{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,2]],"date-time":"2026-07-02T17:33:03Z","timestamp":1783013583749,"version":"3.54.6"},"reference-count":68,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2021,8,31]],"date-time":"2021-08-31T00:00:00Z","timestamp":1630368000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100004530","name":"Universiti Putra Malaysia","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100004530","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Microbiol."],"abstract":"<jats:p><jats:italic>Salmonella enterica<\/jats:italic>subspecies<jats:italic>enterica<\/jats:italic>serovar Enteritidis is one of the major foodborne zoonotic pathogens globally. It has significantly impacted human health and global trade. In this investigation, whole-genome sequencing was employed to determine the antimicrobial resistance (AMR) pattern of a collection of<jats:italic>Salmonella<\/jats:italic>Enteritidis isolated from humans, poultry, and food sources. The study also investigated the virulence genes profile of the isolates as well as the phylogenetic relationships among strains. Illumina NextSeq technology was used to sequence the genome of 82<jats:italic>Salmonella<\/jats:italic>Enteritidis strains isolated over 3 years (2016\u20132018) in Peninsular Malaysia. The pattern of resistance showed that tetracycline had the highest frequency (37\/82, 45.12%), and isolates from food samples showed the highest rate of 9\/18 (50.00%), followed by human 17\/35 (48.57%) and then poultry 11\/29 (37.93%). The second drug with the highest resistance rate is ampicillin with 5\/29 (17.24%) for poultry, 4\/35 (11.43%) for human, and 0\/18 (0.00%) for food isolates respectively. Similarly, a total of 19 antimicrobial resistance (AMR) genes corresponding to the nine drugs used in the disc diffusion assay were evaluated from the whole genome sequence data. The aminoglycoside resistance gene<jats:italic>aac(6\u2032)-ly<\/jats:italic>was detected in 79 of the 82 isolates (96.34%). While the phylogenetic analysis revealed distinct lineages isolated, the three sources indicating possible cross-contamination. In conclusion, the results showed that the genomic profile of<jats:italic>Salmonella<\/jats:italic>Enteritidis isolated from humans, poultry, and food samples share genetic traits, hence the need to institute measures at controlling the continuous spread of these resistant pathogens.<\/jats:p>","DOI":"10.3389\/fmicb.2021.652642","type":"journal-article","created":{"date-parts":[[2021,9,3]],"date-time":"2021-09-03T21:41:24Z","timestamp":1630705284000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":19,"title":["Discerning the Antimicrobial Resistance, Virulence, and Phylogenetic Relatedness of Salmonella Isolates Across the Human, Poultry, and Food Materials Sources in Malaysia"],"prefix":"10.3389","volume":"12","author":[{"given":"Zunita","family":"Zakaria","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Latiffah","family":"Hassan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Norazah","family":"Ahmad","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Suraya Amir","family":"Husin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rohaya Mohd","family":"Ali","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zawiyah","family":"Sharif","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Norfitriah Mohamed","family":"Sohaimi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bashiru","family":"Garba","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1965","published-online":{"date-parts":[[2021,8,31]]},"reference":[{"key":"B1","doi-asserted-by":"publisher","first-page":"484","DOI":"10.17582\/journal.aavs\/2019\/7.6.484.491","article-title":"Current trend on the economic and public health significance of salmonellosis in Iraq.","volume":"7","author":"Abdulhaleem","year":"2019","journal-title":"Adv. Anim. Vet. Sci."},{"key":"B2","doi-asserted-by":"publisher","first-page":"436","DOI":"10.1002\/fsn3.119","article-title":"Antimicrobial-resistant genes associated with Salmonella spp. isolated from human, poultry, and seafood sources.","volume":"2","author":"Adesiji","year":"2014","journal-title":"Food Sci. Nutr."},{"key":"B3","author":"Azmi","year":"2018","journal-title":"Antibiotic Use in Food Animals: Malaysia Overview."