{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,27]],"date-time":"2025-10-27T16:18:10Z","timestamp":1761581890045,"version":"3.41.2"},"reference-count":42,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2019,10,31]],"date-time":"2019-10-31T00:00:00Z","timestamp":1572480000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002858","name":"China Postdoctoral Science Foundation","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100002858","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Genet."],"DOI":"10.3389\/fgene.2019.01093","type":"journal-article","created":{"date-parts":[[2019,10,31]],"date-time":"2019-10-31T04:48:40Z","timestamp":1572497320000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":4,"title":["Genotyping and Phylogenetic Position of Trichinella spiralis Isolates from Different Geographical Locations in China"],"prefix":"10.3389","volume":"10","author":[{"given":"Xi","family":"Zhang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lu Lu","family":"Han","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xiu","family":"Hong","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Peng","family":"Jiang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yui Fei","family":"Niu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Zhong Quan","family":"Wang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jing","family":"Cui","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"1965","published-online":{"date-parts":[[2019,10,31]]},"reference":[{"key":"B1","doi-asserted-by":"publisher","first-page":"359","DOI":"10.1007\/s00122-006-0440-x","article-title":"Identification, characterization and utilization of EST-derived genic microsatellite markers for genome analyses of coffee and related species","volume":"114","author":"Aggarwal","year":"2007","journal-title":"Theor. Appl. Genet."},{"key":"B2","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.actatropica.2011.02.005","article-title":"The epidemiology of human trichinellosis in China during 2004\u20132009","volume":"118","author":"Cui","year":"2011","journal-title":"Acta Trop."},{"key":"B3","doi-asserted-by":"publisher","first-page":"772","DOI":"10.1038\/nmeth.2109","article-title":"jModelTest 2: more models, new heuristics and parallel computing","volume":"9","author":"Darriba","year":"2012","journal-title":"Nat. Methods"},{"key":"B4","doi-asserted-by":"publisher","first-page":"1969","DOI":"10.1093\/molbev\/mss075","article-title":"Bayesian phylogenetics with BEAUti and the BEAST 1.7","volume":"29","author":"Drummond","year":"2012","journal-title":"Mol. Biol. Evol."},{"key":"B5","doi-asserted-by":"publisher","first-page":"359","DOI":"10.1007\/s12686-011-9548-7","article-title":"STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method","volume":"4","author":"Earl","year":"2012","journal-title":"Conserv. Genet. Resour."},{"key":"B6","doi-asserted-by":"publisher","first-page":"128","DOI":"10.1016\/j.vetpar.2016.10.023","article-title":"Molecular characterization of Trichinella species from wild animals in Israel","volume":"231","author":"Erster","year":"2016","journal-title":"Vet. Parasitol."},{"key":"B7","doi-asserted-by":"publisher","first-page":"564","DOI":"10.1111\/j.1755-0998.2010.02847.x","article-title":"Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows","volume":"10","author":"Excoffier","year":"2010","journal-title":"Mol. Ecol. Resour."},{"key":"B8","doi-asserted-by":"crossref","first-page":"1567","DOI":"10.1093\/genetics\/164.4.1567","article-title":"Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies","volume":"164","author":"Falush","year":"2003","journal-title":"Genetics"},{"key":"B9","doi-asserted-by":"publisher","first-page":"214","DOI":"10.1016\/j.vetpar.2008.10.033","article-title":"Species identification of Trichinella isolates from China","volume":"159","author":"Fu","year":"2009","journal-title":"Vet. Parasitol."},{"key":"B10","doi-asserted-by":"publisher","first-page":"393","DOI":"10.1016\/S0304-4017(00)00354-X","article-title":"International Commission on Trichinellosis: recommendations on methods for the control of Trichinella in domestic and wild animals intended for human consumption","volume":"93","author":"Gamble","year":"2000","journal-title":"Vet. Parasitol."},{"key":"B11","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.vetpar.2017.08.021","article-title":"Trichinella spiralis a new alien parasite in Italy and the increased risk of infection for domestic and wild swine","volume":"246","author":"Garbarino","year":"2017","journal-title":"Vet. Parasitol."},{"key":"B12","doi-asserted-by":"publisher","first-page":"23","DOI":"10.1016\/j.vetpar.2005.05.021","article-title":"Genetic analysis of Trichinella populations by \u2018cold\u2019 single-strand conformation polymorphism analysis","volume":"132","author":"Gasser","year":"2005","journal-title":"Vet. Parasitol."