{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,11]],"date-time":"2026-02-11T10:04:22Z","timestamp":1770804262631,"version":"3.50.0"},"reference-count":64,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2018,4,30]],"date-time":"2018-04-30T00:00:00Z","timestamp":1525046400000},"content-version":"unspecified","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100003725","name":"National Research Foundation of Korea","doi-asserted-by":"publisher","award":["NRF-2015R1A2A2A01008404"],"award-info":[{"award-number":["NRF-2015R1A2A2A01008404"]}],"id":[{"id":"10.13039\/501100003725","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Microbiol."],"DOI":"10.3389\/fmicb.2018.00834","type":"journal-article","created":{"date-parts":[[2018,4,30]],"date-time":"2018-04-30T04:21:58Z","timestamp":1525062118000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":49,"title":["Phylogeny Trumps Chemotaxonomy: A Case Study Involving Turicella otitidis"],"prefix":"10.3389","volume":"9","author":[{"given":"Inwoo","family":"Baek","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mincheol","family":"Kim","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Imchang","family":"Lee","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Seong-In","family":"Na","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michael","family":"Goodfellow","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jongsik","family":"Chun","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"1965","published-online":{"date-parts":[[2018,4,30]]},"reference":[{"key":"B1","doi-asserted-by":"publisher","first-page":"D115","DOI":"10.1093\/nar\/gkh131","article-title":"UniProt: the Universal Protein knowledgebase.","volume":"32","author":"Apweiler","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"B2","doi-asserted-by":"publisher","first-page":"2929","DOI":"10.1099\/ijsem.0.001122","article-title":"Lawsonella clevelandensis gen. nov., sp. nov., a new member of the suborder Corynebacterineae isolated from human abscesses.","volume":"66","author":"Bell","year":"2016","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"B3","doi-asserted-by":"publisher","first-page":"874","DOI":"10.1099\/ijs.0.012641-0","article-title":"Assignment of Brevibacterium stationis (ZoBell and Upham 1944) Breed 1953 to the genus Corynebacterium, as Corynebacterium stationis comb. nov., and emended description of the genus Corynebacterium to include isolates that can alkalinize citrate.","author":"Bernard","year":"2010","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"B4","doi-asserted-by":"publisher","first-page":"7596","DOI":"10.1128\/JB.187.22.7596-7606.2005","article-title":"Conditional depletion of KasA, a key enzyme of mycolic acid biosynthesis, leads to mycobacterial cell lysis.","volume":"187","author":"Bhatt","year":"2005","journal-title":"J. Bacteriol."},{"key":"B5","doi-asserted-by":"publisher","first-page":"263","DOI":"10.1146\/annurev.bi.46.070177.001403","article-title":"Control mechanisms in the synthesis of saturated fatty acids.","volume":"46","author":"Bloch","year":"1977","journal-title":"Annu. Rev. Biochem."},{"key":"B6","doi-asserted-by":"publisher","first-page":"23","DOI":"10.1007\/978-1-4939-3167-5_2","article-title":"UniProtKB\/Swiss-Prot, the manually annotated section of the UniProt KnowledgeBase: how to use the entry view.","volume":"1374","author":"Boutet","year":"2016","journal-title":"Methods Mol. Biol."},{"key":"B7","doi-asserted-by":"publisher","first-page":"5968","DOI":"10.1128\/JB.01412-12","article-title":"Draft genome sequence of Turicella otitidis ATCC 51513, isolated from middle ear fluid from a child with otitis media.","volume":"194","author":"Brinkrolf","year":"2012","journal-title":"J. Bacteriol."