},{"key":"B4","author":"Azmi","year":"2021","journal-title":"Antibiotic Use in Food Animals: Malaysia Overview."},{"key":"B5","doi-asserted-by":"crossref","first-page":"1","DOI":"10.59096\/osir.v10i2.263136","article-title":"A Large Common Source Outbreak of Salmonella typhimurium Linked to Kuala Terengganu Night Markets, Malaysia, 2014.","volume":"10","author":"Balkis","year":"2017","journal-title":"OSIR J."},{"key":"B6","doi-asserted-by":"publisher","first-page":"455","DOI":"10.1089\/cmb.2012.0021","article-title":"SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing.","volume":"19","author":"Bankevich","year":"2012","journal-title":"J. Comput. Biol."},{"key":"B7","doi-asserted-by":"publisher","first-page":"237","DOI":"10.1186\/1471-2180-9-237","article-title":"Genomic and phenotypic variation in epidemic-spanning Salmonella enterica serovar Enteritidis isolates.","volume":"9","author":"Betancor","year":"2009","journal-title":"BMC Microbiol."},{"key":"B8","doi-asserted-by":"publisher","first-page":"421","DOI":"10.1186\/1471-2105-10-421","article-title":"BLAST+: Architecture and applications.","volume":"10","author":"Camacho","year":"2009","journal-title":"BMC Bioinform."},{"key":"B9","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/s41598-018-28844-6","article-title":"Changing of the Genomic Pattern of Salmonella Enteritidis Strains Isolated in Brazil over a 48 year-period revealed by Whole Genome SNP Analyses.","volume":"8","author":"Campioni","year":"2018","journal-title":"Sci. Rep."},{"key":"B10","doi-asserted-by":"publisher","first-page":"D694","DOI":"10.1093\/NAR\/GKV1239","article-title":"VFDB 2016: Hierarchical and refined dataset for big data analysis - 10 years on.","volume":"44","author":"Chen","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"B11","doi-asserted-by":"publisher","first-page":"112","DOI":"10.1038\/sj.icb.7100007","article-title":"Salmonella, the host and disease: A brief review.","volume":"85","author":"Coburn","year":"2007","journal-title":"Immunol. Cell Biol."},{"key":"B12","doi-asserted-by":"publisher","first-page":"1841","DOI":"10.3389\/FMICB.2018.01841","article-title":"Comparative Genomic Studies of Salmonella Heidelberg Isolated From Chicken- and Turkey-Associated Farm Environmental Samples.","volume":"9","author":"Deblais","year":"2018","journal-title":"Front. Microbiol."},{"key":"B13","doi-asserted-by":"publisher","first-page":"61","DOI":"10.1101\/gr.5512906","article-title":"A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination?","volume":"17","author":"Didelot","year":"2007","journal-title":"Genome Res."},{"key":"B14","doi-asserted-by":"publisher","first-page":"2554","DOI":"10.3389\/fmicb.2019.02554","article-title":"Salmonella Serotyping; Comparison of the Traditional Method to a Microarray-Based Method and an in silico Platform Using Whole Genome Sequencing Data.","volume":"10","author":"Diep","year":"2019","journal-title":"Front. Microbiol."},{"key":"B15","doi-asserted-by":"publisher","first-page":"755","DOI":"10.1093\/bioinformatics\/14.9.755","article-title":"Profile hidden Markov models.","volume":"14","author":"Eddy","year":"1998","journal-title":"Bioinformatics"},{"key":"B16","doi-asserted-by":"publisher","first-page":"8050432","DOI":"10.1155\/2017\/8050432","article-title":"Molecular Identification of Aminoglycoside-Modifying Enzymes and Plasmid-Mediated Quinolone Resistance Genes among Klebsiella pneumoniae Clinical Isolates Recovered from Egyptian Patients.","volume":"2017","author":"El-Badawy","year":"2017","journal-title":"Int. J. Microbiol."},{"key":"B17","doi-asserted-by":"publisher","first-page":"16","DOI":"10.1186\/s12302-019-0201-5","article-title":"Assessment of the impact of abattoir effluent on the quality of groundwater in a residential area of Omu-Aran.","volume":"31","author":"Elemile","year":"2019","journal-title":"Nigeria. Environ. Sci. Eur."},{"key":"B18","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1099\/MGEN.0.000425","article-title":"Comparing serotyping with whole-genome sequencing for subtyping of non-typhoidal Salmonella enterica: a large-scale analysis of 37 serotypes with a public health impact in the USA.","volume":"6","author":"Elnekave","year":"2020","journal-title":"Microb. Genomics"},{"key":"B19","doi-asserted-by":"publisher","first-page":"284","DOI":"10.1080\/21553769.2015.1051243","article-title":"Salmonella: A review on pathogenesis, epidemiology and antibiotic resistance.","volume":"8","author":"Eng","year":"2015","journal-title":"Front. Life Sci."