},{"key":"B13","doi-asserted-by":"publisher","first-page":"1533","DOI":"10.1111\/j.1365-2699.2008.01951.x","article-title":"A macroevolutionary mosaic: episodic host-switching, geographical colonization and diversification in complex host\u2013parasite systems","volume":"35","author":"Hoberg","year":"2008","journal-title":"J. Biogeogr."},{"key":"B14","doi-asserted-by":"publisher","first-page":"1322","DOI":"10.1111\/j.1755-0998.2009.02591.x","article-title":"Inferring weak population structure with the assistance of sample group information","volume":"9","author":"Hubisz","year":"2009","journal-title":"Mol. Ecol. Resour."},{"key":"B15","doi-asserted-by":"publisher","first-page":"1801","DOI":"10.1093\/bioinformatics\/btm233","article-title":"CLUMPP: A cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure","volume":"23","author":"Jakobsson","year":"2007","journal-title":"Bioinformatics"},{"key":"B16","doi-asserted-by":"publisher","DOI":"10.1038\/ncomms10513","article-title":"Phylogenomic and biogeographic reconstruction of the Trichinella complex","volume":"7","author":"Korhonen","year":"2016","journal-title":"Nat. Commun."},{"key":"B17","doi-asserted-by":"publisher","first-page":"234","DOI":"10.1016\/j.vetpar.2008.06.003","article-title":"Molecular evidence for a novel encapsulated genotype of Trichinella from Patagonia, Argentina","volume":"156","author":"Krivokapich","year":"2008","journal-title":"Vet. Parasitol."},{"key":"B18","doi-asserted-by":"publisher","first-page":"543","DOI":"10.1016\/j.ijpara.2017.12.007","article-title":"Rare but evolutionarily consequential outcrossing in a highly inbred zoonotic parasite","volume":"48","author":"La Rosa","year":"2018","journal-title":"Int. J. Parasitol."},{"key":"B19","doi-asserted-by":"publisher","first-page":"369","DOI":"10.1016\/j.meegid.2012.01.008","article-title":"Development of a single larva microsatellite analysis to investigate the population structure of Trichinella spiralis","volume":"12","author":"La Rosa","year":"2012","journal-title":"Infect. Genet. Evol."},{"key":"B20","doi-asserted-by":"publisher","first-page":"641","DOI":"10.2307\/3283538","article-title":"Allozyme analysis of Trichinella isolates from various host species and geographic regions","volume":"78","author":"La Rosa","year":"1992","journal-title":"J. Parasitol."},{"key":"B21","first-page":"1880","article-title":"Trichina spiralis in Chinese pork","author":"Manson","year":"1881"},{"key":"B22","doi-asserted-by":"publisher","first-page":"1073","DOI":"10.1016\/j.ijpara.2014.08.010","article-title":"Mitochondrial genomes of Trichinella species and genotypes \u2013 a basis for diagnosis, and systematic and epidemiological explorations","volume":"44","author":"Mohandas","year":"2014","journal-title":"Int. J. Parasitol."},{"key":"B23","doi-asserted-by":"publisher","first-page":"2194","DOI":"10.3201\/eid1712.110896","article-title":"Worldwide occurrence and impact of human trichinellosis, 1986-2009","volume":"17","author":"Murrell","year":"2011","journal-title":"Emerg. Infect. Dis."},{"key":"B24","doi-asserted-by":"publisher","first-page":"4","DOI":"10.1016\/j.pt.2013.11.001","article-title":"Searching for Trichinella: not all pigs are created equal","volume":"30","author":"Pozio","year":"2014","journal-title":"Trends Parasitol."},{"key":"B25","doi-asserted-by":"publisher","first-page":"606","DOI":"10.1016\/j.meegid.2009.03.003","article-title":"Molecular taxonomy, phylogeny and biogeography of nematodes belonging to the Trichinella genus","volume":"9","author":"Pozio","year":"2009","journal-title":"Infect. Genet. Evol."},{"key":"B26","doi-asserted-by":"publisher","first-page":"686","DOI":"10.1128\/MMBR.00011-08","article-title":"Comparative genomics and molecular dynamics of DNA repeats in eukaryotes","volume":"72","author":"Richard","year":"2008","journal-title":"Microbiol. Mol. Biol. Rev."},{"key":"B27","doi-asserted-by":"publisher","first-page":"539","DOI":"10.1093\/sysbio\/sys029","article-title":"MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space","volume":"61","author":"Ronquist","year":"2012","journal-title":"Syst. Biol."},{"key":"B28","doi-asserted-by":"publisher","first-page":"799","DOI":"10.1016\/j.meegid.2008.07.008","article-title":"Human dispersal of Trichinella spiralis in domesticated pigs","volume":"8","author":"Rosenthal","year":"2008","journal-title":"Infect. Genet. Evol."},{"key":"B29","doi-asserted-by":"publisher","first-page":"103","DOI":"10.1111\/j.1471-8286.2007.01931.x","article-title":"Genepop\u2019007: a complete re-implementation of the genepop software for Windows and Linux","volume":"8","author":"Rousset","year":"2008","journal-title":"Mol. Ecol. Resour."