,29]],"date-time":"2024-11-29T18:33:17Z","timestamp":1732905197000},"score":1,"resource":{"primary":{"URL":"http:\/\/wwwnc.cdc.gov\/eid\/article\/23\/9\/17-0336_article.htm"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,9]]},"references-count":40,"journal-issue":{"issue":"9","published-print":{"date-parts":[[2017,9]]}},"URL":"https:\/\/doi.org\/10.3201\/eid2309.170336","relation":{},"ISSN":["1080-6040","1080-6059"],"issn-type":[{"value":"1080-6040","type":"print"},{"value":"1080-6059","type":"electronic"}],"subject":[],"published":{"date-parts":[[2017,9]]}}}