},{"key":"B20","doi-asserted-by":"publisher","first-page":"e0248561","DOI":"10.1371\/JOURNAL.PONE.0248561","article-title":"Cost of whole genome sequencing for non-typhoidal Salmonella enterica.","volume":"16","author":"Ford","year":"2021","journal-title":"PLoS One"},{"key":"B21","doi-asserted-by":"publisher","first-page":"135","DOI":"10.3389\/FMICB.2013.00135","article-title":"Genetic mechanisms of antimicrobial resistance identified in Salmonella enterica, Escherichia coli, and Enteroccocus spp. isolated from U.S. food animals.","volume":"4","author":"Frye","year":"2013","journal-title":"Front. Microbiol."},{"key":"B22","doi-asserted-by":"publisher","first-page":"2877","DOI":"10.1093\/BIOINFORMATICS\/BTV271","article-title":"kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome.","volume":"31","author":"Gardner","year":"2015","journal-title":"Bioinformatics"},{"key":"B23","doi-asserted-by":"publisher","first-page":"e0191042","DOI":"10.1371\/journal.pone.0191042","article-title":"Comparative genomics identifies distinct lineages of S. Enteritidis from Queensland, Australia.","volume":"13","author":"Graham","year":"2018","journal-title":"PLoS One"},{"key":"B24","doi-asserted-by":"publisher","first-page":"e0224518","DOI":"10.1371\/journal.pone.0224518","article-title":"Genomic comparison of diverse Salmonella serovars isolated from swine.","volume":"14","author":"Gupta","year":"2019","journal-title":"PLoS One"},{"key":"B25","doi-asserted-by":"publisher","first-page":"1569","DOI":"10.3389\/FMICB.2020.01569","article-title":"Horizontal Gene Transfer as a Source of Conflict and Cooperation in Prokaryotes.","volume":"11","author":"Hall","year":"2020","journal-title":"Front. Microbiol."},{"key":"B26","doi-asserted-by":"publisher","first-page":"1235","DOI":"10.1089\/FPD.2009.0294","article-title":"Genetic and phenotypic characterization of the blaCMY gene from escherichia coli and salmonella enterica isolated from food-producing animals, humans, the environment, and retail meat.","volume":"6","author":"Heider","year":"2009","journal-title":"Foodborne Pathog. Dis."},{"key":"B27","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1186\/1471-2105-11-119","article-title":"Prodigal: Prokaryotic gene recognition and translation initiation site identification.","volume":"11","author":"Hyatt","year":"2010","journal-title":"BMC Bioinformatics"},{"key":"B28","doi-asserted-by":"publisher","first-page":"579","DOI":"10.3390\/ANTIBIOTICS10050579","article-title":"Prevalence of Antimicrobial Resistance (AMR) Salmonella spp. and Escherichia coli Isolated from Broilers in the East Coast of Peninsular Malaysia.","volume":"10","author":"Ibrahim","year":"2021","journal-title":"Antibiotics"},{"key":"B29","doi-asserted-by":"publisher","first-page":"e187","DOI":"10.1017\/S0950268819000724","article-title":"Epidemiologic patterns of human salmonella serotype diversity in the USA, 1996\u20132016.","volume":"147","author":"Judd","year":"2019","journal-title":"Epidemiol. Infect."},{"key":"B30","doi-asserted-by":"publisher","first-page":"1870","DOI":"10.1093\/molbev\/msw054","article-title":"MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.","volume":"33","author":"Kumar","year":"2016","journal-title":"Mol. Biol. Evol."},{"key":"B31","doi-asserted-by":"publisher","first-page":"3100","DOI":"10.1093\/nar\/gkm160","article-title":"RNAmmer: consistent and rapid annotation of ribosomal RNA genes.","volume":"35","author":"Lagesen","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"B32","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1093\/nar\/gkh152","article-title":"ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.","volume":"32","author":"Laslett","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"B33","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1007\/978-1-60327-853-9_3","article-title":"The Interplay of Homologous Recombination and Horizontal Gene Transfer in Bacterial Speciation.","volume":"532","author":"Lawrence","year":"2009","journal-title":"Methods Mol. Biol."},{"key":"B34","doi-asserted-by":"publisher","first-page":"110198","DOI":"10.1016\/J.FOODRES.2021.110198","article-title":"Prevalence and genomic investigation of Salmonella isolates recovered from animal food-chain in Xinjiang.","volume":"142","author":"Liu","year":"2021","journal-title":"China. Food Res. Int."