{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,19]],"date-time":"2026-01-19T08:24:47Z","timestamp":1768811087050,"version":"3.49.0"},"reference-count":32,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2020,1,15]],"date-time":"2020-01-15T00:00:00Z","timestamp":1579046400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Microbiol."],"DOI":"10.3389\/fmicb.2019.02940","type":"journal-article","created":{"date-parts":[[2020,1,15]],"date-time":"2020-01-15T12:57:17Z","timestamp":1579093037000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":11,"title":["State-Wide Genomic and Epidemiological Analyses of Vancomycin-Resistant Enterococcus faecium in Tasmania\u2019s Public Hospitals"],"prefix":"10.3389","volume":"10","author":[{"given":"Kelvin W. C.","family":"Leong","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ranmini","family":"Kalukottege","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Louise A.","family":"Cooley","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tara L.","family":"Anderson","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anne","family":"Wells","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Emma","family":"Langford","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ronan F.","family":"O\u2019Toole","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"1965","published-online":{"date-parts":[[2020,1,15]]},"reference":[{"key":"B1","author":"Health","year":"2016","journal-title":"Public Health Act 1997"},{"key":"B2","doi-asserted-by":"publisher","first-page":"551","DOI":"10.1017\/ice.2019.41","article-title":"Vancomycin-resistant Enterococcus (VRE) outbreak in a neonatal intensive care unit and special care nursery at a tertiary-care hospital in Australia-A retrospective case-control study.","volume":"40","author":"Andersson","year":"2019","journal-title":"Infect. Control Hosp. Epidemiol."},{"key":"B3","author":"Andrews","year":"2010","journal-title":"FastQC: A Quality Control Tool for High Throughput Sequence Data."},{"key":"B4","year":"2017","journal-title":"AURA 2017: Second Australian Report on Antimicrobial Use, and Resistance. in Human Health."},{"key":"B5","doi-asserted-by":"publisher","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","article-title":"Trimmomatic: a flexible trimmer for Illumina sequence data.","volume":"30","author":"Bolger","year":"2014","journal-title":"Bioinformatics"},{"key":"B6","doi-asserted-by":"publisher","DOI":"10.7717\/peerj.2916","article-title":"Evolutionary origins of the emergent ST796 clone of vancomycin resistant Enterococcus faecium.","volume":"5","author":"Buultjens","year":"2017","journal-title":"PeerJ"},{"key":"B7","doi-asserted-by":"publisher","first-page":"E181","DOI":"10.1111\/1469-0691.12132","article-title":"Enterococcal bacteraemia: factors influencing mortality, length of stay and costs of hospitalization.","volume":"19","author":"Cheah","year":"2013","journal-title":"Clin. Microbiol. Infect."},{"key":"B8","doi-asserted-by":"publisher","first-page":"73","DOI":"10.1097\/pat.0000000000000038","article-title":"A change in the molecular epidemiology of vancomycin resistant enterococci in Western Australia.","volume":"46","author":"Coombs","year":"","journal-title":"Pathology"},{"key":"B9","doi-asserted-by":"publisher","first-page":"897","DOI":"10.1128\/jcm.03286-13","article-title":"Molecular epidemiology of enterococcal bacteremia in Australia.","volume":"52","author":"Coombs","year":"","journal-title":"J. Clin. Microbiol."},{"key":"B10","article-title":"Australian Group on Antimicrobial Resistance (AGAR) Australian Enterococcal Sepsis Outcome Programme (AESOP) Annual Report 2016.","volume":"2018","author":"Coombs","year":"2018","journal-title":"Commun. Dis. Intell."},{"key":"B11","doi-asserted-by":"publisher","first-page":"3788","DOI":"10.1128\/jcm.01946-15","article-title":"Core genome multilocus sequence typing scheme for high- resolution typing of Enterococcus faecium.","volume":"53","author":"De Been","year":"2015","journal-title":"J. Clin. Microbiol."},{"key":"B12","doi-asserted-by":"publisher","DOI":"10.14440\/jbm.2019.276","article-title":"A step-by-step beginner\u2019s protocol for whole genome sequencing of human bacterial pathogens.","volume":"6","author":"Gautam","year":"2019","journal-title":"J. Biol. Methods"},{"key":"B13","doi-asserted-by":"publisher","first-page":"234","DOI":"10.1016\/j.jhin.2012.08.010","article-title":"Significant reduction in vancomycin-resistant Enterococcus colonization and bacteraemia after introduction of a bleach-based cleaning-disinfection programme.","volume":"82","author":"Grabsch","year":"2012","journal-title":"J. Hosp. Infect."},{"key":"B14","doi-asserted-by":"publisher","DOI":"10.1016\/j.patbio.2008.07.017","article-title":"Vancomycin resistant Enterococcus faecium infection in a liver transplant recipient (abstract).","volume":"25","author":"Kamarulzaman","year":"1995","journal-title":"Aust. N. Z. J. Med."