{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,31]],"date-time":"2026-08-31T15:17:32Z","timestamp":1788189452620,"version":"build-2803163510"},"reference-count":43,"publisher":"Centers for Disease Control and Prevention (CDC)","issue":"7","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Emerg. Infect. Dis."],"published-print":{"date-parts":[[2022,7]]},"DOI":"10.3201\/eid2807.211528","type":"journal-article","created":{"date-parts":[[2022,6,21]],"date-time":"2022-06-21T12:36:20Z","timestamp":1655814980000},"page":"1410-1420","source":"Crossref","is-referenced-by-count":16,"title":["One Health Genomic Analysis of Extended-Spectrum \u03b2-Lactamase\u2012Producing <i>Salmonella enterica<\/i>, Canada, 2012\u20122016"],"prefix":"10.3201","volume":"28","author":[{"given":"Amrita","family":"Bharat","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Laura","family":"Mataseje","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"E. Jane","family":"Parmley","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Brent P.","family":"Avery","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Graham","family":"Cox","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Carolee A.","family":"Carson","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rebecca J.","family":"Irwin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Anne E.","family":"Deckert","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Danielle","family":"Daignault","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"David C.","family":"Alexander","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Vanessa","family":"Allen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sameh","family":"El Bailey","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sadjia","family":"Bekal","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Greg J.","family":"German","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"David","family":"Haldane","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Linda","family":"Hoang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Linda","family":"Chui","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jessica","family":"Minion","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"George","family":"Zahariadis","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Richard J.","family":"Reid-Smith","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Michael R.","family":"Mulvey","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1822","reference":[{"key":"key-10.3201\/eid2807.211528-202206162025-R1","first-page":"1312","article-title":"GBD 2017 Non-typhoidal Salmonella invasive disease collaborators. The global burden of non-typhoidal Salmonella invasive disease: a systematic analysis for the Global Burden of Disease Study 2017.","volume":"19","year":"2019","journal-title":"Lancet Infect Dis"},{"key":"key-10.3201\/eid2807.211528-202206162025-R2","doi-asserted-by":"publisher","first-page":"1736","DOI":"10.1016\/S0140-6736(18)32203-7","article-title":"Global, regional, and national age-sex-specific mortality for 282 causes of death in 195 countries and territories, 1980-2017: a systematic analysis for the Global Burden of Disease Study 2017.","volume":"392","author":"Roth","year":"2018","journal-title":"Lancet"},{"key":"key-10.3201\/eid2807.211528-202206162025-R3","doi-asserted-by":"publisher","first-page":"1963","DOI":"10.1093\/cid\/cix959","article-title":"2017 Infectious Diseases Society of America Clinical Practice Guidelines for the Diagnosis and Management of Infectious Diarrhea.","volume":"65","author":"Shane","year":"2017","journal-title":"Clin Infect Dis"},{"key":"key-10.3201\/eid2807.211528-202206162025-R4","doi-asserted-by":"publisher","first-page":"e01076","DOI":"10.1128\/AAC.01076-18","article-title":"Past