},{"key":"B35","doi-asserted-by":"publisher","first-page":"32","DOI":"10.1016\/J.BSHEAL.2020.09.004","article-title":"Use of antimicrobials in food animals and impact of transmission of antimicrobial resistance on humans.","volume":"3","author":"Ma","year":"2021","journal-title":"Biosaf. Heal."},{"key":"B36","doi-asserted-by":"publisher","first-page":"1875865","DOI":"10.1155\/2016\/1875865","article-title":"Identification of genes coding aminoglycoside modifying enzymes in E. coli of UTI patients in India.","volume":"2016","author":"Mir","year":"2016","journal-title":"Sci. World J."},{"key":"B37","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/S42522-020-00016-5","article-title":"Evaluation of WGS-subtyping methods for epidemiological surveillance of foodborne salmonellosis.","volume":"21","author":"Mohammed","year":"2020","journal-title":"One Heal. Outlook"},{"key":"B38","doi-asserted-by":"publisher","first-page":"330","DOI":"10.1186\/s12879-019-3963-x","article-title":"Invasive Salmonella infections among children in Bintulu, Sarawak, Malaysian Borneo: A 6-year retrospective review.","volume":"19","author":"Mohan","year":"2019","journal-title":"BMC Infect. Dis."},{"key":"B39","doi-asserted-by":"publisher","first-page":"825","DOI":"10.2147\/IDR.S275090","article-title":"Occurrence and phenotypic characterization of multidrug-resistant bacterial pathogens isolated from patients in a public hospital in Mogadishu.","volume":"14","author":"Moussa","year":"2021","journal-title":"Somalia. Infect. Drug Resist."},{"key":"B40","doi-asserted-by":"publisher","first-page":"592","DOI":"10.3389\/fmicb.2018.00592","article-title":"Prediction of phenotypic antimicrobial resistance profiles from whole genome sequences of non-typhoidal Salmonella enterica.","volume":"9","author":"Neuert","year":"2018","journal-title":"Front. Microbiol."},{"key":"B41","doi-asserted-by":"publisher","first-page":"1277","DOI":"10.4314\/ahs.v15i4.29","article-title":"Occurrence of aminoglycoside-modifying enzymes genes (aac(6\u2032)-I and ant(2\u201d)-I) in clinical isolates of Pseudomonas aeruginosa from Southwest Nigeria.","volume":"15","author":"Odumosu","year":"2015","journal-title":"Afri. Heal. Sci."},{"key":"B42","first-page":"2379","article-title":"Outbreak caused by food-borne Salmonella enterica serovar Enteriditis in a residential school in Perak state. Malaysia in April 2016.","volume":"25","author":"Packierisamy","year":"2018","journal-title":"Int. Food Res. J."},{"key":"B43","doi-asserted-by":"publisher","first-page":"23","DOI":"10.3389\/FMICB.2018.00023","article-title":"Multiple Food-Animal-Borne Route in Transmission of Antibiotic-Resistant Salmonella Newport to Humans.","volume":"9","author":"Pan","year":"2018","journal-title":"Front. Microbiol."},{"key":"B44","first-page":"1","article-title":"Performance Standards for Antimicrobial Susceptibility Testing.","volume":"40","author":"Patel","year":"2016","journal-title":"Clin. Lab. Stand. Inst."},{"key":"B45","doi-asserted-by":"publisher","first-page":"187","DOI":"10.1089\/FPD.2017.2417","article-title":"A Meta-Analysis of Major Foodborne Pathogens in Chinese Food Commodities Between 2006 and 2016.","volume":"15","author":"Paudyal","year":"2018","journal-title":"Foodborne Pathog Dis."},{"key":"B46","doi-asserted-by":"publisher","first-page":"e0004857","DOI":"10.1371\/journal.pntd.0004857","article-title":"Invasive Non-typhoidal Salmonella Infections in Asia: Clinical Observations, Disease Outcome and Dominant Serovars from an Infectious Disease Hospital in Vietnam.","volume":"10","author":"Phu Huong Lan","year":"2016","journal-title":"PLoS Negl. Trop. Dis."},{"key":"B47","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/S12864-018-5137-4","article-title":"Whole genome sequencing analysis of multiple Salmonella serovars provides insights into phylogenetic relatedness, antimicrobial resistance, and virulence markers across humans, food animals and agriculture environmental sources.","volume":"191","author":"Pornsukarom","year":"2018","journal-title":"BMC Genomics."},{"key":"B48","doi-asserted-by":"publisher","first-page":"6545","DOI":"10.1128\/JB.187.18.6545-6555.2005","article-title":"Differences in gene content between Salmonella enterica serovar enteritidis isolates and comparison to closely related serovars gallinarum and Dublin.","volume":"187","author":"Porwollik","year":"2005","journal-title":"J. Bacteriol."