{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,16]],"date-time":"2026-09-16T14:48:17Z","timestamp":1789570097178,"version":"build-2803163510"},"reference-count":33,"publisher":"Centers for Disease Control and Prevention (CDC)","issue":"8","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Emerg. Infect. Dis."],"published-print":{"date-parts":[[2024,8]]},"DOI":"10.3201\/eid3008.240529","type":"journal-article","created":{"date-parts":[[2024,7,30]],"date-time":"2024-07-30T03:13:02Z","timestamp":1722309182000},"source":"Crossref","is-referenced-by-count":9,"title":["Metagenomic Detection of Bacterial Zoonotic Pathogens among Febrile Patients, Tanzania, 2007\u201320091"],"prefix":"10.3201","volume":"30","author":[{"given":"Robert J.","family":"Rolfe","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sarah W.","family":"Sheldon","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Luke C.","family":"Kingry","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jeannine M.","family":"Petersen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Venance P.","family":"Maro","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Grace D.","family":"Kinabo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wilbrod","family":"Saganda","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Michael J.","family":"Maze","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jo E.B.","family":"Halliday","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"William L.","family":"Nicholson","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Renee L.","family":"Galloway","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Matthew P.","family":"Rubach","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"John A.","family":"Crump","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1822","reference":[{"key":"key-10.3201\/eid3008.240529-202407101358-R1","doi-asserted-by":"publisher","first-page":"e0127962","DOI":"10.1371\/journal.pone.0127962","article-title":"Etiology of severe febrile illness in low- and middle-income countries: a systematic review.","volume":"10","author":"Prasad","year":"2015","journal-title":"PLoS One"},{"key":"key-10.3201\/eid3008.240529-202407101358-R2","doi-asserted-by":"publisher","first-page":"883","DOI":"10.3201\/eid2205.150953","article-title":"Q fever, scrub typhus, and rickettsial diseases in children, Kenya, 2011\u20132012.","volume":"22","author":"Maina","year":"2016","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid3008.240529-202407101358-R3","doi-asserted-by":"publisher","first-page":"e0004858","DOI":"10.1371\/journal.pntd.0004858","article-title":"Leptospira seroprevalence and risk factors in health centre patients in Hoima District, Western Uganda.","volume":"10","author":"Dreyfus","year":"2016","journal-title":"PLoS Negl Trop Dis"},{"key":"key-10.3201\/eid3008.240529-202407101358-R4","doi-asserted-by":"publisher","first-page":"e8","DOI":"10.1093\/cid\/cir411","article-title":"Q fever, spotted fever group, and typhus group rickettsioses among hospitalized febrile patients in northern Tanzania.","volume":"53","author":"Prabhu","year":"2011","journal-title":"Clin Infect Dis"},{"key":"key-10.3201\/eid3008.240529-202407101358-R5","doi-asserted-by":"publisher","first-page":"275","DOI":"10.4269\/ajtmh.2011.11-0176","article-title":"Leptospirosis among hospitalized febrile patients in northern Tanzania.","volume":"85","author":"Biggs","year":"2011","journal-title":"Am J Trop Med Hyg"},{"key":"key-10.3201\/eid3008.240529-202407101358-R6","doi-asserted-by":"publisher","first-page":"e2324","DOI":"10.1371\/journal.pntd.0002324","article-title":"Etiology of severe non-malaria febrile illness in Northern Tanzania: a prospective cohort study.","volume":"7","author":"Crump","year":"2013","journal-title":"PLoS Negl Trop Dis"},{"key":"key-10.3201\/eid3008.240529-202407101358-R7","doi-asserted-by":"publisher","first-page":"e0006372","DOI":"10.1371\/journal.pntd.0006372","article-title":"Risk factors for human acute leptospirosis in northern Tanzania.","volume":"12","author":"Maze","year":"2018","journal-title":"PLoS Negl Trop Dis"},{"key":"key-10.3201\/eid3008.240529-202407101358-R8","doi-asserted-by":"publisher","first-page":"494","DOI":"10.4269\/ajtmh.20-1036","article-title":"Incidence estimates of acute Q fever and spotted fever group rickettsioses, Kilimanjaro, Tanzania, from 2007 to 2008 and from 2012 to 2014.","volume":"106","author":"Pisharody","year":"2021","journal-title":"Am J Trop