{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,7,30]],"date-time":"2025-07-30T16:07:42Z","timestamp":1753891662171,"version":"3.41.2"},"reference-count":29,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2023,11,27]],"date-time":"2023-11-27T00:00:00Z","timestamp":1701043200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000025","name":"National Institute of Mental Health","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000025","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000026","name":"National Institute on Drug Abuse","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000026","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Neuroinform."],"DOI":"10.3389\/fninf.2023.1278787","type":"journal-article","created":{"date-parts":[[2023,11,27]],"date-time":"2023-11-27T06:17:55Z","timestamp":1701065875000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":0,"title":["Tissue Oxygen Depth Explorer: an interactive database for microscopic oxygen imaging data"],"prefix":"10.3389","volume":"17","author":[{"given":"Layth N.","family":"Amra","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Philipp","family":"M\u00e4chler","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Natalie","family":"Fomin-Thunemann","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"K\u0131v\u0131lc\u0131m","family":"K\u0131l\u0131\u00e7","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Payam","family":"Saisan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anna","family":"Devor","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Martin","family":"Thunemann","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"1965","published-online":{"date-parts":[[2023,11,27]]},"reference":[{"key":"B1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pbio.1002275","article-title":"Sharing neuron data: carrots, sticks, and digital records","author":"Ascoli","year":"2015","journal-title":"PLoS Biol"},{"key":"B2","doi-asserted-by":"publisher","first-page":"889","DOI":"10.1038\/nn.3426","article-title":"The cortical angiome: an interconnected vascular network with noncolumnar patterns of blood flow","volume":"16","author":"Blinder","year":"2013","journal-title":"Nat. Neurosci"},{"volume-title":"Joint Declaration of Data Citation Principles","year":"2014","key":"B3"},{"key":"B4","doi-asserted-by":"publisher","first-page":"736","DOI":"10.1016\/j.cmet.2018.12.022","article-title":"Oxyphor 2P: a high-performance probe for deep-tissue longitudinal oxygen imaging","volume":"29","author":"Esipova","year":"2019","journal-title":"Cell Metab."},{"key":"B5","doi-asserted-by":"publisher","first-page":"3663","DOI":"10.1523\/JNEUROSCI.3555-14.2015","article-title":"Quantifying the microvascular origin of BOLD-fMRI from first principles with two-photon microscopy and an oxygen-sensitive nanoprobe","volume":"35","author":"Gagnon","year":"2015","journal-title":"J. Neurosci"},{"key":"B6","doi-asserted-by":"publisher","first-page":"559","DOI":"10.1016\/0306-4522(94)90550-9","article-title":"Cytochrome oxidase activity in the auditory system of the mouse: a qualitative and quantitative histochemical study","volume":"63","author":"Gonzalez-Lima","year":"1994","journal-title":"Neuroscience"},{"key":"B7","doi-asserted-by":"publisher","first-page":"142","DOI":"10.1038\/nrn730","article-title":"What does fMRI tell us about neuronal activity?","volume":"3","author":"Heeger","year":"2002","journal-title":"Nat. Rev. Neurosci."},{"key":"B8","doi-asserted-by":"publisher","first-page":"1168","DOI":"10.1016\/j.neuron.2021.02.006","article-title":"Brain microvasculature has a common topology with local differences in geometry that match metabolic load","volume":"109","author":"Ji","year":"2021","journal-title":"Neuron"},{"key":"B9","doi-asserted-by":"publisher","first-page":"e9924","DOI":"10.7717\/peerj.9924","article-title":"Data sharing policies of journals in life, health, and physical sciences indexed in Journal Citation Reports","volume":"8","author":"Kim","year":"2020","journal-title":"PeerJ"},{"key":"B10","doi-asserted-by":"publisher","first-page":"893","DOI":"10.1038\/nm.2394","article-title":"Simultaneous two-photon imaging of oxygen and blood flow in deep cerebral vessels","volume":"17","author":"Lecoq","year":"2011","journal-title":"Nat. Med"},{"key":"B11","doi-asserted-by":"publisher","first-page":"e0173987","DOI":"10.1371\/journal.pone.0173987","article-title":"Practices of research data curation in institutional repositories: a qualitative view from repository staff","volume":"12","author":"Lee","year":"2017","journal-title":"PLoS ONE"},{"key":"B12","doi-asserted-by":"publisher","first-page":"501","DOI":"10.1177\/0271678X19831016","article-title":"Two-photon microscopic imaging of capillary red blood cell flux in mouse brain reveals vulnerability of cerebral white matter to hypoperfusion","volume":"40","author":"Li","year":"2019","journal-title":"J. Cereb. Blood Flow Metab."