{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,5,17]],"date-time":"2025-05-17T04:04:30Z","timestamp":1747454670087,"version":"3.40.5"},"reference-count":0,"publisher":"IOS Press","isbn-type":[{"value":"9781643685960","type":"electronic"}],"license":[{"start":{"date-parts":[[2025,5,15]],"date-time":"2025-05-15T00:00:00Z","timestamp":1747267200000},"content-version":"unspecified","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2025,5,15]]},"abstract":"<jats:p>Without dedicated research and processing environments, researchers sometimes tend to use software downloaded from the internet on non-versioned data sets, making reproduction of the results very difficult while risking leaks of the sensitive data, by running it on their regular laptops. This also makes the process of analysis rather tedious and slow. The Data Science Orchestrator (DSO) aims to provide a easy solution to deploy different analysis tools in a turnkey solution making research safe and reproducible. By analyzing the requirements of researchers across our community we also identified a number of research infrastructure needs beyond this initial data analysis stage; therefore the scope of the DSO has expanded to provide federated analysis of data and repeated reporting using automated analysis pipelines that can be run at different intervals, hence extending its assistive impact beyond initial analysis.<\/jats:p>","DOI":"10.3233\/shti250438","type":"book-chapter","created":{"date-parts":[[2025,5,16]],"date-time":"2025-05-16T08:57:00Z","timestamp":1747385820000},"source":"Crossref","is-referenced-by-count":0,"title":["Data Science Orchestrator: A Containerized Trusted Research Environment for Flexible and Secure Analytical Pipelines"],"prefix":"10.3233","author":[{"given":"Jori","family":"Kern","sequence":"first","affiliation":[{"name":"Federated Information Systems, German Cancer Research Center (DKFZ), Heidelberg, Germany"},{"name":"Complex Medical Informatics, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany"},{"name":"Mannheim Institute for Intelligent Systems in Medicine, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany"},{"name":"German Cancer Consortium (DKTK), DKFZ, core center Heidelberg, Germany"},{"name":"DKFZ Hector Cancer Institute at the University Medical Center Mannheim, Germany"},{"name":"Helmholtz Institute for Translational Oncology Mainz (HI-TRON Mainz) \u2013 A Helmholtz Institute of the DKFZ, Mainz, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Markus","family":"Brechtel","sequence":"additional","affiliation":[{"name":"Goethe University Frankfurt, Faculty of Medicine, Institute for Digital Medicine and Clinical Data Science, Germany"},{"name":"University of Cologne, Faculty of Medicine and University Hospital Cologne, Department I for Internal Medicine, Cologne, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Philipp","family":"Kaluza","sequence":"additional","affiliation":[{"name":"Ghostroute Consulting"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tobias","family":"Kussel","sequence":"additional","affiliation":[{"name":"Federated Information Systems, German Cancer Research Center (DKFZ), Heidelberg, Germany"},{"name":"Complex Medical Informatics, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany"},{"name":"Mannheim Institute for Intelligent Systems in Medicine, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany"},{"name":"German Cancer Consortium (DKTK), DKFZ, core center Heidelberg, Germany"},{"name":"DKFZ Hector Cancer Institute at the University Medical Center Mannheim, Germany"},{"name":"Helmholtz Institute for Translational Oncology Mainz (HI-TRON Mainz) \u2013 A Helmholtz Institute of the DKFZ, Mainz, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"J\u00f6rg Janne","family":"Vehreschild","sequence":"additional","affiliation":[{"name":"Goethe University Frankfurt, Faculty of Medicine, Institute for Digital Medicine and Clinical Data Science, Germany"},{"name":"University of Cologne, Faculty of Medicine and University Hospital Cologne, Department I for Internal Medicine, Cologne, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Martin","family":"Lablans","sequence":"additional","affiliation":[{"name":"Federated Information Systems, German Cancer Research Center (DKFZ), Heidelberg, Germany"},{"name":"Complex Medical Informatics, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany"},{"name":"Mannheim Institute for Intelligent Systems in Medicine, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany"},{"name":"German Cancer Consortium (DKTK), DKFZ, core center Heidelberg, Germany"},{"name":"DKFZ Hector Cancer Institute at the University Medical Center Mannheim, Germany"},{"name":"Helmholtz Institute for Translational Oncology Mainz (HI-TRON Mainz) \u2013 A Helmholtz Institute of the DKFZ, Mainz, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"7437","container-title":["Studies in Health Technology and Informatics","Intelligent Health Systems \u2013 From Technology to Data and Knowledge"],"original-title":[],"link":[{"URL":"https:\/\/ebooks.iospress.nl\/pdf\/doi\/10.3233\/SHTI250438","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,5,16]],"date-time":"2025-05-16T08:57:00Z","timestamp":1747385820000},"score":1,"resource":{"primary":{"URL":"https:\/\/ebooks.iospress.nl\/doi\/10.3233\/SHTI250438"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,5,15]]},"ISBN":["9781643685960"],"references-count":0,"URL":"https:\/\/doi.org\/10.3233\/shti250438","relation":{},"ISSN":["0926-9630","1879-8365"],"issn-type":[{"value":"0926-9630","type":"print"},{"value":"1879-8365","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,5,15]]}}}