{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,18]],"date-time":"2026-08-18T15:18:07Z","timestamp":1787066287015,"version":"build-2736575974"},"reference-count":25,"publisher":"Centers for Disease Control and Prevention (CDC)","issue":"2","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Emerg. Infect. Dis."],"published-print":{"date-parts":[[2025,2]]},"DOI":"10.3201\/eid3102.241777","type":"journal-article","created":{"date-parts":[[2025,1,17]],"date-time":"2025-01-17T16:04:02Z","timestamp":1737129842000},"source":"Crossref","is-referenced-by-count":7,"title":["Epidemiologic and Genomic Surveillance of\n                    <i>Vibrio cholerae<\/i>\n                    and Effectiveness of Single-Dose Oral Cholera Vaccine, Democratic Republic of the Congo"],"prefix":"10.3201","volume":"31","author":[{"given":"Christine Marie","family":"George","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alves","family":"Namunesha","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kelly","family":"Endres","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Willy","family":"Felicien","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Presence","family":"Sanvura","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jean-Claude","family":"Bisimwa","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jamie","family":"Perin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Justin","family":"Bengehya","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ghislain","family":"Maheshe","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Cirhuza","family":"Cikomola","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lucien","family":"Bisimwa","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alain","family":"Mwishingo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"David A.","family":"Sack","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Daryl","family":"Domman","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1822","reference":[{"key":"key-10.3201\/eid3102.241777-202501161406-R1","doi-asserted-by":"publisher","first-page":"e0003832","DOI":"10.1371\/journal.pntd.0003832","article-title":"Updated global burden of cholera in endemic countries.","volume":"9","author":"Ali","year":"2015","journal-title":"PLoS Negl Trop Dis"},{"key":"key-10.3201\/eid3102.241777-202501161406-R2","doi-asserted-by":"publisher","first-page":"1908","DOI":"10.1016\/S0140-6736(17)33050-7","article-title":"Mapping the burden of cholera in sub-Saharan Africa and implications for control: an analysis of data across geographical scales.","volume":"391","author":"Lessler","year":"2018","journal-title":"Lancet"},{"key":"key-10.3201\/eid3102.241777-202501161406-R3","unstructured":"Global Task Force on Cholera Control. Ending cholera: a global roadmap to 2030 [cited 2024 Sep 23]. https:\/\/www.gtfcc.org\/wp-content\/uploads\/2020\/09\/ending-cholera-a-global-roadmap-to-2030.pdf"},{"key":"key-10.3201\/eid3102.241777-202501161406-R4","unstructured":"World Health Organization. Shortage of cholera vaccines leads to temporary suspension of two-dose strategy, as cases rise worldwide [cited 2024 Oct 13]. https:\/\/www.who.int\/news\/item\/19-10-2022-shortage-of-cholera-vaccines-leads-to-temporary-suspension-of-two-dose-strategy--as-cases-rise-worldwide"},{"key":"key-10.3201\/eid3102.241777-202501161406-R5","doi-asserted-by":"publisher","first-page":"6291","DOI":"10.1038\/s41467-024-50484-w","article-title":"Genomic insights into the 2022-2023Vibrio cholerae outbreak in Malawi.","volume":"15","author":"Chaguza","year":"2024","journal-title":"Nat Commun"},{"key":"key-10.3201\/eid3102.241777-202501161406-R6","doi-asserted-by":"publisher","first-page":"785","DOI":"10.1126\/science.aad5901","article-title":"Genomic history of the seventh pandemic of cholera in Africa.","volume":"358","author":"Weill","year":"2017","journal-title":"Science"},{"key":"key-10.3201\/eid3102.241777-202501161406-R7","doi-asserted-by":"publisher","first-page":"2399950","DOI":"10.1080\/22221751.2024.2399950","article-title":"Genomic evolution and rearrangement of CTX\u2013\u03a6 prophage elements in Vibrio cholerae during the 2018\u20132024 cholera outbreaks in eastern Democratic Republic of the Congo.","volume":"13","author":"Irenge","year":"2024","journal-title":"Emerg Microbes Infect"},{"key":"key-10.3201\/eid3102.241777-202501161406-R8","doi-asserted-by":"publisher","first-page":"149","DOI":"10.3201\/eid2901.220641","article-title":"Genomic Microevolution of Vibrio cholerae O1, Lake Tanganyika Basin, Africa.","volume":"29","author":"Hounmanou","year":"2023","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid3102.241777-202501161406-R9","doi-asserted-by":"publisher","first-page":"903","DOI":"10.1186\/s12864-017-4254-9","article-title":"Genetic relatedness of Vibrio cholerae isolates within and between households during outbreaks in Dhaka, Bangladesh.","volume":"18","author":"George","year":"2017","journal-title":"BMC Genomics"},{"key":"key-10.3201\/eid3102.241777-202501161406-R10","unstructured":"World Health Organization. Manual for the laboratory identification and antimicrobial susceptibility testing of bacterial pathogens of public health importance in the developing world. 