{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,7]],"date-time":"2026-10-07T17:48:38Z","timestamp":1791395318756,"version":"4.3.3"},"reference-count":93,"publisher":"Frontiers Media SA","content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Genet."],"DOI":"10.3389\/fgene.2015.00314","type":"journal-article","created":{"date-parts":[[2015,10,21]],"date-time":"2015-10-21T18:33:16Z","timestamp":1445452396000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":72,"title":["Prospects and challenges for the conservation of farm animal genomic resources, 2015-2025"],"prefix":"10.3389","volume":"6","author":[{"given":"Michael W.","family":"Bruford","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Catarina","family":"Ginja","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Irene","family":"Hoffmann","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"St\u00e9phane","family":"Joost","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pablo","family":"Orozco-terWengel","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Florian J.","family":"Alberto","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Andreia J.","family":"Amaral","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mario","family":"Barbato","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Filippo","family":"Biscarini","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Licia","family":"Colli","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mafalda","family":"Costa","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ino","family":"Curik","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Solange","family":"Duruz","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Maja","family":"Feren\u010dakovi\u0107","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Daniel","family":"Fischer","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Robert","family":"Fitak","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Linn F.","family":"Groeneveld","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Stephen J. G.","family":"Hall","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Olivier","family":"Hanotte","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Faiz-ul","family":"Hassan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Philippe","family":"Helsen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Laura","family":"Iacolina","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Juha","family":"Kantanen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kevin","family":"Leempoel","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Johannes A.","family":"Lenstra","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Paolo","family":"Ajmone-Marsan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Charles","family":"Masembe","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hendrik-Jan","family":"Megens","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mara","family":"Miele","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Markus","family":"Neuditschko","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ezequiel L.","family":"Nicolazzi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fran\u00e7ois","family":"Pompanon","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jutta","family":"Roosen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Natalia","family":"Sevane","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Anamarija","family":"Smetko","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Anamaria","family":"\u0160tambuk","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ian","family":"Streeter","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sylvie","family":"Stucki","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"China","family":"Supakorn","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Luis","family":"Telo Da Gama","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mich\u00e8le","family":"Tixier-Boichard","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Daniel","family":"Wegmann","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiangjiang","family":"Zhan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1965","published-online":{"date-parts":[[2015,10,21]]},"reference":[{"key":"B1","doi-asserted-by":"publisher","first-page":"337","DOI":"10.2136\/sssaj2013.07.0291","article-title":"Top-ranked priority research questions for soil science in the 21st century","volume":"78","author":"Adewopo","year":"2014","journal-title":"Soil Sci. Soc. Am. J."