},{"key":"B13","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pbio.3001440","article-title":"Baseline oxygen consumption decreases with cortical depth","author":"M\u00e4chler","year":"2022","journal-title":"PLoS Biol"},{"key":"B14","unstructured":"Final NIH Policy for Data Management and Sharing Notice2020"},{"key":"B15","doi-asserted-by":"publisher","first-page":"1422","DOI":"10.1126\/science.aab2374","article-title":"Promoting an open research culture","volume":"348","author":"Nosek","year":"2015","journal-title":"Science"},{"key":"B16","unstructured":"Proposal and Award Policies and Procedures Guide2021"},{"key":"B17","doi-asserted-by":"publisher","DOI":"10.3389\/fncel.2014.00379","article-title":"Chronic cranial window with access port for repeated cellular manipulations, drug application, and electrophysiology","author":"Roome","year":"2014","journal-title":"Front. Cell Neurosci"},{"key":"B18","doi-asserted-by":"publisher","first-page":"e78362","DOI":"10.7554\/eLife.78362.sa2","article-title":"The neurodata without borders ecosystem for neurophysiological data science","volume":"11","author":"Rubel","year":"2022","journal-title":"Elife"},{"key":"B19","doi-asserted-by":"publisher","first-page":"035005","DOI":"10.1117\/1.NPh.7.3.035005","article-title":"Spatially resolved estimation of metabolic oxygen consumption from optical measurements in cortex","volume":"7","author":"Saetra","year":"2020","journal-title":"Neurophotonics"},{"key":"B20","doi-asserted-by":"publisher","first-page":"755","DOI":"10.1038\/nmeth.1490","article-title":"Two-photon high-resolution measurement of partial pressure of oxygen in cerebral vasculature and tissue","volume":"7","author":"Sakadzic","year":"2010","journal-title":"Nat. Methods"},{"key":"B21","doi-asserted-by":"crossref","unstructured":"Editorial Policies2023","DOI":"10.14295\/derb.v44.802"},{"key":"B22","doi-asserted-by":"publisher","DOI":"10.5210\/ojphi.v13i3.10878","article-title":"A virtual data repository stimulates data sharing in a consortium","author":"Siminski","year":"2021","journal-title":"Online J. Public Health Inform"},{"key":"B23","unstructured":"Research Data Policy2023"},{"key":"B24","doi-asserted-by":"publisher","first-page":"56","DOI":"10.3389\/fninf.2014.00056","article-title":"Neurovascular Network Explorer 1, 0. a database of 2-photon single-vessel diameter measurements with MATLAB\u00ae graphical user interface","volume":"8","author":"Sridhar","year":"2014","journal-title":"Front. Neuroinform."},{"key":"B25","unstructured":"Expanding Public Access to the Results of Federally Funded Research2013"},{"key":"B26","doi-asserted-by":"publisher","DOI":"10.1098\/rstb.2015.0356","article-title":"The roadmap for estimation of cell-type-specific neuronal activity from non-invasive measurements","author":"Uhlirova","year":"2016","journal-title":"Philos. Trans. R Soc. Lond. B Biol. Sci"},{"key":"B27","doi-asserted-by":"publisher","first-page":"4","DOI":"10.3389\/fninf.2017.00004","article-title":"Neurovascular Network Explorer 2.0. A database of 2-photon single-vessel diameter measurements from mouse SI cortex in response to optogenetic stimulation","volume":"11","author":"Uhlirova","year":"2017","journal-title":"Front. Neuroinform."},{"key":"B28","doi-asserted-by":"publisher","first-page":"2318","DOI":"10.1093\/cercor\/bhm259","article-title":"The microvascular system of the striate and extrastriate visual cortex of the macaque","volume":"18","author":"Weber","year":"2008","journal-title":"Cereb. Cortex"},{"key":"B29","doi-asserted-by":"publisher","first-page":"160018","DOI":"10.1038\/sdata.2016.18","article-title":"The FAIR guiding principles for scientific data management and stewardship","volume":"3","author":"Wilkinson","year":"2016","journal-title":"Sci. Data"}],"container-title":["Frontiers in Neuroinformatics"],"original-title":[],"link":[{"URL":"https:\/\/www.frontiersin.org\/articles\/10.3389\/fninf.2023.1278787\/full","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,11,27]],"date-time":"2023-11-27T06:18:03Z","timestamp":1701065883000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.frontiersin.org\/articles\/10.3389\/fninf.2023.1278787\/full"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,11,27]]},"references-count":29,"alternative-id":["10.3389\/fninf.2023.1278787"],"URL":"https:\/\/doi.org\/10.3389\/fninf.2023.1278787","relation":{},"ISSN":["1662-5196"],"issn-type":[{"type":"electronic","value":"1662-5196"}],"subject":[],"published":{"date-parts":[[2023,11,27]]},"article-number":"1278787"}}