{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,28]],"date-time":"2025-10-28T11:04:26Z","timestamp":1761649466397,"version":"3.41.2"},"reference-count":16,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2025,3,10]],"date-time":"2025-03-10T00:00:00Z","timestamp":1741564800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Bioinform."],"DOI":"10.3389\/fbinf.2025.1545680","type":"journal-article","created":{"date-parts":[[2025,3,10]],"date-time":"2025-03-10T06:45:27Z","timestamp":1741589127000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":1,"title":["An extended miRNA repertoire in Rattus norvegicus"],"prefix":"10.3389","volume":"5","author":[{"given":"Julienne","family":"Lehmann","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ali","family":"Yazbeck","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"J\u00f6rg","family":"Hackerm\u00fcller","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sebastian","family":"Canzler","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"1965","published-online":{"date-parts":[[2025,3,10]]},"reference":[{"key":"B1","doi-asserted-by":"publisher","first-page":"350","DOI":"10.1038\/nature02871","article-title":"The functions of animal microRNAs","volume":"431","author":"Ambros","year":"2004","journal-title":"Nature"},{"key":"B2","doi-asserted-by":"publisher","first-page":"281","DOI":"10.1016\/s0092-8674(04)00045-5s0092-8674(04)00045-5","article-title":"MicroRNAs: genomics, biogenesis, mechanism, and function","volume":"116","author":"Bartel","year":"2004","journal-title":"Cell"},{"key":"B3","doi-asserted-by":"publisher","first-page":"109995","DOI":"10.1016\/j.cellsig.2021.109995","article-title":"Micro-RNA: the darkhorse of cancer","volume":"83","author":"Budakoti","year":"2021","journal-title":"Cell Signal"},{"key":"B4","doi-asserted-by":"publisher","first-page":"175","DOI":"10.1146\/annurev.cellbio.23.090506.123406cellbio.23.090506.123406","article-title":"microRNA functions","volume":"23","author":"Bushati","year":"2007","journal-title":"Annu. Rev. Cell Dev. Biol."},{"key":"B5","doi-asserted-by":"publisher","first-page":"309","DOI":"10.1007\/s00204-024-03876-2","article-title":"Evaluating the performance of multi-omics integration: a thyroid toxicity case study","volume":"99","author":"Canzler","year":"2024","journal-title":"Arch. Toxicol."},{"key":"B6","doi-asserted-by":"publisher","first-page":"100527","DOI":"10.1016\/j.xgen.2024.100527","article-title":"A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats","volume":"4","author":"de Jong","year":"2024","journal-title":"Cell Genom"},{"key":"B7","doi-asserted-by":"publisher","first-page":"111528","DOI":"10.1016\/j.biopha.2021.111528","article-title":"MicroRNA: a signature for cancer progression","volume":"138","author":"Hussen","year":"2021","journal-title":"Biomed. Pharmacother."},{"key":"B8","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1038\/nrg702","article-title":"Rat genetics: attaching physiology and pharmacology to the genome","volume":"3","author":"Jacob","year":"2002","journal-title":"Nat. Rev. Genet."},{"key":"B9","doi-asserted-by":"publisher","first-page":"D68","DOI":"10.1093\/nar\/gkt1181","article-title":"miRBase: annotating high confidence microRNAs using deep sequencing data","volume":"42","author":"Kozomara","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"B10","doi-asserted-by":"publisher","first-page":"257","DOI":"10.1186\/1471-2164-12-257","article-title":"Modeling the asymmetric evolution of a mouse and rat-specific microRNA gene cluster intron 10 of the Sfmbt2 gene","volume":"12","author":"Lehnert","year":"2011","journal-title":"BMC Genomics"},{"key":"B11","doi-asserted-by":"publisher","first-page":"2933","DOI":"10.1093\/bioinformatics\/btt509","article-title":"Infernal 1.1: 100-fold faster RNA homology searches","volume":"29","author":"Nawrocki","year":"2013","journal-title":"Bioinformatics"},{"key":"B12","doi-asserted-by":"publisher","first-page":"89","DOI":"10.1016\/j.cell.2007.06.028","article-title":"The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila","volume":"130","author":"Okamura","year":"2007","journal-title":"Cell"},{"key":"B13","unstructured":"RepeatMasker open-4.0\n          \n          \n            \n              Smit\n              A.\n            \n            \n              Hubley\n              R.\n            \n            \n              Green\n              P.\n            \n          \n          \n          2015"},{"key":"B14","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1186\/1471-2105-12-3","article-title":"R2R\u2013software to speed the depiction of aesthetic consensus RNA secondary structures","volume":"12","author":"Weinberg","year":"2011","journal-title":"BMC Bioinforma."},{"key":"B15","doi-asserted-by":"publisher","first-page":"4553","DOI":"10.1093\/bioinformatics\/btz271","article-title":"Automatic curation of large comparative animal MicroRNA datasets","volume":"35","author":"Yazbeck","year":"2019","journal-title":"Bioinformatics"},{"key":"B16","doi-asserted-by":"publisher","first-page":"1006","DOI":"10.1093\/bioinformatics\/btt730","article-title":"CrossMap: a versatile tool for coordinate conversion between genome assemblies","volume":"30","author":"Zhao","year":"2014","journal-title":"Bioinformatics"}],"container-title":["Frontiers in Bioinformatics"],"original-title":[],"link":[{"URL":"https:\/\/www.frontiersin.org\/articles\/10.3389\/fbinf.2025.1545680\/full","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,3,10]],"date-time":"2025-03-10T06:45:30Z","timestamp":1741589130000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.frontiersin.org\/articles\/10.3389\/fbinf.2025.1545680\/full"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,3,10]]},"references-count":16,"alternative-id":["10.3389\/fbinf.2025.1545680"],"URL":"https:\/\/doi.org\/10.3389\/fbinf.2025.1545680","relation":{},"ISSN":["2673-7647"],"issn-type":[{"type":"electronic","value":"2673-7647"}],"subject":[],"published":{"date-parts":[[2025,3,10]]},"article-number":"1545680"}}