{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,29]],"date-time":"2026-09-29T03:31:50Z","timestamp":1790652710835,"version":"4.1.0"},"reference-count":58,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2019,1,8]],"date-time":"2019-01-08T00:00:00Z","timestamp":1546905600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100007546","name":"Agence Nationale de S\u00e9curit\u00e9 Sanitaire de l\u2019Alimentation, de l\u2019Environnement et du Travail","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100007546","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Microbiol."],"DOI":"10.3389\/fmicb.2018.03239","type":"journal-article","created":{"date-parts":[[2019,1,8]],"date-time":"2019-01-08T16:08:27Z","timestamp":1546963707000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":30,"title":["Dissemination of CTX-M-Producing Escherichia coli in Freshwater Fishes From a French Watershed (Burgundy)"],"prefix":"10.3389","volume":"9","author":[{"given":"Loic","family":"Bollache","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Emeline","family":"Bardet","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"G\u00e9raldine","family":"Depret","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"S\u00e9bastien","family":"Motreuil","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Catherine","family":"Neuwirth","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"J\u00e9rome","family":"Moreau","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alain","family":"Hartmann","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1965","published-online":{"date-parts":[[2019,1,8]]},"reference":[{"key":"B1","doi-asserted-by":"publisher","first-page":"2482","DOI":"10.1128\/aac.02689-13","article-title":"Enterobacteriaceae with extended-spectrum- and pAmpC-type beta-lactamase-encoding genes isolated from freshwater fish from two lakes in Switzerland.","volume":"58","author":"Abgottspon","year":"2014","journal-title":"Antimicrob. Agents Chemother."},{"key":"B2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1007261","article-title":"A genomic overview of the population structure of Salmonella.","volume":"14","author":"Alikhan","year":"2018","journal-title":"PLoS Genet."},{"key":"B3","doi-asserted-by":"publisher","first-page":"931","DOI":"10.1100\/tsw.2006.181","article-title":"The bacterial microflora of fish, revised.","volume":"6","author":"Austin","year":"2006","journal-title":"Sci. World J."},{"key":"B4","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0127752","article-title":"Multidrug-resistant and extended spectrum beta-lactamase-producing Escherichia coli in Dutch surface water and wastewater.","volume":"10","author":"Blaak","year":"2015","journal-title":"PLoS One"},{"key":"B5","doi-asserted-by":"publisher","first-page":"8","DOI":"10.1016\/j.ijfoodmicro.2013.10.006","article-title":"Extended spectrum beta-lactamase- and constitutively AmpC-producing Enterobacteriaceae on fresh produce and in the agricultural environment.","volume":"168","author":"Blaak","year":"2014","journal-title":"Int. J. Food Microbiol."},{"key":"B6","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0005958","article-title":"Dissemination of Escherichia coli with CTX-M type ESBL between humans and yellow-legged gulls in the south of France.","volume":"4","author":"Bonnedahl","year":"2009","journal-title":"PLoS One"},{"key":"B7","doi-asserted-by":"publisher","first-page":"1939","DOI":"10.1093\/jac\/dkq222","article-title":"Characterization, and comparison, of human clinical and black-headed gull (Larus ridibundus) extended-spectrum beta-lactamase-producing bacterial isolates from Kalmar, on the southeast coast of Sweden.","volume":"65","author":"Bonnedahl","year":"2010","journal-title":"J. Antimicrob. Chemother."},{"key":"B8","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1128\/aac.48.1.1-14.2004","article-title":"Growing group of extended-spectrum beta-lactamases: the CTX-M enzymes.","volume":"48","author":"Bonnet","year":"2004","journal-title":"Antimicrob. Agents Chemother."