},{"key":"B2","doi-asserted-by":"publisher","first-page":"58","DOI":"10.1016\/j.smallrumres.2014.06.010","article-title":"The characterization of goat genetic diversity: towards a genomic approach","volume":"121","author":"Ajmone-Marsan","year":"2014","journal-title":"Small Ruminant. Res."},{"key":"B3","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1186\/s13059-015-0622-4","article-title":"Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project","volume":"16","author":"Andersson","year":"2015","journal-title":"Genome Biol."},{"key":"B4","doi-asserted-by":"publisher","first-page":"e99845","DOI":"10.1371\/journal.pone.0099845","article-title":"Data sharing reveals complexity in the westward spread of domestic animals across Neolithic Turkey","volume":"9","author":"Arbuckle","year":"2014","journal-title":"PLoS ONE"},{"issue":"109","key":"B5","doi-asserted-by":"publisher","DOI":"10.3389\/fgene.2015.00109","article-title":"SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data","volume":"6","author":"Barbato","year":"2015","journal-title":"Front. Genet"},{"key":"B6","doi-asserted-by":"publisher","first-page":"962","DOI":"10.1002\/ece3.229","article-title":"Uncontrolled admixture and loss of genetic diversity in a local Vietnamese pig breed","volume":"2","author":"Berthouly-Salazar","year":"2012","journal-title":"Ecol. Evol."},{"key":"B7","doi-asserted-by":"publisher","first-page":"64","DOI":"10.1111\/j.1365-2052.2010.02050.x","article-title":"Objectives, criteria and methods for using molecular genetic data in priority setting for conservation of animal genetic resources","volume":"41","author":"Boettcher","year":"2010","journal-title":"Anim. Genet."},{"key":"B8","doi-asserted-by":"publisher","first-page":"4392","DOI":"10.1038\/ncomms5392","article-title":"Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression","volume":"5","author":"Bosse","year":"2014b","journal-title":"Nat. Commun."},{"key":"B9","doi-asserted-by":"publisher","first-page":"4089","DOI":"10.1111\/mec.12807","article-title":"Untangling the hybrid nature of modern pig genomes: a mosaic derived from biogeographically distinct and highly divergent Sus scrofa populations","volume":"23","author":"Bosse","year":"2014a","journal-title":"Mol. Ecol."},{"key":"B10","doi-asserted-by":"publisher","first-page":"e1003100","DOI":"10.1371\/journal.pgen.1003100","article-title":"Regions of homozygosity in the porcine genome: consequence of demography and the recombination landscape","volume":"8","author":"Bosse","year":"2012","journal-title":"PLoS Genet"},{"key":"B11","doi-asserted-by":"publisher","first-page":"624","DOI":"10.1136\/vr.102503","article-title":"Assessment of inbreeding resulting from selection for scrapie resistance: a model for rare sheep breeds","volume":"175","author":"Brown","year":"2014","journal-title":"Vet. Rec."},{"key":"B12","doi-asserted-by":"publisher","first-page":"166","DOI":"10.1016\/j.livsci.2008.07.002","article-title":"Research opportunities in the field of animal genetic resources","volume":"120","author":"Cardellino","year":"2009","journal-title":"Livestock Sci."},{"key":"B13","doi-asserted-by":"publisher","first-page":"12373","DOI":"10.1073\/pnas.1221104110","article-title":"Male-specific region of the bovine Y chromosome is gene rich with a high transcriptomic activity in testis development","volume":"110","author":"Chang","year":"2013","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"B14","doi-asserted-by":"publisher","first-page":"26","DOI":"10.1016\/j.livsci.2014.05.034","article-title":"Inbreeding and runs of homozygosity: a possible solution to an old problem","volume":"166","author":"Curik","year":"2014","journal-title":"Livestock Sci."},{"key":"B15","doi-asserted-by":"publisher","first-page":"e62317","DOI":"10.1371\/journal.pone.0062137","article-title":"Genotyping-by-sequencing (GBS): a novel, efficient and cost-effective genotyping method for cattle using next-generation sequencing","volume":"8","author":"De Donato","year":"2013","journal-title":"PLoS ONE"},{"key":"B16","doi-asserted-by":"publisher","first-page":"435","DOI":"10.1111\/j.1752-4598.2012.00221.x","article-title":"Identifying key knowledge needs for evidence-based conservation of wild insect pollinators: a collaborative cross-sectoral exercise","volume":"6","author":"Dicks","year":"2013","journal-title":"Insect Conserv. Divers."