{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,20]],"date-time":"2026-10-20T18:43:03Z","timestamp":1792521783058,"version":"4.5.0"},"reference-count":23,"publisher":"Centers for Disease Control and Prevention (CDC)","issue":"4","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Emerg. Infect. Dis."],"published-print":{"date-parts":[[2025,4]]},"DOI":"10.3201\/eid3104.241172","type":"journal-article","created":{"date-parts":[[2025,3,20]],"date-time":"2025-03-20T14:50:16Z","timestamp":1742482216000},"source":"Crossref","is-referenced-by-count":19,"title":["Attribution of <i>Salmonella enterica<\/i> to Food Sources by Using Whole-Genome Sequencing Data"],"prefix":"10.3201","volume":"31","author":[{"given":"Erica Billig","family":"Rose","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Molly K.","family":"Steele","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Beth","family":"Tolar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"James","family":"Pettengill","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Michael","family":"Batz","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Michael","family":"Bazaco","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Berhanu","family":"Tameru","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhaohui","family":"Cui","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rebecca L.","family":"Lindsey","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mustafa","family":"Simmons","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jess","family":"Chen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Drew","family":"Posny","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Heather","family":"Carleton","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Beau B.","family":"Bruce","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1822","reference":[{"key":"key-10.3201\/eid3104.241172-202503201041-R1","doi-asserted-by":"publisher","first-page":"7","DOI":"10.3201\/eid1701.P11101","article-title":"Foodborne illness acquired in the United States\u2014major pathogens.","volume":"17","author":"Scallan","year":"2011","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid3104.241172-202503201041-R2","doi-asserted-by":"crossref","first-page":"182","DOI":"10.3201\/eid2701.200316","article-title":"Attribution of illnesses transmitted by food and water to comprehensive transmission pathways using structured expert judgment, United States.","volume":"27","author":"Beshearse","year":"2021","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid3104.241172-202503201041-R3","doi-asserted-by":"crossref","first-page":"1006","DOI":"10.1046\/j.1365-2958.2000.01907.x","article-title":"Host adaptation and the emergence of infectious disease: the Salmonella paradigm.","volume":"36","author":"Kingsley","year":"2000","journal-title":"Mol Microbiol"},{"key":"key-10.3201\/eid3104.241172-202503201041-R4","doi-asserted-by":"crossref","first-page":"229","DOI":"10.1017\/S0950268899004379","article-title":"Host adapted serotypes of Salmonella enterica.","volume":"125","author":"Uzzau","year":"2000","journal-title":"Epidemiol Infect"},{"key":"key-10.3201\/eid3104.241172-202503201041-R5","doi-asserted-by":"publisher","first-page":"2249","DOI":"10.1128\/IAI.70.5.2249-2255.2002","article-title":"Salmonella enterica serotype Typhimurium and its host-adapted variants.","volume":"70","author":"Rabsch","year":"2002","journal-title":"Infect Immun"},{"key":"key-10.3201\/eid3104.241172-202503201041-R6","unstructured":"Interagency Food Safety Analytics Collaboration. Foodborne illness source attribution estimates for 2020 for Salmonella, Escherichia coli O157, Listeria monocytogenes, and Campylobacter using multi-year outbreak surveillance data, United States. 2022 [cited 2023 Oct 19]. https:\/\/www.cdc.gov\/ifsac\/media\/pdfs\/P19-2020-report-TriAgency-508.pdf"},{"key":"key-10.3201\/eid3104.241172-202503201041-R7","doi-asserted-by":"publisher","first-page":"1193","DOI":"10.3201\/eid2207.150833","article-title":"Comparing characteristics of sporadic and outbreak-associated foodborne illnesses, United States, 2004\u20132011.","volume":"22","author":"Ebel","year":"2016","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid3104.241172-202503201041-R8","doi-asserted-by":"publisher","first-page":"667","DOI":"10.1089\/fpd.2014.1744","article-title":"Source attribution of human salmonellosis: an overview of methods and estimates.","volume":"11","author":"Pires","year":"2014","journal-title":"Foodborne Pathog Dis"},{"key":"key-10.3201\/eid3104.241172-202503201041-R9","doi-asserted-by":"publisher","first-page":"109636","DOI":"10.1016\/j.foodcont.2023.109636","article-title":"Attributing salmonellosis cases to foodborne, animal contact and waterborne routes using the microbial subtyping approach and exposure weights.","volume":"148","author":"Hurst","year":"2023","journal-title":"Food Control"},{"key":"key-10.3201\/eid3104.241172-202503201041-R10","doi-asserted-by":"publisher","first-page":"82","DOI":"10.3201\/eid2501.180835","article-title":"Zoonotic source attribution of Salmonella enterica serotype Typhimurium