},{"key":"B9","doi-asserted-by":"publisher","first-page":"290","DOI":"10.1089\/mdr.2017.0149","article-title":"High prevalence of extended-spectrum -lactamase-producing Enterobacteriaceae in wild fish from the Mediterranean sea in Algeria.","volume":"24","author":"Brahmi","year":"2018","journal-title":"Microb. Drug Resist."},{"key":"B10","doi-asserted-by":"publisher","first-page":"1658","DOI":"10.1093\/cid\/ciu190","article-title":"Wastewater treatment plants release large amounts of extended-spectrum beta-lactamase-producing Escherichia coli into the environment.","volume":"58","author":"Brechet","year":"2014","journal-title":"Clin. Infect. Dis."},{"key":"B11","doi-asserted-by":"publisher","first-page":"1234","DOI":"10.1016\/j.scitotenv.2018.01.343","article-title":"Antibiotic resistant bacteria are widespread in songbirds across rural and urban environments.","volume":"627","author":"Carter","year":"2018","journal-title":"Sci. Total Environ."},{"key":"B12","year":"","journal-title":"Methods for Antimicrobial Susceptibility Testing of Anaerobic Bacteria: Approved Standard. CLSI Document M11-A8."},{"key":"B13","year":"","journal-title":"Performance Standards for Antimicrobial Susceptibility Testing. Twenty-Second Information Supplement M100-S22."},{"key":"B14","doi-asserted-by":"publisher","first-page":"1311","DOI":"10.1093\/jac\/dkl415","article-title":"Detection of Escherichia coli harbouring extended-spectrum beta-lactamases of the CTX-M, TEM and SHV classes in faecal samples of wild animals in Portugal.","volume":"58","author":"Costa","year":"2006","journal-title":"J. Antimicrob. Chemother."},{"key":"B15","doi-asserted-by":"publisher","first-page":"1381","DOI":"10.1038\/ismej.2014.8","article-title":"Wastewater as a point source of antibiotic-resistance genes in the sediment of a freshwater lake.","volume":"8","author":"Czekalski","year":"2014","journal-title":"ISME J."},{"key":"B16","doi-asserted-by":"publisher","first-page":"898","DOI":"10.1038\/nrmicro1021","article-title":"Escherichia coli acid resistance: tales of an amateur acidophile.","volume":"2","author":"Foster","year":"2004","journal-title":"Nat. Rev. Microbiol."},{"key":"B17","doi-asserted-by":"publisher","DOI":"10.1038\/srep14372","article-title":"Pathogenic Escherichia coli producing extended-spectrum beta-lactamases isolated from surface water and wastewater.","volume":"5","author":"Franz","year":"2015","journal-title":"Sci. Rep."},{"key":"B18","doi-asserted-by":"publisher","first-page":"367","DOI":"10.1111\/j.1095-8649.1996.tb01434.x","article-title":"Microhabitat use and diet of 0+ cyprinid fishes in a lentic, regulated reach of the River Great Ouse, England.","volume":"48","author":"Garner","year":"1996","journal-title":"J. Fish Biol."},{"key":"B19","doi-asserted-by":"publisher","first-page":"1269","DOI":"10.1038\/ismej.2014.226","article-title":"Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution.","volume":"9","author":"Gillings","year":"2015","journal-title":"ISME J."},{"key":"B20","doi-asserted-by":"publisher","first-page":"215","DOI":"10.1089\/mdr.2011.0145","article-title":"Iberian wolf as a reservoir of extended-spectrum beta-lactamase-producing Escherichia coli of the TEM, SHV, and CTX-M groups.","volume":"18","author":"Goncalves","year":"2012","journal-title":"Microb. Drug Resist."},{"key":"B21","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2011.00246","article-title":"Extended-spectrum beta-lactamases producing E. coli in wildlife, yet another form of environmental pollution?","volume":"2","author":"Guenther","year":"2011","journal-title":"Front. Microbiol."},{"key":"B22","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2012.00083","article-title":"Occurrence of CTX-M producing Escherichia coli in soils, cattle, and farm environment in France (Burgundy Region).","volume":"3","author":"Hartmann","year":"2012","journal-title":"Front. Microbiol."