},{"key":"B17","doi-asserted-by":"publisher","first-page":"e15922","DOI":"10.1371\/journal.pone.0015922","article-title":"Dual origins of dairy cattle farming - evidence from a comprehensive survey of European Y-chromosomal variation","volume":"6","author":"Edwards","year":"2011","journal-title":"PLoS ONE"},{"key":"B18","doi-asserted-by":"publisher","first-page":"67","DOI":"10.5311\/josis.2014.8.182","article-title":"The open source dynamics in geospatial research and education","volume":"8","author":"Ertz","year":"2014","journal-title":"J. Spatial Inf. Sci."},{"key":"B19","doi-asserted-by":"publisher","first-page":"475","DOI":"10.1111\/j.1365-2052.2006.01511.x","article-title":"Marker-assisted conservation of European cattle breeds: an evaluation","volume":"37","author":"European Cattle Genetic Diversity Consortium","year":"2006","journal-title":"Anim. Genet."},{"key":"B20","author":"FAO","year":"2007a","journal-title":"The Global Plan of Action for Animal Genetic Resources and the Interlaken Declaration"},{"key":"B21","author":"FAO","year":"2007b","journal-title":"The State of the World's Animal Genetic Resources for Food and Agriculture"},{"key":"B22","author":"FAO","year":"2009","journal-title":"Report of the FAO\/WAAP Workshop on Production Environment Descriptors for Animal Genetic Resources"},{"key":"B23","volume-title":"Molecular Genetic Characterization of Animal Genetic Resources.","author":"FAO","year":"2011"},{"key":"B24","volume-title":"Phenotypic Characterization of Animal Genetic Resources","author":"FAO","year":"2012a"},{"key":"B25","article-title":"Targets and indicators for animal genetic resource","author":"FAO","year":"2012b","journal-title":"Seventh Session of the Intergovernmental Technical Working Group on Animal Genetic Resources for Food And Agriculture, (CGRFA\/WG-AnGR-7\/12\/7)"},{"key":"B26","article-title":"Status and trends of animal genetic resources \u2013 2014","author":"FAO","year":"2015a","journal-title":"Fifteenth Regular Session of the Commission on Genetic Resources for Food and Agriculture, (CGRFA-15\/15\/Inf.18)"},{"key":"B27","author":"FAO","year":"2015b","journal-title":"Draft Second Report on the State of the World's Animal Genetic Resources for Food and Agriculture (Part 3), Commission on Genetic Resources for Food and Agriculture, CGRFA-15\/15\/Inf.17.2"},{"key":"B28","article-title":"Synthesis progress report on the implementation of the Global Plan of Action for Animal Genetic Resources \u2013 2014","author":"FAO","year":"2015c","journal-title":"Fifteenth Regular Session of the Commission on Genetic Resources for Food and Agriculture, (CGRFA-15\/15\/Inf.19)"},{"key":"B29","author":"FAO","year":"2015d","journal-title":"Draft Second Report on the State of the World's Animal Genetic Resources for Food and Agriculture (Part 1 and 2), Commission on Genetic Resources for Food and Agriculture, CGRFA-15\/15\/Inf.17.1"},{"key":"B30","doi-asserted-by":"publisher","first-page":"1029","DOI":"10.5424\/sjar\/2014124-6173","article-title":"Genetic relationships between six eastern Pyrenean sheep breeds assessed using microsatellites","volume":"12","author":"Ferrando","year":"2014","journal-title":"Spanish J. Agric. Res"},{"key":"B31","doi-asserted-by":"publisher","first-page":"188","DOI":"10.1038\/ng.3197","article-title":"Evolution of Tibetan wild boars","volume":"47","author":"Frantz","year":"2015","journal-title":"Nat. Genet."},{"key":"B32","doi-asserted-by":"publisher","first-page":"3211","DOI":"10.1038\/ncomms4211","article-title":"Long livestock farming history and human landscape shaping revealed by lake sediment DNA","volume":"5","author":"Giguet-Covex","year":"2014","journal-title":"Nat. Commun"},{"key":"B33","doi-asserted-by":"publisher","first-page":"35","DOI":"10.1186\/1297-9686-45-35","article-title":"Analysis of conservation priorities of Iberoamerican cattle based on autosomal microsatellite markers","volume":"45","author":"Ginja","year":"2013","journal-title":"Genet. Sel. Evol."