{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,8,15]],"date-time":"2025-08-15T01:03:59Z","timestamp":1755219839674,"version":"3.43.0"},"reference-count":0,"publisher":"IOS Press","isbn-type":[{"value":"9781643686080","type":"electronic"}],"license":[{"start":{"date-parts":[[2025,8,7]],"date-time":"2025-08-07T00:00:00Z","timestamp":1754524800000},"content-version":"unspecified","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2025,8,7]]},"abstract":"<jats:p>Invasive fungal infections (IFIs) pose significant risks to patients with weakened immune systems, requiring timely detection. To improve IFI detection from clinical reports, we explore the value of recent advances in NLP techniques for this task, including transformer-based pre-trained language models (PLMs) and generative large language models (LLMs). Experimental results show these methods are more effective for IFI detection than prior approaches, with a hybrid approach missing only one positive case over a public benchmark dataset, CHIFIR. These findings highlight the value of modern NLP methods, and the utility of combining diverse approaches.<\/jats:p>","DOI":"10.3233\/shti250990","type":"book-chapter","created":{"date-parts":[[2025,8,7]],"date-time":"2025-08-07T11:37:29Z","timestamp":1754566649000},"source":"Crossref","is-referenced-by-count":0,"title":["Automated Detection of Invasive Fungal Infections in Clinical Reports Using Medical Language Models"],"prefix":"10.3233","author":[{"ORCID":"https:\/\/orcid.org\/0009-0000-6929-2804","authenticated-orcid":false,"given":"Wei","family":"Han","sequence":"first","affiliation":[{"name":"School of Computing Technologies, RMIT University, Melbourne, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8969-9318","authenticated-orcid":false,"given":"David","family":"Martinez","sequence":"additional","affiliation":[{"name":"School of Computing Technologies, RMIT University, Melbourne, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1032-4650","authenticated-orcid":false,"given":"Vlada","family":"Rozova","sequence":"additional","affiliation":[{"name":"Centre for Digital Transformation of Health, University of Melbourne"},{"name":"School of Computing and Information Systems, University of Melbourne, Melbourne, Australia"},{"name":"National Centre for Infections in Cancer, Melbourne, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7464-857X","authenticated-orcid":false,"given":"Lawrence","family":"Cavedon","sequence":"additional","affiliation":[{"name":"School of Computing Technologies, RMIT University, Melbourne, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2988-1676","authenticated-orcid":false,"given":"Anna","family":"Khanina","sequence":"additional","affiliation":[{"name":"National Centre for Infections in Cancer, Melbourne, Australia"},{"name":"Department of Infectious Disease, Peter MacCallum Cancer Centre, Melbourne, Australia"},{"name":"Sir Peter MacCallum Department of Oncology, University of Melbourne, Melbourne, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4304-6845","authenticated-orcid":false,"given":"Leon J.","family":"Worth","sequence":"additional","affiliation":[{"name":"National Centre for Infections in Cancer, Melbourne, Australia"},{"name":"Department of Infectious Disease, Peter MacCallum Cancer Centre, Melbourne, Australia"},{"name":"Sir Peter MacCallum Department of Oncology, University of Melbourne, Melbourne, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8443-314X","authenticated-orcid":false,"given":"Monica A.","family":"Slavin","sequence":"additional","affiliation":[{"name":"National Centre for Infections in Cancer, Melbourne, Australia"},{"name":"Department of Infectious Disease, Peter MacCallum Cancer Centre, Melbourne, Australia"},{"name":"Victorian Infectious Diseases Service, Royal Melbourne Hospital"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7400-232X","authenticated-orcid":false,"given":"Karin A.","family":"Thursky","sequence":"additional","affiliation":[{"name":"National Centre for Infections in Cancer, Melbourne, Australia"},{"name":"Department of Infectious Disease, Peter MacCallum Cancer Centre, Melbourne, Australia"},{"name":"Sir Peter MacCallum Department of Oncology, University of Melbourne, Melbourne, Australia"},{"name":"National Centre for Antimicrobial Stewardship, Peter Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8661-1544","authenticated-orcid":false,"given":"Karin","family":"Verspoor","sequence":"additional","affiliation":[{"name":"School of Computing Technologies, RMIT University, Melbourne, Australia"},{"name":"School of Computing and Information Systems, University of Melbourne, Melbourne, Australia"},{"name":"National Centre for Infections in Cancer, Melbourne, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"7437","container-title":["Studies in Health Technology and Informatics","MEDINFO 2025 \u2014 Healthcare Smart \u00d7 Medicine Deep"],"original-title":[],"link":[{"URL":"https:\/\/ebooks.iospress.nl\/pdf\/doi\/10.3233\/SHTI250990","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,8,7]],"date-time":"2025-08-07T11:37:29Z","timestamp":1754566649000},"score":1,"resource":{"primary":{"URL":"https:\/\/ebooks.iospress.nl\/doi\/10.3233\/SHTI250990"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,8,7]]},"ISBN":["9781643686080"],"references-count":0,"URL":"https:\/\/doi.org\/10.3233\/shti250990","relation":{},"ISSN":["0926-9630","1879-8365"],"issn-type":[{"value":"0926-9630","type":"print"},{"value":"1879-8365","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,8,7]]}}}