},{"key":"B23","doi-asserted-by":"publisher","first-page":"S75","DOI":"10.3147\/jsfp.51.S75","article-title":"Spread of antibiotic and antimicrobial susceptibility of ESBL-producing Escherichia coli isolated from wild and cultured fish in the Mekong delta, Vietnam.","volume":"51","author":"Hon","year":"2016","journal-title":"Fish Pathol."},{"key":"B24","doi-asserted-by":"publisher","first-page":"187","DOI":"10.1111\/j.1095-8649.1982.tb03998.x","article-title":"The feeding habits of stone loach, Noemacheilus bavbatulus (L.), and bullhead, Cottus gobio L.","volume":"21","author":"Hyslop","year":"1982","journal-title":"J. Fish Biol."},{"key":"B25","doi-asserted-by":"publisher","first-page":"867","DOI":"10.1093\/clinids\/10.4.867","article-title":"Extended broad-spectrum beta-lactamases conferring transferable resistance to newer beta-lactam agents in Enterobacteriaceae - hospital prevalence and susceptibility patterns.","volume":"10","author":"Jarlier","year":"1988","journal-title":"Rev. Infect. Dis."},{"key":"B26","doi-asserted-by":"publisher","first-page":"2350","DOI":"10.1093\/jac\/dks250","article-title":"Prevalence and characteristics of beta-lactamase and plasmid-mediated quinolone resistance genes in Escherichia coli isolated from farmed fish in China.","volume":"67","author":"Jiang","year":"2012","journal-title":"J. Antimicrob. Chemother."},{"key":"B27","author":"Keith","year":"2001","journal-title":"Atlas des Poissons D\u2019eau Douce de France."},{"key":"B28","doi-asserted-by":"publisher","first-page":"W242","DOI":"10.1093\/nar\/gkw290","article-title":"Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees.","volume":"44","author":"Letunic","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"B29","doi-asserted-by":"publisher","first-page":"873","DOI":"10.1111\/j.1469-0691.2011.03497.x","article-title":"Dutch patients, retail chicken meat and poultry share the same ESBL genes, plasmids and strains.","volume":"17","author":"Leverstein-van Hall","year":"2011","journal-title":"Clin. Microbiol. Infect."},{"key":"B30","first-page":"751","article-title":"Reservoirs of antibiotic-resistant Enterobacteriaceae among animals sympatric to humans in Senegal: extended-spectrum beta-lactamases in bacteria in a black rat (Rattus rattus).","volume":"3","author":"Literak","year":"2009","journal-title":"Afr. J. Microbiol. Res."},{"key":"B31","doi-asserted-by":"publisher","first-page":"1702","DOI":"10.1111\/j.1365-2672.2009.04572.x","article-title":"Antimicrobial-resistant faecal Escherichia coli in wild mammals in central Europe: multiresistant Escherichia coli producing extended-spectrum beta-lactamases in wild boars.","volume":"108","author":"Literak","year":"2010","journal-title":"J. Appl. Microbiol."},{"key":"B32","doi-asserted-by":"publisher","first-page":"451","DOI":"10.1093\/jac\/dki239","article-title":"CTX-M: changing the face of ESBLs in the UK.","volume":"56","author":"Livermore","year":"2005","journal-title":"J. Antimicrob. Chemother."},{"key":"B33","doi-asserted-by":"publisher","first-page":"1022","DOI":"10.1128\/Aac.45.4.1022-1029.2001","article-title":"Rapid screening technique for class 1 integrons in Enterobacteriaceae and nonfermenting gram-negative bacteria and its use in molecular epidemiology.","volume":"45","author":"Maguire","year":"2001","journal-title":"Antimicrob. Agents Chemother."},{"key":"B34","doi-asserted-by":"publisher","first-page":"60","DOI":"10.1016\/j.marpolbul.2014.11.021","article-title":"Prevalence and diversity of extended-spectrum-beta-lactamase-producing Enterobacteriaceae from marine beach waters.","volume":"90","author":"Maravic","year":"2015","journal-title":"Mar. Pollut. Bull."},{"key":"B35","doi-asserted-by":"publisher","first-page":"36","DOI":"10.1016\/j.tim.2013.11.001","article-title":"The role of aquatic ecosystems as reservoirs of antibiotic resistance.","volume":"22","author":"Marti","year":"2014","journal-title":"Trends Microbiol."