and present perspectives on \u03b2-lactamases.","volume":"62","author":"Bush","year":"2018","journal-title":"Antimicrob Agents Chemother"},{"key":"key-10.3201\/eid2807.211528-202206162025-R5","doi-asserted-by":"publisher","first-page":"61","DOI":"10.3390\/antibiotics9020061","article-title":"Carbapenem-sparing strategies for ESBL producers: when and how.","volume":"9","author":"Karaiskos","year":"2020","journal-title":"Antibiotics (Basel)"},{"key":"key-10.3201\/eid2807.211528-202206162025-R6","doi-asserted-by":"publisher","first-page":"1432","DOI":"10.1038\/s41564-019-0503-9","article-title":"Defining and combating antibiotic resistance from One Health and Global Health perspectives.","volume":"4","author":"Hernando-Amado","year":"2019","journal-title":"Nat Microbiol"},{"key":"key-10.3201\/eid2807.211528-202206162025-R7","unstructured":"Chicken Farms of Canada. Preventative use of category I antibiotics in the poultry and egg sectors, 2013 [cited 2020 Dec 19]. https:\/\/www.chickenfarmers.ca\/antibiotics"},{"key":"key-10.3201\/eid2807.211528-202206162025-R8","unstructured":"Health Canada. Responsible use of medically important antimicrobials in animals. 2020. p. 1\u201215 [cited 2020 Dec 18]. https:\/\/www.canada.ca\/en\/public-health\/services\/antibiotic-antimicrobial-resistance\/animals\/actions\/responsible-use-antimicrobials.html"},{"key":"key-10.3201\/eid2807.211528-202206162025-R9","doi-asserted-by":"publisher","first-page":"iv64","DOI":"10.1093\/jac\/dkz289","article-title":"Dramatic rise in the proportion of ESBL-producing Escherichia coli and Klebsiella pneumoniae among clinical isolates identified in Canadian hospital laboratories from 2007 to 2016.","volume":"74","author":"Denisuik","year":"2019","journal-title":"J Antimicrob Chemother"},{"key":"key-10.3201\/eid2807.211528-202206162025-R10","doi-asserted-by":"publisher","first-page":"1165","DOI":"10.1093\/jac\/dkz571","article-title":"Longitudinal analysis of ESBL and carbapenemase carriage among Enterobacterales and Pseudomonas aeruginosa isolates collected in Europe as part of the International Network for Optimal Resistance Monitoring (INFORM) global surveillance programme, 2013-17.","volume":"75","author":"Kazmierczak","year":"2020","journal-title":"J Antimicrob Chemother"},{"key":"key-10.3201\/eid2807.211528-202206162025-R11","doi-asserted-by":"publisher","first-page":"S449","DOI":"10.1093\/cid\/ciz450","article-title":"Multicountry distribution and characterization of extended-spectrum \u03b2-lactamase-associated Gram-negative bacteria from bloodstream infections in Sub-Saharan Africa.","volume":"69","author":"Toy","year":"2019","journal-title":"Clin Infect Dis"},{"key":"key-10.3201\/eid2807.211528-202206162025-R12","doi-asserted-by":"publisher","first-page":"191","DOI":"10.1089\/mdr.2012.0178","article-title":"Occurrence of \u03b2-lactamase genes among non-Typhi Salmonella enterica isolated from humans, food animals, and retail meats in the United States and Canada.","volume":"19","author":"Sj\u00f6lund-Karlsson","year":"2013","journal-title":"Microb Drug Resist"},{"key":"key-10.3201\/eid2807.211528-202206162025-R13","doi-asserted-by":"publisher","first-page":"1503","DOI":"10.1089\/fpd.2010.0607","article-title":"Salmonella isolates with decreased susceptibility to extended-spectrum cephalosporins in the United States.","volume":"7","author":"Sj\u00f6lund-Karlsson","year":"2010","journal-title":"Foodborne Pathog Dis"},{"key":"key-10.3201\/eid2807.211528-202206162025-R14","doi-asserted-by":"publisher","first-page":"97","DOI":"10.3201\/eid1701.100511","article-title":"CTX-M-producing non-Typhi Salmonella spp. isolated from humans, United States.","volume":"17","author":"Sj\u00f6lund-Karlsson","year":"2011","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid2807.211528-202206162025-R15","unstructured":"CIPARS. Canadian Integrated Program for Antimicrobial Resistance Surveillance (CIPARS), 2018: design and methods. 