Med Hyg"},{"key":"key-10.3201\/eid3008.240529-202407101358-R9","doi-asserted-by":"publisher","first-page":"1427","DOI":"10.4269\/ajtmh.19-0703","article-title":"Molecular detection and typing of pathogenic Leptospira in febrile patients and phylogenetic comparison with Leptospira detected among animals in Tanzania.","volume":"103","author":"Allan","year":"2020","journal-title":"Am J Trop Med Hyg"},{"key":"key-10.3201\/eid3008.240529-202407101358-R10","doi-asserted-by":"publisher","first-page":"375","DOI":"10.7861\/clinmed.2019-0180","article-title":"Fever, bacterial zoonoses, and One Health in sub-Saharan Africa.","volume":"19","author":"Carugati","year":"2019","journal-title":"Clin Med (Lond)"},{"key":"key-10.3201\/eid3008.240529-202407101358-R11","doi-asserted-by":"publisher","first-page":"e00147","DOI":"10.1128\/JCM.00147-20","article-title":"Targeted metagenomics for clinical detection and discovery of bacterial tick-borne pathogens.","volume":"58","author":"Kingry","year":"2020","journal-title":"J Clin Microbiol"},{"key":"key-10.3201\/eid3008.240529-202407101358-R12","doi-asserted-by":"publisher","first-page":"830","DOI":"10.1111\/j.1365-3156.2011.02774.x","article-title":"Invasive bacterial and fungal infections among hospitalized HIV-infected and HIV-uninfected children and infants in northern Tanzania.","volume":"16","author":"Crump","year":"2011","journal-title":"Trop Med Int Health"},{"key":"key-10.3201\/eid3008.240529-202407101358-R13","doi-asserted-by":"publisher","first-page":"341","DOI":"10.1093\/cid\/ciq103","article-title":"Invasive bacterial and fungal infections among hospitalized HIV-infected and HIV-uninfected adults and adolescents in northern Tanzania.","volume":"52","author":"Crump","year":"2011","journal-title":"Clin Infect Dis"},{"key":"key-10.3201\/eid3008.240529-202407101358-R14","doi-asserted-by":"publisher","first-page":"R46","DOI":"10.1186\/gb-2014-15-3-r46","article-title":"Kraken: ultrafast metagenomic sequence classification using exact alignments.","volume":"15","author":"Wood","year":"2014","journal-title":"Genome Biol"},{"key":"key-10.3201\/eid3008.240529-202407101358-R15","doi-asserted-by":"publisher","first-page":"1547","DOI":"10.1093\/molbev\/msy096","article-title":"MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms.","volume":"35","author":"Kumar","year":"2018","journal-title":"Mol Biol Evol"},{"key":"key-10.3201\/eid3008.240529-202407101358-R16","unstructured":"Yoshida K, Bartel A, Chipman JJ, Bohn J, D\u2019Augustino McGowan C, Barrett M,  tableone: create \u2018Table 1\u2019 to describe baseline characteristics with or without propensity score weights [cited 2023 Dec 13]. https:\/\/cloud.r-project.org\/web\/packages\/tableone\/tableone.pdf"},{"key":"key-10.3201\/eid3008.240529-202407101358-R17","doi-asserted-by":"publisher","first-page":"1686","DOI":"10.21105\/joss.01686","article-title":"Welcome to the tidyverse.","volume":"4","author":"Wickham","year":"2019","journal-title":"J Open Source Softw"},{"key":"key-10.3201\/eid3008.240529-202407101358-R18","doi-asserted-by":"publisher","first-page":"407","DOI":"10.3201\/eid2902.221451","article-title":"Neoehrlichiosis in symptomatic immunocompetent child, South Africa.","volume":"29","author":"Bamford","year":"2023","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid3008.240529-202407101358-R19","doi-asserted-by":"publisher","first-page":"e667","DOI":"10.1016\/j.ijid.2009.11.011","article-title":"Fleas and flea-borne diseases.","volume":"14","author":"Bitam","year":"2010","journal-title":"Int J Infect Dis"},{"key":"key-10.3201\/eid3008.240529-202407101358-R20","doi-asserted-by":"publisher","first-page":"e3152","DOI":"10.1371\/journal.pntd.0003152","article-title":"Detection of Rickettsia felis, Rickettsia typhi, Bartonella species and Yersinia pestis in fleas (Siphonaptera) from Africa.","volume":"8","author":"Leulmi","year":"2014","journal-title":"PLoS Negl Trop Dis"},{"key":"key-10.3201\/eid3008.240529-202407101358-R21","doi-asserted-by":"publisher","first-page":"e0223667","DOI":"10.1371\/journal.pone.0223667","article-title":"Molecular detection and genetic characterization of Bartonella species from rodents and their associated ectoparasites from northern Tanzania.","volume":"14","author":"Theonest","year":"2019","journal-title":"PLoS One"},{"key":"key-10.3201\/eid3008.240529-202407101358-R22","doi-asserted-by":"publisher","first-page":"332","DOI":"10.1111\/j.1469-0691.2012.03778.x","article-title":"Human louse-transmitted