},{"key":"B30","doi-asserted-by":"publisher","first-page":"1375","DOI":"10.1111\/1755-0998.12422","article-title":"An informational diversity framework, illustrated with sexually deceptive orchids in early stages of speciation","volume":"15","author":"Smouse","year":"2015","journal-title":"Mol. Ecol. Resour."},{"key":"B31","doi-asserted-by":"publisher","first-page":"484","DOI":"10.1007\/s00436-015-4709-3","article-title":"Early serodiagnosis of trichinellosis by ELISA using excretory-secretory antigens of Trichinella spiralis adult worms","volume":"8","author":"Sun","year":"2015","journal-title":"Parasit. Vectors"},{"key":"B32","doi-asserted-by":"publisher","first-page":"2725","DOI":"10.1093\/molbev\/mst197","article-title":"MEGA6: Molecular Evolutionary Genetics Analysis version 6.0","volume":"30","author":"Tamura","year":"2013","journal-title":"Mol. Biol. Evol."},{"key":"B33","doi-asserted-by":"publisher","first-page":"753","DOI":"10.1007\/s00436-011-2549-3","article-title":"Molecular identification and phylogenetic analysis of Trichinella isolates from different provinces in mainland China","volume":"110","author":"Wang","year":"2012","journal-title":"Parasitol. Res."},{"key":"B34","doi-asserted-by":"publisher","first-page":"304","DOI":"10.1016\/j.meegid.2010.01.003","article-title":"Deep resequencing of Trichinella spiralis reveals previously un-described single nucleotide polymorphisms and intra-isolate variation within the mitochondrial genome","volume":"10","author":"Webb","year":"2010","journal-title":"Infect. Genet. Evol."},{"key":"B35","doi-asserted-by":"publisher","first-page":"291","DOI":"10.1006\/mcpr.2000.0316","article-title":"DNA fingerprints of Trichinella as revealed by restriction fragment length polymorphism and single-strand conformational polymorphism (RFLP-SSCP)","volume":"14","author":"Wu","year":"2000","journal-title":"Mol. Cell. Probes"},{"key":"B36","doi-asserted-by":"publisher","first-page":"1355","DOI":"10.1007\/s00436-008-1141-y","article-title":"Analysis of cytochrome c-oxidase (COI) gene of mitochondrial DNA from the Trichinella spp. in China","volume":"103","author":"Yang","year":"2008","journal-title":"Parasitol. Res."},{"key":"B37","doi-asserted-by":"publisher","first-page":"7354","DOI":"10.1073\/pnas.0602466103","article-title":"Post-miocene expansion, colonization, and host switching drove speciation among extant nematodes of the archaic genus Trichinella","volume":"103","author":"Zarlenga","year":"2006","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"B38","doi-asserted-by":"publisher","first-page":"8","DOI":"10.1016\/j.vetpar.2016.07.003","article-title":"Trichinella spiralis: adaptation and parasitism","volume":"231","author":"Zarlenga","year":"2016","journal-title":"Vet. Parasitol."},{"key":"B39","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1016\/j.ympev.2017.06.003","article-title":"Comparative mitochondrial genomics among Spirometra (Cestoda: Diphyllobothriidae) and the molecular phylogeny of related tapeworms","volume":"117","author":"Zhang","year":"2017","journal-title":"Mol. Phylogenet. Evol."},{"key":"B40","first-page":"561","article-title":"The divergence pattern of Trichinella spiralis isolates from China revealed by mitochondrial and ribosomal markers","volume":"33","author":"Zhang","year":"2016","journal-title":"Trop. Biomed."},{"key":"B41","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0006165","article-title":"Population structure analysis of the neglected parasite Thelazia callipaeda revealed high genetic diversity in Eastern Asia isolates","volume":"12","author":"Zhang","year":"2018","journal-title":"PloS Negl. Trop. Dis."},{"key":"B42","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.meegid.2015.07.025","article-title":"Characterisation of the relationship between Spirometra erinaceieuropaei and Diphyllobothrium species using complete cytb and cox1 genes","volume":"35","author":"Zhang","year":"2015","journal-title":"Infect. Genet. Evol."}],"container-title":["Frontiers in Genetics"],"original-title":[],"link":[{"URL":"https:\/\/www.frontiersin.org\/article\/10.3389\/fgene.2019.01093\/full","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,10,3]],"date-time":"2022-10-03T02:14:10Z","timestamp":1664763250000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.frontiersin.org\/article\/10.3389\/fgene.2019.01093\/full"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,10,31]]},"references-count":42,"alternative-id":["10.3389\/fgene.2019.01093"],"URL":"https:\/\/doi.org\/10.3389\/fgene.2019.01093","relation":{},"ISSN":["1664-8021"],"issn-type":[{"type":"electronic","value":"1664-8021"}],"subject":[],"published":{"date-parts":[[2019,10,31]]},"article-number":"1093"}}