},{"key":"B8","doi-asserted-by":"publisher","first-page":"4166","DOI":"10.1099\/mic.0.2007\/012419-0","article-title":"Identification of the dehydratase component of the mycobacterial mycolic acid-synthesizing fatty acid synthase-II complex.","author":"Brown","year":"2007","journal-title":"Microbiology"},{"key":"B9","doi-asserted-by":"publisher","first-page":"537","DOI":"10.1038\/31159","article-title":"Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.","volume":"393","author":"Cole","year":"1998","journal-title":"Nature"},{"key":"B10","doi-asserted-by":"publisher","first-page":"349","DOI":"10.1111\/j.1574-6968.1988.tb02755.x","article-title":"Corynebacterium amycolatum sp. nov. a new mycolic acid-less Corynebacterium species from human skin.","volume":"49","author":"Collins","year":"1988","journal-title":"FEMS Microbiol. Lett."},{"key":"B11","doi-asserted-by":"publisher","first-page":"1449","DOI":"10.1099\/00207713-48-4-1449","article-title":"Corynebacterium kroppenstedtii sp. nov., a novel Corynebacterium that does not contain mycolic acids.","author":"Collins","year":"1998","journal-title":"Int. J. Syst. Bacteriol."},{"key":"B12","doi-asserted-by":"publisher","first-page":"925","DOI":"10.1099\/ijs.0.02950-0","article-title":"Corynebacterium caspium sp. nov., from a Caspian seal (Phoca caspica).","author":"Collins","year":"2004","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"B13","doi-asserted-by":"crossref","first-page":"316","DOI":"10.1128\/MMBR.45.2.316-354.1981","article-title":"Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implications.","volume":"45","author":"Collins","year":"1981","journal-title":"Microbiol. Rev."},{"key":"B14","doi-asserted-by":"publisher","first-page":"85","DOI":"10.1111\/j.1365-2958.2009.06625.x","article-title":"Menaquinone synthesis is critical for maintaining mycobacterial viability during exponential growth and recovery from non-replicating persistence.","volume":"72","author":"Dhiman","year":"2009","journal-title":"Mol. Microbiol."},{"key":"B15","doi-asserted-by":"publisher","first-page":"783","DOI":"10.1111\/j.1558-5646.1985.tb00420.x","article-title":"Confidence Limits on phylogenies: an approach using the bootstrap.","volume":"39","author":"Felsenstein","year":"1985","journal-title":"Evolution"},{"key":"B16","doi-asserted-by":"publisher","first-page":"2191","DOI":"10.1099\/ijs.0.63165-0","article-title":"Corynebacterium ciconiae sp. nov., isolated from the trachea of black storks (Ciconia nigra).","author":"Fernandez-Garayzabal","year":"2004","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"B17","doi-asserted-by":"publisher","first-page":"270","DOI":"10.1099\/00207713-44-2-270","article-title":"Turicella otitidis gen. nov., sp. nov., a coryneform bacterium isolated from patients with otitis media.","volume":"44","author":"Funke","year":"1994","journal-title":"Int. J. Syst. Bacteriol."},{"key":"B18","doi-asserted-by":"publisher","first-page":"5257","DOI":"10.1128\/JB.00254-07","article-title":"The two carboxylases of Corynebacterium glutamicum essential for fatty acid and mycolic acid synthesis.","volume":"189","author":"Gande","year":"2007","journal-title":"J. Bacteriol."},{"key":"B19","doi-asserted-by":"publisher","first-page":"44847","DOI":"10.1074\/jbc.M408648200","article-title":"Acyl-CoA carboxylases (accD2 and accD3), together with a unique polyketide synthase (Cg-pks), are key to mycolic acid biosynthesis in Corynebacterianeae such as Corynebacterium glutamicum and Mycobacterium tuberculosis.","volume":"279","author":"Gande","year":"2004","journal-title":"J. Biol. Chem."},{"key":"B20","doi-asserted-by":"publisher","first-page":"1424","DOI":"10.1099\/mic.0.2006\/003541-0","article-title":"The key role of the mycolic acid content in the functionality of the cell wall permeability barrier in Corynebacterineae.","author":"Gebhardt","year":"2007","journal-title":"Microbiology"},{"key":"B21","author":"Goodfellow","year":"2015","journal-title":"Bergey\u2019s Manual of Systematics of Archaea and Bacteria"},{"key":"B22","doi-asserted-by":"publisher","DOI":"10.1007\/978-0-387-68233-4","author":"Goodfellow","year":"2012","journal-title":"Bergey\u2019s Manual of Systematics Bacteriology"},{"key":"B23","doi-asserted-by":"publisher","first-page":"1009","DOI":"10.1099\/ijs.0.02502-0","article-title":"Corynebacterium sphenisci sp. nov., isolated from wild penguins.","author":"Goyache","year":"2003","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"B24","doi-asserted-by":"publisher","first-page":"1065","DOI":"10.1099\/ijs.0.02442-0","article-title":"Corynebacterium