2020. p. 1\u201357 [cited 2022 May 3]. https:\/\/www.canada.ca\/en\/public-health\/services\/surveillance\/canadian-integrated-program-antimicrobial-resistance-surveillance-cipars\/cipars-reports\/2018-annual-report-design-methods.html"},{"key":"key-10.3201\/eid2807.211528-202206162025-R16","unstructured":"Clinical and Laboratory Standards Institute. Performance standards for antimicrobial susceptibility testing (M100\u2013ED29). Wayne (PA); The Institute; 2019. p. 1\u2013321 [cited 2022 May 3]. https:\/\/clsi.org\/media\/2663\/m100ed29_sample.pdf"},{"key":"key-10.3201\/eid2807.211528-202206162025-R17","doi-asserted-by":"publisher","first-page":"103","DOI":"10.3201\/eid1701.101358","article-title":"New Delhi metallo-\u03b2-lactamase in Klebsiella pneumoniae and Escherichia coli, Canada.","volume":"17","author":"Mulvey","year":"2011","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid2807.211528-202206162025-R18","doi-asserted-by":"publisher","first-page":"455","DOI":"10.1089\/cmb.2012.0021","article-title":"SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.","volume":"19","author":"Bankevich","year":"2012","journal-title":"J Comput Biol"},{"key":"key-10.3201\/eid2807.211528-202206162025-R19","doi-asserted-by":"publisher","first-page":"e1005595","DOI":"10.1371\/journal.pcbi.1005595","article-title":"Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.","volume":"13","author":"Wick","year":"2017","journal-title":"PLOS Comput Biol"},{"key":"key-10.3201\/eid2807.211528-202206162025-R20","doi-asserted-by":"publisher","first-page":"292","DOI":"10.3390\/microorganisms10020292","article-title":"Correlation between phenotypic and in silico detection of antimicrobial resistance in Salmonella enterica in Canada using Staramr.","volume":"10","author":"Bharat","year":"2022","journal-title":"Microorganisms"},{"key":"key-10.3201\/eid2807.211528-202206162025-R21","doi-asserted-by":"publisher","first-page":"2640","DOI":"10.1093\/jac\/dks261","article-title":"Identification of acquired antimicrobial resistance genes.","volume":"67","author":"Zankari","year":"2012","journal-title":"J Antimicrob Chemother"},{"key":"key-10.3201\/eid2807.211528-202206162025-R22","doi-asserted-by":"publisher","first-page":"2764","DOI":"10.1093\/jac\/dkx217","article-title":"PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens.","volume":"72","author":"Zankari","year":"2017","journal-title":"J Antimicrob Chemother"},{"key":"key-10.3201\/eid2807.211528-202206162025-R23","doi-asserted-by":"publisher","first-page":"e000116","DOI":"10.1099\/mgen.0.000116","article-title":"SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology.","volume":"3","author":"Petkau","year":"2017","journal-title":"Microb Genom"},{"key":"key-10.3201\/eid2807.211528-202206162025-R24","doi-asserted-by":"publisher","first-page":"307","DOI":"10.1093\/sysbio\/syq010","article-title":"New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.","volume":"59","author":"Guindon","year":"2010","journal-title":"Syst Biol"},{"key":"key-10.3201\/eid2807.211528-202206162025-R25","doi-asserted-by":"publisher","first-page":"1673","DOI":"10.1099\/jmm.0.000854","article-title":"Characterization of a colistin-resistant Salmonella enterica 4,[5],12:i:- harbouring mcr-3.2 on a variant IncHI-2 plasmid identified in Canada.","volume":"67","author":"Mulvey","year":"2018","journal-title":"J Med