},{"key":"B34","doi-asserted-by":"publisher","first-page":"128","DOI":"10.1111\/j.1365-2052.2009.01976.x","article-title":"Origins and genetic diversity of New World Creole cattle: inferences from mitochondrial and Y chromosome polymorphisms","volume":"41","author":"Ginja","year":"2010","journal-title":"Anim. Genet"},{"key":"B35","doi-asserted-by":"publisher","first-page":"381","DOI":"10.1038\/nrg2575","article-title":"Mapping genes for complex traits in domestic animals and their use in breeding programs","volume":"10","author":"Goddard","year":"2009","journal-title":"Nat. Rev. Genet."},{"key":"B36","doi-asserted-by":"publisher","first-page":"2345","DOI":"10.1098\/rspb.2005.3243","article-title":"Cattle domestication in the Near East was followed by hybridization with aurochs bulls in Europe","volume":"272","author":"G\u00f6therstr\u00f6m","year":"2005","journal-title":"Proc. R. Soc. Lond. B"},{"key":"B37","doi-asserted-by":"publisher","first-page":"6","DOI":"10.1111\/j.1365-2052.2010.02038.x","article-title":"Genetic diversity in livestock breeds","volume":"41","author":"Groeneveld","year":"2010","journal-title":"Anim. Genet."},{"key":"B38","doi-asserted-by":"publisher","first-page":"934","DOI":"10.1186\/1471-2164-15-934","article-title":"Identification and functional characterization of copy number variation in diverse chicken breeds","volume":"15","author":"Han","year":"2014","journal-title":"BMC Genomics"},{"key":"B39","doi-asserted-by":"publisher","first-page":"259","DOI":"10.1111\/age.12001","article-title":"Farm-by-farm analysis of microsatellite, mtDNA and SNP genotype data reveals inbreeding and crossbreeding as threats to the survival of a native Spanish pig breed","volume":"44","author":"Herrero-Medrano","year":"2013","journal-title":"Anim. Genet."},{"key":"B40","doi-asserted-by":"publisher","first-page":"601","DOI":"10.1186\/1471-2164-15-601","article-title":"Whole-genome sequence analysis reveals differences in population management and selection of European low-input pig breeds","volume":"15","author":"Herrero-Medrano","year":"2014","journal-title":"BMC Genomics"},{"key":"B41","doi-asserted-by":"publisher","first-page":"32","DOI":"10.1111\/j.1365-2052.2010.02043.x","article-title":"Climate change and the characterization, breeding and conservation of animal genetic resources","volume":"41","author":"Hoffmann","year":"2010","journal-title":"Anim. Genet."},{"key":"B42","doi-asserted-by":"publisher","first-page":"570","DOI":"10.1111\/j.1365-2052.2010.02046.x","article-title":"A genome-wide association study using selective DNA pooling identifies candidate markers for fertility in Holstein cattle","volume":"41","author":"Huang","year":"2010","journal-title":"Anim. Genet"},{"key":"B43","doi-asserted-by":"publisher","first-page":"617","DOI":"10.1007\/s12571-013-0294-4","article-title":"Priority research questions for the UK food system","volume":"5","author":"Ingram","year":"2013","journal-title":"Food Secur."},{"key":"B44","first-page":"23","article-title":"Epig\u00e9n\u00e9tique et construction du ph\u00e9notype, un enjeu pour les productions animales? (Epigenetics and phenotype construction, a challenge for livestock production?)","volume-title":"Robustesse, Rusticit\u00e9, Flexibilit\u00e9, Plasticit\u00e9, R\u00e9silience\u2026les Nouveaux Crit\u00e8res de Qualit\u00e9 des Animaux et des Syst\u00e8mes D'\u00e9levage","author":"Jammes","year":"2010"},{"key":"B45","doi-asserted-by":"publisher","first-page":"3433","DOI":"10.1002\/jsfa.6351","article-title":"Agricultural biodiversity as a link between traditional food systems and contemporary development, social integrity and ecological health","volume":"93","author":"Johns","year":"2013","journal-title":"J. Sci. Food Agric."},{"key":"B46","doi-asserted-by":"publisher","first-page":"3455","DOI":"10.1111\/evo.12237","article-title":"Integrating landscape genomics and spatially explicit explicit approaches to detect loci under selection in clinal populations","volume":"67","author":"Jones","year":"2013","journal-title":"Evolution"},{"key":"B47","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1111\/j.1365-2052.2010.02037.x","article-title":"Integrating geo-referenced multiscale and multidisciplinary data for the management of biodiversity in livestock genetic resources","volume":"41","author":"Joost","year":"2010","journal-title":"Anim. Genet"},{"key":"B48","doi-asserted-by":"publisher","first-page":"232","DOI":"10.1016\/j.livsci.2014.04.028","article-title":"Genomics to systems biology in animal and veterinary sciences: progress, lessons and opportunities","volume":"166","author":"Kadarmideen","year":"2014","journal-title":"Livestock Sci."