},{"key":"B15","doi-asserted-by":"publisher","DOI":"10.1186\/2047-2994-1-31","article-title":"Prevalence and risk factors for VRE colonisation in a tertiary hospital in Melbourne, Australia: a cross sectional study.","volume":"1","author":"Karki","year":"2012","journal-title":"Antimicrob. Resist. Infect. Control"},{"key":"B16","doi-asserted-by":"publisher","first-page":"3374","DOI":"10.1128\/JCM.01501-13","article-title":"Long-term carriage of vancomycin-resistant enterococci in patients discharged from hospitals: a 12-year retrospective cohort study.","volume":"51","author":"Karki","year":"2013","journal-title":"J. Clin. Microbiol."},{"key":"B17","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0218185","article-title":"Emergence of an Australian-like pstS-null vancomycin resistant Enterococcus faecium clone in Scotland.","volume":"14","author":"Lemonidis","year":"2019","journal-title":"PLoS One"},{"key":"B18","article-title":"Emergence of Vancomycin-Resistant Enterococcus faecium at an Australian Hospital: a Whole Genome Sequencing Analysis.","volume":"8","author":"Leong","year":"","journal-title":"Sci. Rep."},{"key":"B19","first-page":"e438","article-title":"Draft genome sequence of new vancomycin-resistant Enterococcus faecium Sequence Type 1421.","volume":"6","author":"Leong","year":"","journal-title":"Genome Announc."},{"key":"B20","doi-asserted-by":"publisher","first-page":"1061","DOI":"10.1016\/j.ajic.2015.05.047","article-title":"Outbreak of vanB vancomycin-resistant Enterococcus faecium colonization in a neonatal service.","volume":"43","author":"Lister","year":"2015","journal-title":"Am. J. Infect. Control"},{"key":"B21","doi-asserted-by":"publisher","DOI":"10.1186\/s13756-018-0335-z","article-title":"Vancomycin-resistant Enterococcus faecium sequence type 796 - rapid international dissemination of a new epidemic clone.","volume":"7","author":"Mahony","year":"2018","journal-title":"Antimicrob. Resist. Infect. Control"},{"key":"B22","doi-asserted-by":"publisher","first-page":"410","DOI":"10.1016\/S1473-3099(18)30714-X","article-title":"An environmental cleaning bundle and health-care-associated infections in hospitals (REACH): a multicentre, randomised trial.","volume":"19","author":"Mitchell","year":"2019","journal-title":"Lancet Infect Dis."},{"key":"B23","year":"2019","journal-title":"Australian Guidelines for the Prevention and Control of Infection in Healthcare."},{"key":"B24","doi-asserted-by":"publisher","DOI":"10.1126\/scitranslmed.aar6115","article-title":"Increasing tolerance of hospital Enterococcus faecium to handwash alcohols.","volume":"10","author":"Pidot","year":"2018","journal-title":"Sci. Transl. Med."},{"key":"B25","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2180-12-135","article-title":"Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes.","volume":"12","author":"Qin","year":"2012","journal-title":"BMC Microbiol."},{"key":"B26","doi-asserted-by":"publisher","first-page":"350","DOI":"10.1016\/j.cmi.2017.12.016","article-title":"Whole genome sequencing options for bacterial strain typing and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene-based approaches.","volume":"24","author":"Schurch","year":"2018","journal-title":"Clin. Microbiol. Infect."},{"key":"B27","doi-asserted-by":"publisher","first-page":"1487","DOI":"10.1093\/jac\/dky074","article-title":"Relentless spread and adaptation of non-typeable vanA vancomycin-resistant Enterococcus faecium: a genome-wide investigation.","volume":"73","author":"Van Hal","year":"2018","journal-title":"J. Antimicrob. Chemother."},{"key":"B28","doi-asserted-by":"publisher","DOI":"10.2807\/1560-7917.ES.2018.23.29.1800351","article-title":"Outbreak of vancomycin-resistant Enterococcus faecium clone ST796, Switzerland, December 2017 to April 2018.","volume":"23","author":"Wassilew","year":"2018","journal-title":"Euro. Surveill."},{"key":"B29","doi-asserted-by":"crossref","first-page":"3734","DOI":"10.1128\/JCM.36.12.3734-3736.1998","article-title":"Survival of vancomycin-resistant and vancomycin-susceptible enterococci on dry surfaces.","volume":"36","author":"Wendt","year":"1998","journal-title":"J. Clin. Microbiol."},{"key":"B30","author":"Wilson","year":"2017","journal-title":"Tasmanian Acute Public Hospitals Healthcare Associated Infection."},{"key":"B31","author":"Wilson","year":"2018","journal-title":"Vancomycin resistant Enterococci (VRE) Surveillance Protocol V4"},{"key":"B32","first-page":"3","article-title":"Environmental contamination as an important route for the transmission of the hospital pathogen VRE: modeling and prediction of classical interventions.","volume":"1","author":"Wolkewitz","year":"2008","journal-title":"Infec. Dis.: Res. Treat."}],"container-title":["Frontiers in Microbiology"],"original-title":[],"link":[{"URL":"https:\/\/www.frontiersin.org\/article\/10.3389\/fmicb.2019.02940\/full","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,1,15]],"date-time":"2020-01-15T12:57:20Z","timestamp":1579093040000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.frontiersin.org\/article\/10.3389\/fmicb.2019.02940\/full"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,1,15]]},"references-count":32,"alternative-id":["10.3389\/fmicb.2019.02940"],"URL":"https:\/\/doi.org\/10.3389\/fmicb.2019.02940","relation":{},"ISSN":["1664-302X"],"issn-type":[{"value":"1664-302X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2020,1,15]]},"article-number":"2940"}}