using genomic surveillance data, United States.","volume":"25","author":"Zhang","year":"2019","journal-title":"Emerg Infect Dis"},{"key":"key-10.3201\/eid3104.241172-202503201041-R11","doi-asserted-by":"publisher","first-page":"666767","DOI":"10.3389\/fvets.2021.666767","article-title":"Whole-genome comparative analysis reveals association between Salmonella genomic variation and egg production systems.","volume":"8","author":"Sodagari","year":"2021","journal-title":"Front Vet Sci"},{"key":"key-10.3201\/eid3104.241172-202503201041-R12","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1038\/s41597-020-0417-7","article-title":"Four European Salmonella Typhimurium datasets collected to develop WGS-based source attribution methods.","volume":"7","author":"Munck","year":"2020","journal-title":"Sci Data"},{"key":"key-10.3201\/eid3104.241172-202503201041-R13","doi-asserted-by":"publisher","first-page":"1693","DOI":"10.1111\/risa.13510","article-title":"Application of whole-genome sequences and machine learning in source attribution of Salmonella Typhimurium.","volume":"40","author":"Munck","year":"2020","journal-title":"Risk Anal"},{"key":"key-10.3201\/eid3104.241172-202503201041-R14","doi-asserted-by":"publisher","first-page":"e000135","DOI":"10.1099\/mgen.0.000135","article-title":"Patchy promiscuity: machine learning applied to predict the host specificity of Salmonella enterica and Escherichia coli.","volume":"3","author":"Lupolova","year":"2017","journal-title":"Microb Genom"},{"key":"key-10.3201\/eid3104.241172-202503201041-R15","doi-asserted-by":"publisher","first-page":"701","DOI":"10.1089\/fpd.2017.2324","article-title":"An updated scheme for categorizing foods implicated in foodborne disease outbreaks: a tri-agency collaboration.","volume":"14","author":"Richardson","year":"2017","journal-title":"Foodborne Pathog Dis"},{"key":"key-10.3201\/eid3104.241172-202503201041-R16","doi-asserted-by":"publisher","first-page":"1260","DOI":"10.15585\/mmwr.mm7140a2","article-title":"Preliminary incidence and trends of infections caused by pathogens transmitted commonly through food\u2014Foodborne Diseases Active Surveillance Network, 10 US Sites, 2016\u20132021.","volume":"71","author":"Collins","year":"2022","journal-title":"MMWR Morb Mortal Wkly Rep"},{"key":"key-10.3201\/eid3104.241172-202503201041-R17","doi-asserted-by":"publisher","first-page":"457","DOI":"10.1089\/fpd.2019.2637","article-title":"An overview of PulseNet USA databases.","volume":"16","author":"Tolar","year":"2019","journal-title":"Foodborne Pathog Dis"},{"key":"key-10.3201\/eid3104.241172-202503201041-R18","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1023\/A:1010933404324","article-title":"Random forests.","volume":"45","author":"Breiman","year":"2001","journal-title":"Mach Learn"},{"key":"key-10.3201\/eid3104.241172-202503201041-R19","doi-asserted-by":"publisher","first-page":"197","DOI":"10.1023\/A:1009869804967","article-title":"Partitioning nominal attributes in decision trees.","volume":"3","author":"Coppersmith","year":"1999","journal-title":"Data Min Knowl Discov"},{"key":"key-10.3201\/eid3104.241172-202503201041-R20","doi-asserted-by":"publisher","first-page":"885","DOI":"10.1007\/s11634-016-0276-4","article-title":"A computationally fast variable importance test for random forests for high-dimensional data.","volume":"12","author":"Janitza","year":"2018","journal-title":"Adv Data Anal Classif"},{"key":"key-10.3201\/eid3104.241172-202503201041-R21","doi-asserted-by":"publisher","first-page":"77","DOI":"10.18637\/jss.v077.i01","article-title":"ranger: a fast implementation of random forests for high dimensional data in C++ and R.","volume":"77","author":"Wright","year":"2017","journal-title":"J Stat Softw"},{"key":"key-10.3201\/eid3104.241172-202503201041-R22","doi-asserted-by":"publisher","first-page":"579888","DOI":"10.3389\/fmicb.2021.579888","article-title":"Bayesian source attribution of Salmonella Typhimurium isolates from human patients and farm animals in England and Wales.","volume":"12","author":"Arnold","year":"2021","journal-title":"Front Microbiol"},{"key":"key-10.3201\/eid3104.241172-202503201041-R23","doi-asserted-by":"publisher","first-page":"182","DOI":"10.3201\/eid2701.200316","article-title":"Attribution of illnesses transmitted by food and water to comprehensive transmission pathways using structured expert judgment, United States.","volume":"27","author":"Beshearse","year":"2021","journal-title":"Emerg Infect Dis"}],"container-title":["Emerging Infectious Diseases"],"original-title":[],"deposited":{"date-parts":[[2025,3,20]],"date-time":"2025-03-20T14:50:29Z","timestamp":1742482229000},"score":1,"resource":{"primary":{"URL":"https:\/\/wwwnc.cdc.gov\/eid\/article\/31\/4\/24-1172_article"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,4]]},"references-count":23,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2025,4]]}},"URL":"https:\/\/doi.org\/10.3201\/eid3104.241172","relation":{},"ISSN":["1080-6040","1080-6059"],"issn-type":[{"value":"1080-6040","type":"print"},{"value":"1080-6059","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,4]]}}}