2003 [cited 2024 Sep 20]. https:\/\/www.who.int\/publications\/i\/item\/WHO-CDS-CSR-RMD-2003.6"},{"key":"key-10.3201\/eid3102.241777-202501161406-R11","doi-asserted-by":"publisher","first-page":"537","DOI":"10.4269\/ajtmh.15-0496","article-title":"Clinical and environmental surveillance for Vibrio cholerae in resource constrained areas: application during a 1-year surveillance in the far north region of Cameroon.","volume":"94","author":"Debes","year":"2016","journal-title":"Am J Trop Med Hyg"},{"key":"key-10.3201\/eid3102.241777-202501161406-R12","doi-asserted-by":"publisher","first-page":"e00190","DOI":"10.1128\/mSystems.00190-20","article-title":"Bactopia: a flexible pipeline for complete analysis of bacterial genomes.","volume":"5","author":"Petit","year":"2020","journal-title":"mSystems"},{"key":"key-10.3201\/eid3102.241777-202501161406-R13","doi-asserted-by":"publisher","first-page":"455","DOI":"10.1089\/cmb.2012.0021","article-title":"SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.","volume":"19","author":"Bankevich","year":"2012","journal-title":"J Comput Biol"},{"key":"key-10.3201\/eid3102.241777-202501161406-R14","doi-asserted-by":"publisher","first-page":"2068","DOI":"10.1093\/bioinformatics\/btu153","article-title":"Prokka: rapid prokaryotic genome annotation.","volume":"30","author":"Seemann","year":"2014","journal-title":"Bioinformatics"},{"key":"key-10.3201\/eid3102.241777-202501161406-R15","doi-asserted-by":"publisher","first-page":"1043","DOI":"10.1101\/gr.186072.114","article-title":"CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.","volume":"25","author":"Parks","year":"2015","journal-title":"Genome Res"},{"key":"key-10.3201\/eid3102.241777-202501161406-R16","doi-asserted-by":"publisher","first-page":"R46","DOI":"10.1186\/gb-2014-15-3-r46","article-title":"Kraken: ultrafast metagenomic sequence classification using exact alignments.","volume":"15","author":"Wood","year":"2014","journal-title":"Genome Biol"},{"key":"key-10.3201\/eid3102.241777-202501161406-R17","doi-asserted-by":"publisher","first-page":"1687","DOI":"10.3201\/eid2908.230750","article-title":"Imported cholera cases, South Africa, 2023.","volume":"29","author":"Smith","year":"2023","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid3102.241777-202501161406-R18","doi-asserted-by":"publisher","first-page":"1530","DOI":"10.1093\/molbev\/msaa015","article-title":"IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era.","volume":"37","author":"Minh","year":"2020","journal-title":"Mol Biol Evol"},{"key":"key-10.3201\/eid3102.241777-202501161406-R19","doi-asserted-by":"publisher","first-page":"28","DOI":"10.1111\/2041-210X.12628","article-title":"Evolution. GGTREE: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data.","volume":"8","author":"Yu","year":"2017","journal-title":"Methods Ecol Evol"},{"key":"key-10.3201\/eid3102.241777-202501161406-R20","doi-asserted-by":"publisher","first-page":"e000093","DOI":"10.1099\/mgen.0.000093","article-title":"Microreact: visualizing and sharing data for genomic epidemiology and phylogeography.","volume":"2","author":"Argim\u00f3n","year":"2016","journal-title":"Microb Genom"},{"key":"key-10.3201\/eid3102.241777-202501161406-R21","doi-asserted-by":"publisher","first-page":"1395","DOI":"10.1101\/gr.232397.117","article-title":"GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens.","volume":"28","author":"Zhou","year":"2018","journal-title":"Genome Res"},{"key":"key-10.3201\/eid3102.241777-202501161406-R22","doi-asserted-by":"publisher","first-page":"112","DOI":"10.1007\/s11524-018-0264-4","article-title":"Revealing and responding to multiple health risks in informal settlements in sub-Saharan African cities.","volume":"96","author":"Satterthwaite","year":"2019","journal-title":"J Urban Health"},{"key":"key-10.3201\/eid3102.241777-202501161406-R23","doi-asserted-by":"publisher","first-page":"2482","DOI":"10.3201\/eid2812.220572","article-title":"Emergence and evolutionary response of Vibrio cholerae to novel bacteriophage, Democratic Republic of the Congo.","volume":"28","author":"Alam","year":"2022","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid3102.241777-202501161406-R24","doi-asserted-by":"publisher","first-page":"e0005044","DOI":"10.1371\/journal.pntd.0005044","article-title":"Retrospective analysis of serotype switching of Vibrio cholerae O1 in a cholera endemic region shows it is a non-random process.","volume":"10","author":"Karlsson","year":"2016","journal-title":"PLoS Negl Trop Dis"},{"key":"key-10.3201\/eid3102.241777-202501161406-R25","doi-asserted-by":"publisher","first-page":"514","DOI":"10.1016\/S1473-3099(23)00742-9","article-title":"Effectiveness of one dose of killed oral cholera vaccine in an endemic community in the Democratic Republic of the Congo: a matched case-control study.","volume":"24","author":"Malembaka","year":"2024","journal-title":"Lancet Infect Dis"}],"container-title":["Emerging Infectious Diseases"],"original-title":[],"deposited":{"date-parts":[[2025,1,17]],"date-time":"2025-01-17T16:04:04Z","timestamp":1737129844000},"score":1,"resource":{"primary":{"URL":"https:\/\/wwwnc.cdc.gov\/eid\/article\/31\/2\/24-1777_article"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,2]]},"references-count":25,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2025,2]]}},"URL":"https:\/\/doi.org\/10.3201\/eid3102.241777","relation":{},"ISSN":["1080-6040","1080-6059"],"issn-type":[{"value":"1080-6040","type":"print"},{"value":"1080-6059","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,2]]}}}