atypicum sp. nov., from a human clinical source, does not contain corynomycolic acids.","author":"Hall","year":"2003","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"B25","doi-asserted-by":"publisher","first-page":"4711","DOI":"10.1099\/ijsem.0.001415","article-title":"Reclassification of Amycolicicoccus subflavus as Hoyosella subflava comb. nov. and emended descriptions of the genus Hoyosella and Hoyosella altamirensis.","volume":"66","author":"Hamada","year":"2016","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"B26","doi-asserted-by":"publisher","first-page":"W236","DOI":"10.1093\/nar\/gkw370","article-title":"Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees.","volume":"44","author":"He","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"B27","doi-asserted-by":"publisher","first-page":"99","DOI":"10.1007\/s00253-003-1328-1","article-title":"The Corynebacterium glutamicum genome: features and impacts on biotechnological processes.","volume":"62","author":"Ikeda","year":"2003","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"B28","doi-asserted-by":"publisher","first-page":"689","DOI":"10.1099\/ijs.0.059360-0","article-title":"EzEditor: a versatile sequence alignment editor for both rRNA- and protein-coding genes.","author":"Jeon","year":"2014","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"B29","doi-asserted-by":"publisher","first-page":"3105","DOI":"10.1099\/ijs.0.008664-0","article-title":"Hoyosella altamirensis gen. nov., sp. nov., a new member of the order Actinomycetales isolated from a cave biofilm.","author":"Jurado","year":"2009","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"B30","doi-asserted-by":"publisher","first-page":"681","DOI":"10.1099\/00207713-49-2-681","article-title":"Williamsia muralis gen. nov., sp. nov., isolated from the indoor environment of a children\u2019s day care centre.","author":"K\u00e4mpfer","year":"1999","journal-title":"Int. J. Syst. Bacteriol."},{"key":"B31","doi-asserted-by":"publisher","first-page":"2803","DOI":"10.1099\/ijs.0.017962-0","article-title":"Tomitella biformata gen. nov., sp. nov., a new member of the suborder corynebacterineae isolated from a permafrost ice wedge.","volume":"60","author":"Katayama","year":"2010","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"B32","doi-asserted-by":"publisher","first-page":"131","DOI":"10.1007\/978-1-62703-646-7_8","article-title":"MAFFT: iterative refinement and additional methods.","volume":"1079","author":"Katoh","year":"2014","journal-title":"Methods Mol. Biol."},{"key":"B33","doi-asserted-by":"publisher","first-page":"843","DOI":"10.1099\/mic.0.055509-0","article-title":"A novel mycolic acid species defines two novel genera of the Actinobacteria. Hoyosella and Amycolicicoccus.","author":"Laneelle","year":"2012","journal-title":"Microbiology"},{"key":"B34","first-page":"312","article-title":"Atlas und Grundriss der Bakteriologie und Lehrbuch der speciellen bakteriologischen Diagnostik.","volume":"364","author":"Lehmann","year":"1896","journal-title":"Am. Nat."},{"key":"B35","doi-asserted-by":"publisher","first-page":"4716","DOI":"10.1099\/ijsem.0.001416","article-title":"Hoyosella rhizosphaerae sp. nov., a halotolerant actinobacterium isolated from rhizosphere soil of Suaeda salsa, and emended description of the genus Hoyosella.","volume":"66","author":"Li","year":"2016","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"B36","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0027731","article-title":"RAxML and FastTree: comparing two methods for large-scale maximum likelihood phylogeny estimation.","volume":"6","author":"Liu","year":"2011","journal-title":"PLoS One"},{"key":"B37","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1016\/j.chembiol.2013.11.011","article-title":"Mycolic acids: structures, biosynthesis, and beyond.","volume":"21","author":"Marrakchi","year":"2014","journal-title":"Chem. Biol."},{"key":"B38","doi-asserted-by":"publisher","first-page":"281","DOI":"10.1007\/s12275-018-8014-6","article-title":"UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction.","volume":"56","author":"Na","year":"2018","journal-title":"J. Microbiol."