{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,22]],"date-time":"2025-12-22T08:12:25Z","timestamp":1766391145568},"reference-count":0,"publisher":"IOS Press","license":[{"start":{"date-parts":[[2022,6,6]],"date-time":"2022-06-06T00:00:00Z","timestamp":1654473600000},"content-version":"unspecified","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,6,6]]},"abstract":"<jats:p>Precision medicine seeks to improve the prevention, diagnosis and treatment of patients based on genetic characteristics unique to each person. In oncology, therapeutic decisions have been established based on the genomic characteristics of each patient\u2019s tumor. Data integration is key for the successful implementation of precision medicine since it is necessary for both studying a large volume of data from different sources and working with an interdisciplinary and translational vision. In this work, a bioinformatic process was successfully implemented that allows the integration of patients\u2019 genomic data, from two molecular biology laboratories, with their clinical data provided by their electronic medical records. For this, the REDCap data capture software, the cBioPortal visualization and analysis software, and a computer tool developed to automate the processing and annotation of the information in REDCap were used to be included in cBioPortal, for the \u201cMap of Tumor Genomic Actionability of Argentina\u201d project.<\/jats:p>","DOI":"10.3233\/shti220189","type":"book-chapter","created":{"date-parts":[[2022,6,7]],"date-time":"2022-06-07T09:33:48Z","timestamp":1654594428000},"source":"Crossref","is-referenced-by-count":5,"title":["Automatic Integration of Clinical and Genetic Data Using cBioPortal"],"prefix":"10.3233","author":[{"given":"Mauricio","family":"Brunner","sequence":"first","affiliation":[{"name":"Departamento de Inform\u00e1tica en Salud, Hospital Italiano de Buenos Aires, Buenos Aires, Argentina"}]},{"given":"Lucas","family":"Mullen","sequence":"additional","affiliation":[{"name":"Servicio de Anatom\u00eda Patol\u00f3gica, Hospital Italiano de Buenos Aires, Buenos Aires, Argentina"}]},{"given":"Federico","family":"Jauk","sequence":"additional","affiliation":[{"name":"Laboratorio de Secuenciaci\u00f3n, Hospital Italiano de Buenos Aires, Buenos Aires, Argentina"},{"name":"Instituto de Medicina Traslacional e Ingenier\u00eda Biom\u00e9dica, CONICET-IUHI-HIBA, Buenos Aires, Argentina"}]},{"given":"Javier","family":"Oliver","sequence":"additional","affiliation":[{"name":"Laboratorio de Secuenciaci\u00f3n, Hospital Italiano de Buenos Aires, Buenos Aires, Argentina"},{"name":"Laboratorio de Biolog\u00eda Molecular del C\u00e1ncer. Instituto de Investigaciones Biom\u00e9dicas de M\u00e1laga (IBIMA), M\u00e1laga, Espa\u00f1a"}]},{"given":"Federico","family":"Cayol","sequence":"additional","affiliation":[{"name":"Servicio de Oncolog\u00eda, Hospital Italiano de Buenos Aires, Buenos Aires, Argentina"}]},{"given":"Jos\u00e9","family":"Minata","sequence":"additional","affiliation":[{"name":"Servicio de Oncolog\u00eda, Hospital Italiano de Buenos Aires, Buenos Aires, Argentina"}]},{"given":"Victor","family":"Herrera","sequence":"additional","affiliation":[{"name":"Departamento de Investigaci\u00f3n, Hospital Italiano de Buenos Aires, Buenos Aires, Argentina"}]},{"given":"Walter","family":"Pavicic","sequence":"additional","affiliation":[{"name":"Instituto Multidisciplinario de Biolog\u00eda Celular (IMBICE), CONICET-CIC-UNLP, Buenos Aires, Argentina"}]},{"given":"Daniel","family":"Luna","sequence":"additional","affiliation":[{"name":"Departamento de Inform\u00e1tica en Salud, Hospital Italiano de Buenos Aires, Buenos Aires, Argentina"},{"name":"Instituto de Medicina Traslacional e Ingenier\u00eda Biom\u00e9dica, CONICET-IUHI-HIBA, Buenos Aires, Argentina"}]},{"given":"Marcelo","family":"Risk","sequence":"additional","affiliation":[{"name":"Instituto de Medicina Traslacional e Ingenier\u00eda Biom\u00e9dica, CONICET-IUHI-HIBA, Buenos Aires, Argentina"}]},{"given":"Hernan","family":"Garcia Rivello","sequence":"additional","affiliation":[{"name":"Servicio de Anatom\u00eda Patol\u00f3gica, Hospital Italiano de Buenos Aires, Buenos Aires, Argentina"},{"name":"Instituto de Medicina Traslacional e Ingenier\u00eda Biom\u00e9dica, CONICET-IUHI-HIBA, Buenos Aires, Argentina"}]},{"given":"Sonia","family":"Benitez","sequence":"additional","affiliation":[{"name":"Departamento de Inform\u00e1tica en Salud, Hospital Italiano de Buenos Aires, Buenos Aires, Argentina"},{"name":"Instituto de Medicina Traslacional e Ingenier\u00eda Biom\u00e9dica, CONICET-IUHI-HIBA, Buenos Aires, Argentina"}]}],"member":"7437","container-title":["Studies in Health Technology and Informatics","MEDINFO 2021: One World, One Health \u2013 Global Partnership for Digital Innovation"],"original-title":[],"link":[{"URL":"https:\/\/ebooks.iospress.nl\/pdf\/doi\/10.3233\/SHTI220189","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,6,7]],"date-time":"2022-06-07T09:33:49Z","timestamp":1654594429000},"score":1,"resource":{"primary":{"URL":"https:\/\/ebooks.iospress.nl\/doi\/10.3233\/SHTI220189"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,6,6]]},"references-count":0,"URL":"https:\/\/doi.org\/10.3233\/shti220189","relation":{},"ISSN":["0926-9630","1879-8365"],"issn-type":[{"value":"0926-9630","type":"print"},{"value":"1879-8365","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,6,6]]}}}