},{"key":"B49","doi-asserted-by":"publisher","first-page":"325","DOI":"10.1111\/age.12011","article-title":"Genetic diversity and investigation of polledness in divergent goat populations using 52088 SNPs","volume":"44","author":"Kijas","year":"2013","journal-title":"Anim. Genet."},{"issue":"38","key":"B50","doi-asserted-by":"publisher","DOI":"10.3389\/fgene.2015.00038","article-title":"What can livestock breeders learn from conservation genetics and vice versa?","volume":"6","author":"Kristensen","year":"2015","journal-title":"Front. Genet"},{"key":"B51","doi-asserted-by":"publisher","first-page":"7686","DOI":"10.1073\/pnas.0912264107","article-title":"Patterns of East Asian pig domestication, migration, and turnover revealed by modern and ancient DNA","volume":"107","author":"Larson","year":"2010","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"B52","doi-asserted-by":"publisher","first-page":"519","DOI":"10.1186\/1471-2164-14-519","article-title":"Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity","volume":"14","author":"Lee","year":"2013","journal-title":"BMC Genomics"},{"key":"B53","doi-asserted-by":"publisher","first-page":"483","DOI":"10.1111\/j.1365-2052.2011.02309.x","article-title":"Molecular tools and analytical approaches for the characterization of farm animal genetic diversity","volume":"43","author":"Lenstra","year":"2012","journal-title":"Anim. Genet"},{"key":"B54","doi-asserted-by":"publisher","first-page":"493","DOI":"10.1038\/nature10231","article-title":"Inference of human population history from individual whole-genome sequences","volume":"475","author":"Li","year":"2011","journal-title":"Nature"},{"key":"B55","doi-asserted-by":"publisher","first-page":"486","DOI":"10.1016\/j.agsy.2010.05.002","article-title":"A participatory, farming systems approach to improving Bali cattle production in the smallholder crop\u2013livestock systems of Eastern Indonesia","volume":"103","author":"Lisson","year":"2010","journal-title":"Agric. Syst."},{"key":"B56","doi-asserted-by":"publisher","first-page":"93","DOI":"10.1186\/1471-2156-11-93","article-title":"DNA sequence polymorphisms in a panel of eight candidate bovine imprinted genes and their association with performance traits in Irish Holstein-Friesian cattle","volume":"11","author":"Magee","year":"2011","journal-title":"BMC Genet."},{"key":"B57","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1111\/age.12168","article-title":"Imprinted loci in domestic livestock species as epigenomic targets for artificial selection of complex traits","volume":"45","author":"Magee","year":"2014","journal-title":"Anim. Genet."},{"key":"B58","doi-asserted-by":"publisher","first-page":"e5350","DOI":"10.1371\/journal.pone.0005350","article-title":"Development and characterization of a high density SNP genotyping assay for cattle","volume":"4","author":"Matukumalli","year":"2009","journal-title":"PLoS ONE"},{"key":"B59","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1111\/j.1365-2052.2008.01799.x","article-title":"Re-sequencing regions of the ovine Y chromosome in domestic and wild sheep reveals novel paternal haplotypes","volume":"40","author":"Meadows","year":"2008","journal-title":"Anim. Genet"},{"key":"B60","doi-asserted-by":"publisher","first-page":"S6","DOI":"10.1186\/1471-2164-15-S7-S6","article-title":"Linkage disequilibrium and haplotype block structure in a composite beef cattle breed","volume":"15","author":"Mokry","year":"2014","journal-title":"BMC Genomics"},{"key":"B61","doi-asserted-by":"publisher","first-page":"283","DOI":"10.1186\/s12864-015-1497-1","article-title":"SNPchiMp v.3: integrating and standardizing single nucleotide polymorphism data for livestock species","volume":"16","author":"Nicolazzi","year":"2015","journal-title":"BMC Genomics"},{"key":"B62","doi-asserted-by":"publisher","first-page":"867","DOI":"10.1038\/nrg3322","article-title":"Adaptive evolution: evaluating empirical support for theoretical predictions","volume":"13","author":"Olson-Manning","year":"2012","journal-title":"Nat. Rev. Genet."},{"key":"B63","doi-asserted-by":"publisher","first-page":"74","DOI":"10.1038\/nature12323","article-title":"Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse","volume":"499","author":"Orlando","year":"2013","journal-title":"Nature"},{"key":"B64","doi-asserted-by":"publisher","first-page":"3941","DOI":"10.1111\/mec.12863","article-title":"Mixed signals from hybrid genomes","volume":"23","author":"Orozco-terWengel","year":"2014","journal-title":"Mol. Ecol."