},{"key":"B39","doi-asserted-by":"publisher","first-page":"1587","DOI":"10.1016\/j.bbabio.2010.06.007","article-title":"Occurrence, biosynthesis and function of isoprenoid quinones.","volume":"1797","author":"Nowicka","year":"2010","journal-title":"Biochim. Biophys. Acta"},{"key":"B40","doi-asserted-by":"publisher","first-page":"3721","DOI":"10.1128\/JB.01740-06","article-title":"Functional complementation of the essential gene fabG1 of Mycobacterium tuberculosis by Mycobacterium smegmatis fabG but not Escherichia coli fabG.","volume":"189","author":"Parish","year":"2007","journal-title":"J. Bacteriol."},{"key":"B41","doi-asserted-by":"publisher","first-page":"314","DOI":"10.1073\/pnas.0305439101","article-title":"A polyketide synthase catalyzes the last condensation step of mycolic acid biosynthesis in mycobacteria and related organisms.","volume":"101","author":"Portevin","year":"2004","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"B42","doi-asserted-by":"publisher","first-page":"8862","DOI":"10.1074\/jbc.M408578200","article-title":"The acyl-AMP ligase FadD32 and AccD4-containing acyl-CoA carboxylase are required for the synthesis of mycolic acids and essential for mycobacterial growth: identification of the carboxylation product and determination of the acyl-CoA carboxylase components.","volume":"280","author":"Portevin","year":"2005","journal-title":"J. Biol. Chem."},{"key":"B43","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0009490","article-title":"FastTree 2\u2013approximately maximum-likelihood trees for large alignments.","volume":"5","author":"Price","year":"2010","journal-title":"PLoS One"},{"key":"B44","doi-asserted-by":"publisher","first-page":"85","DOI":"10.1093\/protein\/12.2.85","article-title":"Twilight zone of protein sequence alignments.","volume":"12","author":"Rost","year":"1999","journal-title":"Protein Eng."},{"key":"B45","doi-asserted-by":"publisher","first-page":"108","DOI":"10.1016\/0968-0004(84)90106-3","article-title":"Mechanisms of thermal adaptation in bacteria - blueprints for survival.","volume":"9","author":"Russell","year":"1984","journal-title":"Trends Biochem. Sci."},{"key":"B46","doi-asserted-by":"publisher","first-page":"14628","DOI":"10.1073\/pnas.0704132104","article-title":"The missing piece of the type II fatty acid synthase system from Mycobacterium tuberculosis.","volume":"104","author":"Sacco","year":"2007","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"B47","first-page":"51","article-title":"Influence of the growth cycle on the fatty acid and menaquinone composition of Streptomyces cyaneus NCIB 9616.","volume":"60","author":"Saddler","year":"1986","journal-title":"J. Appl. Microbiol."},{"key":"B48","doi-asserted-by":"publisher","DOI":"10.1038\/ncomms3304","article-title":"PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes.","volume":"4","author":"Segata","year":"2013","journal-title":"Nat. Commun."},{"key":"B49","doi-asserted-by":"publisher","first-page":"5614","DOI":"10.1021\/ja710207s","article-title":"Studies on a new biosynthetic pathway for menaquinone.","volume":"130","author":"Seto","year":"2008","journal-title":"J. Am. Chem. Soc."},{"key":"B50","doi-asserted-by":"publisher","first-page":"1312","DOI":"10.1093\/bioinformatics\/btu033","article-title":"RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.","volume":"30","author":"Stamatakis","year":"2014","journal-title":"Bioinformatics"},{"key":"B51","doi-asserted-by":"publisher","first-page":"13","DOI":"10.1007\/s10482-011-9664-0","article-title":"A call to arms for systematists: revitalising the purpose and practises underpinning the description of novel microbial taxa.","volume":"101","author":"Sutcliffe","year":"2012","journal-title":"Antonie Van Leeuwenhoek"},{"key":"B52","doi-asserted-by":"publisher","first-page":"51","DOI":"10.1016\/j.tim.2012.11.004","article-title":"A call to action for the international committee on systematics of prokaryotes.","volume":"21","author":"Sutcliffe","year":"2013","journal-title":"Trends Microbiol."