},{"key":"B36","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2017.02476","article-title":"High prevalence of CTX-M-15-Type ESBL-producing E. coli from migratory avian species in Pakistan.","volume":"8","author":"Mohsin","year":"2017","journal-title":"Front. Microbiol."},{"key":"B37","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2016.01862","article-title":"Predominance of CTX-M-15 among ESBL producers from environment and fish gut from the shores of Lake Victoria in Mwanza, Tanzania.","volume":"7","author":"Moremi","year":"2016","journal-title":"Front. Microbiol."},{"key":"B38","author":"Nicholas","year":"1997","journal-title":"GeneDoc: A Tool for Editing and Annotating Multiple Sequence Alignments."},{"key":"B39","doi-asserted-by":"publisher","first-page":"65","DOI":"10.1016\/j.scitotenv.2013.04.067","article-title":"Genetic diversity and antimicrobial resistance of Escherichia coli from Tagus estuary (Portugal).","volume":"461","author":"Pereira","year":"2013","journal-title":"Sci. Total Environ."},{"key":"B40","doi-asserted-by":"publisher","first-page":"2756","DOI":"10.1128\/aac.05982-11","article-title":"Wild coastline birds as reservoirs of broad-spectrum-beta-lactamase-producing Enterobacteriaceae in Miami Beach, Florida.","volume":"56","author":"Poirel","year":"2012","journal-title":"Antimicrob. Agents Chemother."},{"key":"B41","doi-asserted-by":"publisher","first-page":"1559","DOI":"10.1139\/f77-219","article-title":"Food and feeding relation of Eurasian perch (Perca fluviatilis) and pikeperch (Stizostedion lucioperca) in various waters of the USSR.","volume":"34","author":"Popova","year":"1977","journal-title":"J. Fish. Res. Board Can."},{"key":"B42","doi-asserted-by":"publisher","first-page":"1981","DOI":"10.1016\/j.watres.2009.11.052","article-title":"ESBL-producing E. coli in Austrian sewage sludge.","volume":"44","author":"Reinthaler","year":"2010","journal-title":"Water Res."},{"key":"B43","doi-asserted-by":"publisher","first-page":"989","DOI":"10.1093\/jac\/057","article-title":"Beta-lactamases involved in resistance to broad-spectrum cephalosporins in Escherichia coli and Klebsiella spp. clinical isolates collected between 1994 and 1996, in Barcelona (Spain).","volume":"49","author":"Sabate","year":"2002","journal-title":"J. Antimicrob. Chemother."},{"key":"B44","doi-asserted-by":"publisher","first-page":"744","DOI":"10.1016\/j.ijantimicag.2016.09.023","article-title":"Trends of extended-spectrum beta-lactamase-producing Escherichia coli sequence type 131 and its H30 subclone in a French hospital over a 15-year period.","volume":"48","author":"Sauget","year":"2016","journal-title":"Int. J. Antimicrob. Agents"},{"key":"B45","doi-asserted-by":"publisher","first-page":"11825","DOI":"10.1021\/acs.est.5b01888","article-title":"Fate of extended-spectrum beta-lactamase-producing Escherichia coli from faecal sources in surface water and probability of human exposure through swimming.","volume":"49","author":"Schijyen","year":"2015","journal-title":"Environ. Sci. Technol."},{"key":"B46","doi-asserted-by":"publisher","first-page":"790","DOI":"10.1111\/j.1574-6976.2011.00273.x","article-title":"Gene flow, mobile genetic elements and the recruitment of antibiotic resistance genes into gram-negative pathogens.","volume":"35","author":"Stokes","year":"2011","journal-title":"FEMS Microbiol. Rev."},{"key":"B47","doi-asserted-by":"publisher","first-page":"4134","DOI":"10.1128\/AEM.00359-12","article-title":"Resistance to broad-spectrum antibiotics in aquatic systems: anthropogenic activities modulate the dissemination of blaCTX-M-like genes.","volume":"78","author":"Tacao","year":"2012","journal-title":"Appl. Environ. Microbiol."