{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,18]],"date-time":"2026-03-18T03:26:46Z","timestamp":1773804406366,"version":"3.50.1"},"reference-count":9,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2023,9,27]],"date-time":"2023-09-27T00:00:00Z","timestamp":1695772800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Artif. Intell."],"abstract":"<jats:p>This article describes our study on the alignment of two complementary knowledge graphs useful in agriculture: the thesaurus of cultivated plants in France named French Crop Usage (FCU) and the French national taxonomic repository TAXREF for fauna, flora, and fungi. FCU describes the usages of plants in agriculture: \u201c<jats:italic>tomatoes<\/jats:italic>\u201d are crops used for human food, and \u201c<jats:italic>grapevines<\/jats:italic>\u201d are crops used for human beverage. TAXREF describes biological taxa and associated scientific names: for example, a tomato species may be \u201c<jats:italic>Solanum lycopersicum<\/jats:italic>\u201d or a grapevine species may be \u201c<jats:italic>Vitis vinifera<\/jats:italic>\u201d. Both knowledge graphs contain vernacular names of plants but those names are ambiguous. Thus, a group of agricultural experts produced some mappings from FCU crops to TAXREF taxa. Moreover, new RDF properties have been defined to declare those new types of mapping relations between plant descriptions. The metadata for the mappings and the mapping set are encoded with the Simple Standard for Sharing Ontological Mappings (SSSOM), a new model which, among other qualities, offers means to report on provenance of particular interest for this study. The produced mappings are available for download in Recherche Data Gouv, the federated national platform for research data in France.<\/jats:p>","DOI":"10.3389\/frai.2023.1188036","type":"journal-article","created":{"date-parts":[[2023,9,28]],"date-time":"2023-09-28T05:37:31Z","timestamp":1695879451000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":2,"title":["Combining different points of view on plant descriptions: mapping agricultural plant roles and biological taxa"],"prefix":"10.3389","volume":"6","author":[{"given":"Florence","family":"Amardeilh","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sophie","family":"Aubin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Stephan","family":"Bernard","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sonia","family":"Bravo","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Robert","family":"Bossy","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Catherine","family":"Faron","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Franck","family":"Michel","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Juliette","family":"Raphel","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Catherine","family":"Roussey","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"1965","published-online":{"date-parts":[[2023,9,27]]},"reference":[{"key":"B1","article-title":"\u201cCrop Planning and Production Process Ontology (C3PO), a new model to assist diversified crop production,\u201d","author":"Darnala","year":"2021","journal-title":"IFOW 2021 - Integrated Food Ontology Workshop @ 12th International Conference on Biomedical Ontologies (ICBO)"},{"key":"B2","first-page":"165","article-title":"\u201cOntological representation of cultivated plants: linking botanical and agricultural usages,\u201d","author":"Darnala","year":"2022","journal-title":"MK 2022 - 1st Workshop on Modular Knowledge @ ESWC 2022 of CEUR Workshop Proceedings"},{"key":"B3","author":"Gargominy","year":"2021","journal-title":"TAXREF v15, r\u00e9f\u00e9rentiel taxonomique pour la France: m\u00e9thodologie, mise en uvre et diffusion"},{"key":"B4","doi-asserted-by":"publisher","first-page":"677","DOI":"10.1007\/s13127-021-00516-w","article-title":"Towards a global list of accepted species VI: The Catalogue of Life checklist","volume":"21","author":"Hobern","year":"2021","journal-title":"Org. Divers. Evol"},{"key":"B5","doi-asserted-by":"publisher","DOI":"10.1093\/database\/baac035","article-title":"A simple standard for sharing ontological mappings (SSSOM)","author":"Matentzoglu","year":"2022","journal-title":"Database"},{"key":"B6","article-title":"\u201cAlignement entre sources : cas d'usage des plantes cultiv\u00e9es,\u201d","volume-title":"Journ\u00e9es francophones d'Ing\u00e9nierie des Connaissances","author":"Michel","year":"2022"},{"key":"B7","unstructured":"\u201cA model to represent nomenclatural and taxonomic information as linked data. Application to the french taxonomic register, TAXREF,\u201d\n            MichelF.\n            GargominyO.\n            TercerieS.\n            Faron-ZuckerC.\n          Vienna, AustriaCEUR Workshop ProceedingsProceedings of the ISWC2017 workshop on Semantics for Biodiversity (S4BioDiv)2017"},{"key":"B8","author":"Miles","year":"2009","journal-title":"SKOS Simple Knowledge Organization System Reference. W3C Recommendation"},{"key":"B9","unstructured":"ZhangN.\n            RossmanA.\n            SeifertK.\n            BennettJ.\n            CaiY.\n            HillmanB.\n          Impacts of the international code of nomenclature for algae, fungi, and plants (melbourne code) on the scientific names of plant pathogenic fungi2013"}],"container-title":["Frontiers in Artificial Intelligence"],"original-title":[],"link":[{"URL":"https:\/\/www.frontiersin.org\/articles\/10.3389\/frai.2023.1188036\/full","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,9,28]],"date-time":"2023-09-28T05:37:37Z","timestamp":1695879457000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.frontiersin.org\/articles\/10.3389\/frai.2023.1188036\/full"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,9,27]]},"references-count":9,"alternative-id":["10.3389\/frai.2023.1188036"],"URL":"https:\/\/doi.org\/10.3389\/frai.2023.1188036","relation":{},"ISSN":["2624-8212"],"issn-type":[{"value":"2624-8212","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,9,27]]},"article-number":"1188036"}}