},{"key":"B65","doi-asserted-by":"publisher","first-page":"e10746","DOI":"10.1371\/journal.pone.0010746","article-title":"An environment-wide association study (EWAS) on type 2 diabetes mellitus","volume":"5","author":"Patel","year":"2010","journal-title":"PLoS ONE"},{"key":"B66","doi-asserted-by":"publisher","first-page":"2765","DOI":"10.1093\/molbev\/msp200","article-title":"Tracing the history of goat pastoralism: new clues from mitochondrial and Y chromosome DNA in North Africa","volume":"26","author":"Pereira","year":"2009","journal-title":"Mol. Biol. Evol"},{"key":"B67","doi-asserted-by":"publisher","first-page":"792","DOI":"10.1071\/AN10073","article-title":"Effect of SNP origin on analyses of genetic diversity in cattle","volume":"50","author":"Porto Neto","year":"2010","journal-title":"Anim. Prod. Sci"},{"key":"B68","doi-asserted-by":"publisher","first-page":"219","DOI":"10.3763\/ijas.2010.0534","article-title":"Top 100 questions of importance to the future of global agriculture","volume":"8","author":"Pretty","year":"2010","journal-title":"Int. J. Agric. Sustainability"},{"key":"B69","doi-asserted-by":"publisher","first-page":"71","DOI":"10.1186\/s12711-014-0071-7","article-title":"Identification of genomic regions associated with inbreeding depression in Holstein and Jersey dairy cattle","volume":"46","author":"Pryce","year":"2014","journal-title":"Genet. Sel. Evol."},{"key":"B70","doi-asserted-by":"publisher","first-page":"70","DOI":"10.1186\/1471-2156-13-70","article-title":"Runs of homozygosity and population history in cattle","volume":"13","author":"Purfield","year":"2012","journal-title":"BMC Genet."},{"key":"B71","doi-asserted-by":"publisher","first-page":"946","DOI":"10.1038\/ng.2343","article-title":"The yak genome and adaptation to life at high altitude","volume":"44","author":"Qiu","year":"2012","journal-title":"Nat. Genet."},{"key":"B72","doi-asserted-by":"publisher","first-page":"2061","DOI":"10.1093\/molbev\/msp118","article-title":"Integrating Y-chromosome, mitochondrial, and autosomal data to analyze the origin of pig breeds","volume":"26","author":"Ram\u00edrez","year":"2009","journal-title":"Mol. Biol. Evol"},{"key":"B73","doi-asserted-by":"publisher","first-page":"117","DOI":"10.1016\/j.prevetmed.2014.10.014","article-title":"Participatory evaluation of chicken health and production constraints in Ethiopia","volume":"118","author":"Sambo","year":"2015","journal-title":"Prevent. Vet. Med."},{"key":"B74","doi-asserted-by":"publisher","first-page":"129","DOI":"10.1017\/S1742170512000312","article-title":"Diversification and ecosystem services for conservation agriculture: outcomes from pastures and integrated crop-livestock systems","volume":"26","author":"Sanderson","year":"2013","journal-title":"Renew. Agric. Food Syst."},{"key":"B75","doi-asserted-by":"publisher","first-page":"919","DOI":"10.1101\/005348","article-title":"Inferring human population size and separation history from multiple genome sequences","volume":"46","author":"Schiffels","year":"2014","journal-title":"Nat. Genet."},{"key":"B76","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1111\/jbg.12066","article-title":"Estimation of inbreeding and effective population size of full-blood wagyu cattle registered with the American Wagyu Cattle Association","volume":"131","author":"Scraggs","year":"2014","journal-title":"J. Anim. Breed. Genet."},{"key":"B77","doi-asserted-by":"publisher","first-page":"377","DOI":"10.1016\/S0921-8009(03)00092-2","article-title":"An approach to the optimal allocation of conservation funds to minimize loss of genetic diversity between livestock breeds","volume":"45","author":"Simianer","year":"2003","journal-title":"Ecol. Econ."},{"key":"B78","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.tree.2013.11.004x","article-title":"A horizon scan of global conservation issues for 2014","volume":"29","author":"Sutherland","year":"2014","journal-title":"Trends Ecol. Evol."},{"key":"B79","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.tree.2014.11.002","article-title":"A horizon scan of global conservation issues for 2015","volume":"30","author":"Sutherland","year":"2015","journal-title":"Trends Ecol. Evol."