Microbiol"},{"key":"key-10.3201\/eid2807.211528-202206162025-R26","doi-asserted-by":"publisher","first-page":"e00488","DOI":"10.1128\/AAC.00488-17","article-title":"Comparative analysis of extended-spectrum-\u03b2-lactamase CTX-M-65\u2012producing Salmonella enterica serovar Infantis isolates from humans, food animals, and retail chickens in the United States.","volume":"61","author":"Tate","year":"2017","journal-title":"Antimicrob Agents Chemother"},{"key":"key-10.3201\/eid2807.211528-202206162025-R27","doi-asserted-by":"publisher","first-page":"92","DOI":"10.1016\/j.plasmid.2010.05.005","article-title":"Complete genome sequence of the incompatibility group I1 plasmid R64.","volume":"64","author":"Sampei","year":"2010","journal-title":"Plasmid"},{"key":"key-10.3201\/eid2807.211528-202206162025-R28","doi-asserted-by":"publisher","first-page":"2284","DOI":"10.3201\/eid2412.180500","article-title":"CTX-M-65 Extended-spectrum \u03b2-lactamase\u2012producing Salmonella enterica serotype Infantis, United States.","volume":"24","author":"Brown","year":"2018","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid2807.211528-202206162025-R29","unstructured":"Health Canada. Categorization of antimicrobial drugs based on importance in human medicine. 2020. p. 1\u20129 [cited 2020 Dec 22]. https:\/\/www.canada.ca\/en\/health-canada\/services\/drugs-health-products\/veterinary-drugs\/antimicrobial-resistance\/categorization-antimicrobial-drugs-based-importance-human-medicine.html"},{"key":"key-10.3201\/eid2807.211528-202206162025-R30","doi-asserted-by":"publisher","first-page":"1529","DOI":"10.1007\/s40265-019-01180-3","article-title":"Extended-spectrum \u03b2-lactamase\u2012producing Enterobacteriaceae: update on molecular epidemiology and treatment options.","volume":"79","author":"Peirano","year":"2019","journal-title":"Drugs"},{"key":"key-10.3201\/eid2807.211528-202206162025-R31","doi-asserted-by":"publisher","first-page":"1268","DOI":"10.3389\/fmicb.2019.01268","article-title":"The emergence of chromosomally located blaCTX-M-55 in Salmonella from foodborne animals in China.","volume":"10","author":"Zhang","year":"2019","journal-title":"Front Microbiol"},{"key":"key-10.3201\/eid2807.211528-202206162025-R32","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1128\/AAC.00092-20","article-title":"Epidemiological study on prevalence, serovar diversity, multidrug resistance, and CTX-M-type extended-spectrum \u03b2-lactamases of Salmonella spp. from patients with diarrhea, food of animal origin, and pets in several provinces of China.","volume":"64","author":"Wang","year":"2020","journal-title":"Antimicrob Agents Chemother"},{"key":"key-10.3201\/eid2807.211528-202206162025-R33","doi-asserted-by":"publisher","first-page":"2145","DOI":"10.1093\/jac\/dkx146","article-title":"Global epidemiology of CTX-M \u03b2-lactamases: temporal and geographical shifts in genotype.","volume":"72","author":"Bevan","year":"2017","journal-title":"J Antimicrob Chemother"},{"key":"key-10.3201\/eid2807.211528-202206162025-R34","doi-asserted-by":"publisher","first-page":"e0144802","DOI":"10.1371\/journal.pone.0144802","article-title":"Emergence of a clonal lineage of multidrug-resistant ESBL-producing Salmonella Infantis transmitted from broilers and broiler meat to humans in Italy between 2011 and 2014.","volume":"10","author":"Franco","year":"2015","journal-title":"PLoS One"},{"key":"key-10.3201\/eid2807.211528-202206162025-R35","doi-asserted-by":"publisher","first-page":"e000365","DOI":"10.1099\/mgen.0.000365","article-title":"Molecular epidemiology of Salmonella Infantis in Europe: insights into the success of the bacterial host and its parasitic pESI-like megaplasmid.","volume":"6","author":"Alba","year":"2020","journal-title":"Microb