},{"key":"B53","doi-asserted-by":"publisher","first-page":"6776","DOI":"10.1128\/AEM.02003-13","article-title":"Development of fatty acid-producing Corynebacterium glutamicum strains.","volume":"79","author":"Takeno","year":"2013","journal-title":"Appl. Environ. Microbiol."},{"key":"B54","doi-asserted-by":"publisher","first-page":"4671","DOI":"10.1128\/JB.187.13.4671-4682.2005","article-title":"Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.","volume":"187","author":"Tauch","year":"2005","journal-title":"J. Bacteriol."},{"key":"B55","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1016\/j.jbiotec.2008.02.009","article-title":"The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing.","volume":"136","author":"Tauch","year":"2008","journal-title":"J. Biotechnol."},{"key":"B56","doi-asserted-by":"publisher","DOI":"10.1128\/genomeA.00845-14","article-title":"Mycolic acid biosynthesis genes in the genome sequence of Corynebacterium atypicum DSM 44849.","volume":"2","author":"Tippelt","year":"2014","journal-title":"Genome Announc."},{"key":"B57","doi-asserted-by":"publisher","first-page":"292","DOI":"10.1021\/acscentsci.5b00212","article-title":"Partial saturation of menaquinone in Mycobacterium tuberculosis: function and essentiality of a novel reductase.","volume":"1","author":"Upadhyay","year":"2015","journal-title":"ACS Cent. Sci."},{"key":"B58","doi-asserted-by":"publisher","first-page":"4059","DOI":"10.1128\/JB.182.14.4059-4067.2000","article-title":"Inactivation of the inhA-encoded fatty acid synthase II (FASII) enoyl-acyl carrier protein reductase induces accumulation of the FASI end products and cell lysis of Mycobacterium smegmatis.","volume":"182","author":"Vilcheze","year":"2000","journal-title":"J. Bacteriol."},{"key":"B59","doi-asserted-by":"publisher","first-page":"638","DOI":"10.1099\/ijs.0.010546-0","article-title":"Amycolicicoccus subflavus gen. nov., sp. nov., an actinomycete isolated from a saline soil contaminated by crude oil.","author":"Wang","year":"2010","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"B60","doi-asserted-by":"publisher","first-page":"4495","DOI":"10.1099\/ijs.0.050757-0","article-title":"Corynebacterium frankenforstense sp. nov. and Corynebacterium lactis sp. nov., isolated from raw cow milk.","author":"Wiertz","year":"2013","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"B61","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0077033","article-title":"Systematic identification of gene families for use as \u201cmarkers\u201d for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups.","volume":"8","author":"Wu","year":"2013","journal-title":"PLoS One"},{"key":"B62","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2008-9-10-r151","article-title":"A simple, fast, and accurate method of phylogenomic inference.","volume":"9","author":"Wu","year":"2008","journal-title":"Genome Biol."},{"key":"B63","doi-asserted-by":"publisher","first-page":"1613","DOI":"10.1099\/ijsem.0.001755","article-title":"Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies.","volume":"67","author":"Yoon","year":"2017","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"B64","doi-asserted-by":"publisher","first-page":"149","DOI":"10.1093\/gbe\/evu007","article-title":"The futalosine pathway played an important role in menaquinone biosynthesis during early prokaryote evolution.","volume":"6","author":"Zhi","year":"2014","journal-title":"Genome Biol. Evol."}],"container-title":["Frontiers in Microbiology"],"original-title":[],"link":[{"URL":"http:\/\/journal.frontiersin.org\/article\/10.3389\/fmicb.2018.00834\/full","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,11,1]],"date-time":"2020-11-01T10:44:21Z","timestamp":1604227461000},"score":1,"resource":{"primary":{"URL":"http:\/\/journal.frontiersin.org\/article\/10.3389\/fmicb.2018.00834\/full"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,4,30]]},"references-count":64,"alternative-id":["10.3389\/fmicb.2018.00834"],"URL":"https:\/\/doi.org\/10.3389\/fmicb.2018.00834","relation":{},"ISSN":["1664-302X"],"issn-type":[{"value":"1664-302X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018,4,30]]},"article-number":"834"}}