},{"key":"B80","doi-asserted-by":"publisher","first-page":"523","DOI":"10.1016\/j.tree.2009.04.008","article-title":"The need for environmental horizon scanning","volume":"24","author":"Sutherland","year":"2009","journal-title":"Trends Ecol. Evol."},{"key":"B81","doi-asserted-by":"publisher","first-page":"752","DOI":"10.1098\/rsbl.2008.0342","article-title":"Temporal fluctuations of Y-chromosomal variation in Bos taurus","volume":"4","author":"Svensson","year":"2008","journal-title":"Biol. Lett"},{"key":"B82","doi-asserted-by":"publisher","first-page":"5268","DOI":"10.1002\/ece3.888","article-title":"Smartphones in ecology and evolution: a guide for the app-rehensive","volume":"3","author":"Teacher","year":"2013","journal-title":"Ecol. Evol."},{"key":"B83","doi-asserted-by":"publisher","first-page":"20130379","DOI":"10.1098\/rstb.2013.0379","article-title":"Paging through history: parchment as a reservoir of ancient DNA for next generation sequencing","volume":"370","author":"Teasdale","year":"2015","journal-title":"Philos. Trans. R. Soc. Lond. B"},{"key":"B84","doi-asserted-by":"publisher","first-page":"168","DOI":"10.1038\/461168a","article-title":"Prepublication data sharing","volume":"461","author":"The Toronto International Data Release Workshop Authors","year":"2009","journal-title":"Nature"},{"key":"B85","doi-asserted-by":"publisher","first-page":"241","DOI":"10.1126\/science.1257484","article-title":"A mid-term analysis of progress toward international biodiversity targets","volume":"346","author":"Tittensor","year":"2014","journal-title":"Science"},{"key":"B86","doi-asserted-by":"publisher","first-page":"48","DOI":"10.1016\/j.livsci.2014.04.020","article-title":"Genomics applied to management strategies in conservation programmes","volume":"166","author":"Toro","year":"2014","journal-title":"Livestock Sci."},{"key":"B87","doi-asserted-by":"publisher","first-page":"359","DOI":"10.1146\/annurev.genet.39.110304.095751","article-title":"A mitochondrial paradigm of metabolic and degenerative disease, aging and cancer: a dawn for evolutionary medicine","volume":"39","author":"Wallace","year":"2005","journal-title":"Ann. Rev. Genet."},{"key":"B88","doi-asserted-by":"publisher","first-page":"e60015","DOI":"10.1371\/journal.pone.0060015","article-title":"Identification of genetic variation on the Horse Y chromosome and the tracing of male founder lineages in modern breeds","volume":"8","author":"Wallner","year":"2013","journal-title":"PLoS ONE"},{"key":"B89","doi-asserted-by":"publisher","first-page":"363","DOI":"10.2307\/2118476","article-title":"On diversity","volume":"CVII","author":"Weitzman","year":"1992","journal-title":"Q. J. Econ"},{"key":"B90","doi-asserted-by":"publisher","first-page":"5188","DOI":"10.1038\/ncomms6188","article-title":"Camelid genomes reveal evolution and adaptation to desert environments","volume":"5","author":"Wu","year":"2014","journal-title":"Nat. Commun."},{"key":"B91","doi-asserted-by":"publisher","first-page":"113","DOI":"10.1186\/1471-2164-15-113","article-title":"Copy number variations of the extensively amplified Y-linked genes, HSFY and ZNF280BY, in cattle and their association with male reproductive traits in Holstein bulls","volume":"15","author":"Yue","year":"2014","journal-title":"BMC Genomics"},{"key":"B92","doi-asserted-by":"publisher","first-page":"88","DOI":"10.1186\/s12863-015-0227-7","article-title":"Estimation of inbreeding using pedigree, 50k SNP chip genotypes and full sequence data in three cattle breeds","volume":"16","author":"Zhang","year":"2015","journal-title":"BMC Genetics"},{"key":"B93","doi-asserted-by":"publisher","first-page":"137","DOI":"10.1146\/annurev-environ-040309-113840","article-title":"Biological diversity in agriculture and global change","volume":"35","author":"Zimmerer","year":"2010","journal-title":"Annu. Rev. Environ. Resour."}],"container-title":["Frontiers in Genetics"],"original-title":[],"deposited":{"date-parts":[[2015,11,4]],"date-time":"2015-11-04T16:07:30Z","timestamp":1446653250000},"score":1,"resource":{"primary":{"URL":"http:\/\/journal.frontiersin.org\/Article\/10.3389\/fgene.2015.00314\/abstract"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,10,21]]},"references-count":93,"URL":"https:\/\/doi.org\/10.3389\/fgene.2015.00314","relation":{},"ISSN":["1664-8021"],"issn-type":[{"value":"1664-8021","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,10,21]]}}}