infectious diseases.","volume":"18","author":"Badiaga","year":"2012","journal-title":"Clin Microbiol Infect"},{"key":"key-10.3201\/eid3008.240529-202407101358-R23","first-page":"324","article-title":"Kinetics of antibody responses in Rickettsia africae and Rickettsia conorii infections.","volume":"9","author":"Fournier","year":"2002","journal-title":"Clin Diagn Lab Immunol"},{"key":"key-10.3201\/eid3008.240529-202407101358-R24","doi-asserted-by":"publisher","first-page":"602","DOI":"10.1007\/s00508-016-1047-0","article-title":"Molecular diagnosis of African tick bite fever using eschar swabs in a traveller returning from Tanzania.","volume":"128","author":"Harrison","year":"2016","journal-title":"Wien Klin Wochenschr"},{"key":"key-10.3201\/eid3008.240529-202407101358-R25","doi-asserted-by":"publisher","first-page":"1493","DOI":"10.1086\/425365","article-title":"Rickettsioses and the international traveler.","volume":"39","author":"Jensenius","year":"2004","journal-title":"Clin Infect Dis"},{"key":"key-10.3201\/eid3008.240529-202407101358-R26","doi-asserted-by":"publisher","first-page":"1086","DOI":"10.4269\/ajtmh.2005.73.1086","article-title":"Laboratory-confirmed Mediterranean spotted fever in a Japanese traveler to Kenya.","volume":"73","author":"Yoshikawa","year":"2005","journal-title":"Am J Trop Med Hyg"},{"key":"key-10.3201\/eid3008.240529-202407101358-R27","doi-asserted-by":"publisher","first-page":"910","DOI":"10.3201\/eid1005.030537","article-title":"Fatal spotted fever rickettsiosis, Kenya.","volume":"10","author":"Rutherford","year":"2004","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid3008.240529-202407101358-R28","doi-asserted-by":"publisher","first-page":"360","DOI":"10.1089\/vbz.2012.0977","article-title":"Zoonotic surveillance for rickettsiae in domestic animals in Kenya.","volume":"13","author":"Mutai","year":"2013","journal-title":"Vector Borne Zoonotic Dis"},{"key":"key-10.3201\/eid3008.240529-202407101358-R29","doi-asserted-by":"publisher","first-page":"191","DOI":"10.1007\/s10493-016-0035-4","article-title":"Phylogeography of Rhipicephalus sanguineus sensu lato and its relationships with climatic factors.","volume":"69","author":"Zemtsova","year":"2016","journal-title":"Exp Appl Acarol"},{"key":"key-10.3201\/eid3008.240529-202407101358-R30","doi-asserted-by":"publisher","first-page":"303","DOI":"10.1007\/s10493-007-9123-9","article-title":"Cattle ticks of the genera Rhipicephalus and Amblyomma of economic importance in Tanzania: distribution assessed with GIS based on an extensive field survey.","volume":"43","author":"Lynen","year":"2007","journal-title":"Exp Appl Acarol"},{"key":"key-10.3201\/eid3008.240529-202407101358-R31","doi-asserted-by":"publisher","first-page":"281","DOI":"10.3201\/eid2202.141762","article-title":"Anaplasmataceae-specific PCR for diagnosis and therapeutic guidance for symptomatic neoehrlichiosis in immunocompetent host.","volume":"22","author":"Schwameis","year":"2016","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid3008.240529-202407101358-R32","doi-asserted-by":"publisher","first-page":"e0009918","DOI":"10.1371\/journal.pntd.0009918","article-title":"Epidemiology of leptospirosis in Tanzania: A review of the current status, serogroup diversity and reservoirs.","volume":"15","author":"Motto","year":"2021","journal-title":"PLoS Negl Trop Dis"},{"key":"key-10.3201\/eid3008.240529-202407101358-R33","doi-asserted-by":"publisher","first-page":"161","DOI":"10.1111\/tmi.13965","article-title":"Global distribution of Leptospira serovar isolations and detections from animal host species: A systematic review and online database.","volume":"29","author":"Hagedoorn","year":"2024","journal-title":"Trop Med Int Health"}],"container-title":["Emerging Infectious Diseases"],"original-title":[],"link":[{"URL":"https:\/\/wwwnc.cdc.gov\/eid\/article\/30\/8\/24-0529_article","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,11,29]],"date-time":"2024-11-29T18:38:33Z","timestamp":1732905513000},"score":1,"resource":{"primary":{"URL":"https:\/\/wwwnc.cdc.gov\/eid\/article\/30\/8\/24-0529_article"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,8]]},"references-count":33,"journal-issue":{"issue":"8","published-print":{"date-parts":[[2024,8]]}},"URL":"https:\/\/doi.org\/10.3201\/eid3008.240529","relation":{},"ISSN":["1080-6040","1080-6059"],"issn-type":[{"value":"1080-6040","type":"print"},{"value":"1080-6059","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,8]]}}}