},{"key":"B48","doi-asserted-by":"publisher","first-page":"278","DOI":"10.1016\/j.tree.2011.03.004","article-title":"Aquatic systems: maintaining, mixing and mobilising antimicrobial resistance?","volume":"26","author":"Taylor","year":"2011","journal-title":"Trends Ecol. Evol."},{"key":"B49","doi-asserted-by":"publisher","first-page":"S3","DOI":"10.1016\/j.ajic.2006.05.219","article-title":"Mechanisms of antimicrobial resistance in bacteria.","volume":"34","author":"Tenover","year":"2006","journal-title":"Am. J. Infect. Control"},{"key":"B50","doi-asserted-by":"publisher","first-page":"519","DOI":"10.1111\/1365-2664.12596","article-title":"Antimicrobial resistance in wildlife.","volume":"53","author":"Vittecoq","year":"2016","journal-title":"J. Appl. Ecol."},{"key":"B51","doi-asserted-by":"publisher","first-page":"178","DOI":"10.1016\/j.watres.2016.08.015","article-title":"Free water surface constructed wetlands limit the dissemination of extended-spectrum beta-lactamase producing Escherichia coli in the natural environment.","volume":"104","author":"Vivant","year":"2016","journal-title":"Water Res."},{"key":"B52","doi-asserted-by":"publisher","first-page":"237","DOI":"10.1111\/j.1095-8649.1987.tb05749.x","article-title":"The diet and growth of 0-group dace, Leuciscus leuciscus (L.), and roach, Rutilus rutilus (L.), in a lowland river.","volume":"30","author":"Weatherley","year":"1987","journal-title":"J. Fish Biol."},{"key":"B53","doi-asserted-by":"publisher","first-page":"225","DOI":"10.1111\/j.1095-8649.1971.tb03667.x","article-title":"Feeding and digestion in two cottid fishes, freshwater Cottus gobio L. and the marine Enophrys bubalis (Euphrasen).","volume":"3","author":"Western","year":"1971","journal-title":"J. Fish Biol."},{"key":"B54","doi-asserted-by":"publisher","first-page":"1136","DOI":"10.1111\/j.1365-2958.2006.05172.x","article-title":"Sex and virulence in Escherichia coli: an evolutionary perspective.","volume":"60","author":"Wirth","year":"2006","journal-title":"Mol. Microbiol."},{"key":"B55","doi-asserted-by":"publisher","first-page":"515","DOI":"10.1086\/654883","article-title":"Emergence and dissemination of extended-spectrumbeta-lactamase-producing Escherichia coli in the community: lessons from the study of a remote and controlled population.","volume":"202","author":"Woerther","year":"2010","journal-title":"J. Infect. Dis."},{"key":"B56","doi-asserted-by":"publisher","first-page":"1395","DOI":"10.1101\/gr.232397.117","article-title":"GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens.","volume":"28","author":"Zhou","year":"2017","journal-title":"Genome Res."},{"key":"B57","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1016\/j.scitotenv.2015.03.079","article-title":"Replicon typing of plasmids carrying bla(CTX-M-15) among Enterobacteriaceae isolated at the environment, livestock and human interface.","volume":"521","author":"Zurfluh","year":"2015","journal-title":"Sci. Total Environ."},{"key":"B58","doi-asserted-by":"publisher","first-page":"3021","DOI":"10.1128\/Aem.00054-13","article-title":"Characteristics of extended-spectrum beta-lactamase- and carbapenemase-producing Enterobacteriaceae Isolates from rivers and lakes in Switzerland.","volume":"79","author":"Zurfluh","year":"2013","journal-title":"Appl. Environ. Microbiol."}],"container-title":["Frontiers in Microbiology"],"original-title":[],"link":[{"URL":"https:\/\/www.frontiersin.org\/article\/10.3389\/fmicb.2018.03239\/full","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,18]],"date-time":"2019-01-18T12:56:23Z","timestamp":1547816183000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.frontiersin.org\/article\/10.3389\/fmicb.2018.03239\/full"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,1,8]]},"references-count":58,"alternative-id":["10.3389\/fmicb.2018.03239"],"URL":"https:\/\/doi.org\/10.3389\/fmicb.2018.03239","relation":{},"ISSN":["1664-302X"],"issn-type":[{"value":"1664-302X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2019,1,8]]},"article-number":"3239"}}