Genom"},{"key":"key-10.3201\/eid2807.211528-202206162025-R36","doi-asserted-by":"publisher","first-page":"000658","DOI":"10.1099\/mgen.0.000658","article-title":"Characterization of a pESI-like plasmid and analysis of multidrug-resistant Salmonella enterica Infantis isolates in England and Wales.","volume":"7","author":"Lee","year":"2021","journal-title":"Microb Genom"},{"key":"key-10.3201\/eid2807.211528-202206162025-R37","doi-asserted-by":"publisher","first-page":"406","DOI":"10.1016\/j.bjid.2016.03.007","article-title":"Characterization of a small outbreak of Salmonella enterica serovar Infantis that harbour CTX-M-65 in Ecuador.","volume":"20","author":"Cartelle Gestal","year":"2016","journal-title":"Braz J Infect Dis"},{"key":"key-10.3201\/eid2807.211528-202206162025-R38","doi-asserted-by":"publisher","first-page":"109109","DOI":"10.1016\/j.ijfoodmicro.2021.109109","article-title":"Dissemination of a multidrug resistant CTX-M-65 producer Salmonella enterica serovar Infantis clone between marketed chicken meat and children.","volume":"344","author":"Mart\u00ednez-Puchol","year":"2021","journal-title":"Int J Food Microbiol"},{"key":"key-10.3201\/eid2807.211528-202206162025-R39","doi-asserted-by":"publisher","first-page":"e1004776","DOI":"10.1371\/journal.pgen.1004776","article-title":"Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages.","volume":"10","author":"de Been","year":"2014","journal-title":"PLoS Genet"},{"key":"key-10.3201\/eid2807.211528-202206162025-R40","doi-asserted-by":"publisher","first-page":"436","DOI":"10.3389\/fcimb.2017.00436","article-title":"CTX-M-27 producing Salmonella enterica serotypes Typhimurium and Indiana are prevalent among food-producing animals in China.","volume":"7","author":"Zhang","year":"2016","journal-title":"Front Microbiol"},{"key":"key-10.3201\/eid2807.211528-202206162025-R41","doi-asserted-by":"publisher","first-page":"901","DOI":"10.1128\/AAC.02602-18","article-title":"Circulation of plasmids harboring resistance genes to quinolones and\/or extended-spectrum cephalosporins in multiple Salmonella enterica serotypes from swine in the United States.","volume":"63","author":"Elnekave","year":"2019","journal-title":"Antimicrob Agents Chemother"},{"key":"key-10.3201\/eid2807.211528-202206162025-R42","doi-asserted-by":"publisher","first-page":"310","DOI":"10.1093\/cid\/ciw283","article-title":"Fecal colonization with extended-spectrum beta-lactamase-producing Enterobacteriaceae and risk factors among healthy individuals: a systematic review and metaanalysis.","volume":"63","author":"Karanika","year":"2016","journal-title":"Clin Infect Dis"},{"key":"key-10.3201\/eid2807.211528-202206162025-R43","doi-asserted-by":"publisher","first-page":"e570","DOI":"10.1128\/AAC.02581-19","article-title":"Importation of extensively drug-resistant Salmonella enterica serovar Typhi cases in Ontario, Canada.","volume":"64","author":"Eshaghi","year":"2020","journal-title":"Antimicrob Agents Chemother"}],"container-title":["Emerging Infectious Diseases"],"original-title":[],"link":[{"URL":"https:\/\/wwwnc.cdc.gov\/eid\/article\/28\/7\/21-1528_article","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,11,30]],"date-time":"2024-11-30T17:56:06Z","timestamp":1732989366000},"score":1,"resource":{"primary":{"URL":"https:\/\/wwwnc.cdc.gov\/eid\/article\/28\/7\/21-1528_article.htm"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,7]]},"references-count":43,"journal-issue":{"issue":"7","published-print":{"date-parts":[[2022,7]]}},"URL":"https:\/\/doi.org\/10.3201\/eid2807.211528","relation":{},"ISSN":["1080-6040","1080-6059"],"issn-type":[{"value":"1080-6040","type":"print"},{"value":"1080-6059","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,7]]}}}