{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,20]],"date-time":"2026-01-20T14:37:05Z","timestamp":1768919825053,"version":"3.49.0"},"reference-count":14,"publisher":"Centers for Disease Control and Prevention (CDC)","issue":"8","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Emerg. Infect. Dis."],"published-print":{"date-parts":[[2025,8]]},"DOI":"10.3201\/eid3108.250071","type":"journal-article","created":{"date-parts":[[2025,7,24]],"date-time":"2025-07-24T13:49:33Z","timestamp":1753364973000},"source":"Crossref","is-referenced-by-count":1,"title":["Genomic Surveillance Detection of SARS-CoV-1\u2013Like Viruses in Rhinolophidae Bats, Bandarban Region, Bangladesh"],"prefix":"10.3201","volume":"31","author":[{"given":"Christopher","family":"Bradburne","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ausraful","family":"Islam","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ian","family":"Bird","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Elliott","family":"Abbott","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sarah","family":"Harrison","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Morgan","family":"Chunn","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Diana","family":"Radune","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Md Rakib","family":"Hasan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Brian","family":"Janes","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sean","family":"Lovett","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"John","family":"Lagergren","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Timothy","family":"O\u2019Hanlon","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Konad","family":"Debnath","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Clifton","family":"McKee","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mohammad Enayet","family":"Hossain","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Molly","family":"Gallagher","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Daniel","family":"Jacobson","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mohammed Ziaur","family":"Rahman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Katie","family":"Caviness","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Raina K.","family":"Plowright","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Emily S.","family":"Gurley","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"1822","reference":[{"key":"key-10.3201\/eid3108.250071-202507161857-R1","doi-asserted-by":"publisher","first-page":"502","DOI":"10.1038\/nrmicro.2017.45","article-title":"Pathways to zoonotic spillover.","volume":"15","author":"Plowright","year":"2017","journal-title":"Nat Rev Microbiol"},{"key":"key-10.3201\/eid3108.250071-202507161857-R2","doi-asserted-by":"publisher","first-page":"340","DOI":"10.1038\/s41586-022-05506-2","article-title":"Pathogen spillover driven by rapid changes in bat ecology.","volume":"613","author":"Eby","year":"2023","journal-title":"Nature"},{"key":"key-10.3201\/eid3108.250071-202507161857-R3","doi-asserted-by":"crossref","unstructured":"Cashman M, Vergara VGM, Lagergren JH, Lane M, Merlet J, Atkinson M,  Longitudinal effects on plant species involved in agriculture and pandemic emergence undergoing changes in abiotic stress. In: Proceedings of the Platform for Advanced Scientific Computing conference; 2023 Jun 26\u201328; Davos, Switzerland. New York: ACM; 2023.","DOI":"10.1145\/3592979.3593402"},{"key":"key-10.3201\/eid3108.250071-202507161857-R4","doi-asserted-by":"publisher","first-page":"257","DOI":"10.1186\/s13059-019-1891-0","article-title":"Improved metagenomic analysis with Kraken 2.","volume":"20","author":"Wood","year":"2019","journal-title":"Genome Biol"},{"key":"key-10.3201\/eid3108.250071-202507161857-R5","doi-asserted-by":"publisher","first-page":"1399","DOI":"10.1126\/science.1085953","article-title":"The Genome sequence of the SARS-associated coronavirus.","volume":"300","author":"Marra","year":"2003","journal-title":"Science"},{"key":"key-10.3201\/eid3108.250071-202507161857-R6","doi-asserted-by":"publisher","first-page":"3059","DOI":"10.1093\/nar\/gkf436","article-title":"MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.","volume":"30","author":"Katoh","year":"2002","journal-title":"Nucleic Acids Res"},{"key":"key-10.3201\/eid3108.250071-202507161857-R7","doi-asserted-by":"publisher","first-page":"1530","DOI":"10.1093\/molbev\/msaa015","article-title":"IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era.","volume":"37","author":"Minh","year":"2020","journal-title":"Mol Biol Evol"},{"key":"key-10.3201\/eid3108.250071-202507161857-R8","doi-asserted-by":"publisher","first-page":"587","DOI":"10.1038\/nmeth.4285","article-title":"ModelFinder: fast model selection for accurate phylogenetic estimates.","volume":"14","author":"Kalyaanamoorthy","year":"2017","journal-title":"Nat Methods"},{"key":"key-10.3201\/eid3108.250071-202507161857-R9","doi-asserted-by":"publisher","first-page":"518","DOI":"10.1093\/molbev\/msx281","article-title":"UFBoot2: improving the ultrafast bootstrap approximation.","volume":"35","author":"Hoang","year":"2018","journal-title":"Mol Biol Evol"},{"key":"key-10.3201\/eid3108.250071-202507161857-R10","doi-asserted-by":"publisher","first-page":"3118","DOI":"10.1093\/bioinformatics\/btac287","article-title":"SimPlot++: a Python application for representing sequence similarity and detecting recombination.","volume":"38","author":"Samson","year":"2022","journal-title":"Bioinformatics"},{"key":"key-10.3201\/eid3108.250071-202507161857-R11","doi-asserted-by":"publisher","first-page":"1779","DOI":"10.1016\/S0140-6736(03)13414-9","article-title":"Comparative full-length genome sequence analysis of 14 SARS coronavirus isolates and common mutations associated with putative origins of infection.","volume":"361","author":"Ruan","year":"2003","journal-title":"Lancet"},{"key":"key-10.3201\/eid3108.250071-202507161857-R12","doi-asserted-by":"publisher","first-page":"2875","DOI":"10.1002\/bit.24564","article-title":"Protein interaction affinity determination by quantitative FRET technology.","volume":"109","author":"Song","year":"2012","journal-title":"Biotechnol Bioeng"},{"key":"key-10.3201\/eid3108.250071-202507161857-R13","doi-asserted-by":"crossref","unstructured":"Akhter T, Khan MMH, Nath S, Hasan S, Ahmed T. Photographic evidences of Pygmy white-toothed shrew Suncus etruscus in Bangladesh. Bangladesh J Zool. 52:337\u201340. 10.3329\/bjz.v52i3.80794","DOI":"10.3329\/bjz.v52i3.80794"},{"key":"key-10.3201\/eid3108.250071-202507161857-R14","doi-asserted-by":"publisher","first-page":"545","DOI":"10.1007\/s11262-019-01668-w","article-title":"Complete genome analysis of a SARS-like bat coronavirus identified in the Republic of Korea.","volume":"55","author":"Kim","year":"2019","journal-title":"Virus Genes"}],"container-title":["Emerging Infectious Diseases"],"original-title":[],"deposited":{"date-parts":[[2025,7,24]],"date-time":"2025-07-24T13:49:34Z","timestamp":1753364974000},"score":1,"resource":{"primary":{"URL":"https:\/\/wwwnc.cdc.gov\/eid\/article\/31\/8\/25-0071_article"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,8]]},"references-count":14,"journal-issue":{"issue":"8","published-print":{"date-parts":[[2025,8]]}},"URL":"https:\/\/doi.org\/10.3201\/eid3108.250071","relation":{},"ISSN":["1080-6040","1080-6059"],"issn-type":[{"value":"1080-6040","type":"print"},{"value":"1080-6059","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,8]]}}}