},{"key":"B49","doi-asserted-by":"publisher","first-page":"22","DOI":"10.4314\/sokjvs.v13i1.4","article-title":"Sokoto Journal of Veterinary Sciences Evaluation of microbial contents of table eggs at retail outlets in Sokoto metropolis.","volume":"13","author":"Salihu","year":"2015","journal-title":"Nigeria. Sokoto J. Vet. Sci. J. Vet. Sci."},{"key":"B50","doi-asserted-by":"publisher","first-page":"134","DOI":"10.14196\/SJMI.V2I7.863","article-title":"Bacteriological quality of raw meat displayed for sale at Sokoto, Sokoto state, Nigeria.","volume":"2","author":"Salihu","year":"2013","journal-title":"Sci. J. Microbiol."},{"key":"B51","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1186\/s13099-019-0290-0","article-title":"Virulence factors, prevalence and potential transmission of extraintestinal pathogenic Escherichia coli isolated from different sources: Recent reports.","volume":"11","author":"Sarowska","year":"2019","journal-title":"Gut. Pathog."},{"key":"B52","doi-asserted-by":"publisher","first-page":"237","DOI":"10.3389\/FVETS.2017.00237","article-title":"Antimicrobial Resistance: Its Surveillance, Impact, and Alternative Management Strategies in Dairy Animals.","volume":"4","author":"Sharma","year":"2018","journal-title":"Front. Vet. Sci."},{"key":"B53","doi-asserted-by":"publisher","first-page":"e0230927","DOI":"10.1371\/JOURNAL.PONE.0230927","article-title":"Effect of specimen processing, growth supplement, and different metabolic population on Mycobacterium tuberculosis laboratory diagnosis.","volume":"15","author":"Srivastava","year":"2020","journal-title":"PLoS One"},{"key":"B54","doi-asserted-by":"publisher","first-page":"1312","DOI":"10.1016\/S1473-3099(19)30418-9","article-title":"The global burden of non-typhoidal salmonella invasive disease: a systematic analysis for the Global Burden of Disease Study 2017.","volume":"19","author":"Stanaway","year":"2019","journal-title":"Lancet Infect. Dis."},{"key":"B55","doi-asserted-by":"publisher","first-page":"e0176938","DOI":"10.1371\/journal.pone.0176938","article-title":"Genotypic and phenotypic characterization of multidrug resistant Salmonella Typhimurium and Salmonella Kentucky strains recovered from chicken carcasses.","volume":"12","author":"Tasmin","year":"2017","journal-title":"PLoS One"},{"key":"B56","doi-asserted-by":"publisher","first-page":"66","DOI":"10.1186\/s13099-017-0213-x","article-title":"Whole genome sequencing-based detection of antimicrobial resistance and virulence in non-typhoidal Salmonella enterica isolated from wildlife.","volume":"9","author":"Thomas","year":"2017","journal-title":"Gut Pathog."},{"key":"B57","doi-asserted-by":"crossref","first-page":"1888","DOI":"10.3382\/ps\/pew144","article-title":"Prevalence and Antibiotic Resistance of Salmonella Enteritidis and Salmonella Typhimurium in Raw Chicken Meat at Retail Markets in Malaysia.","volume":"95","author":"Thung","year":"2016","journal-title":"J. Poult. Sci."},{"key":"B58","doi-asserted-by":"publisher","first-page":"2697","DOI":"10.3389\/fmicb.2017.02697","article-title":"Prevalence, Virulence Genes and Antimicrobial Resistance Profiles of Salmonella Serovars from Retail Beef in Selangor, Malaysia.","volume":"8","author":"Thung","year":"2018","journal-title":"Front. Microbiol."},{"key":"B59","doi-asserted-by":"publisher","first-page":"e1000344","DOI":"10.1371\/journal.pgen.1000344","article-title":"Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.","volume":"5","author":"Touchon","year":"2009","journal-title":"PLoS Genet."},{"key":"B60","doi-asserted-by":"publisher","first-page":"307","DOI":"10.3389\/FPUBH.2017.00307","article-title":"Sensitivity, Specificity, and Predictive Values: Foundations, Pliabilities, and Pitfalls in Research and Practice.","volume":"5","author":"Trevethan","year":"2017","journal-title":"Front. Public Heal."},{"key":"B61","doi-asserted-by":"publisher","first-page":"170","DOI":"10.1016\/J.JGAR.2019.07.031","article-title":"Antibiotic use in food animals worldwide, with a focus on Africa: Pluses and minuses.","volume":"20","author":"Van","year":"2020","journal-title":"J. Glob. Antimicrob. Resist."},{"key":"B62","doi-asserted-by":"publisher","first-page":"985","DOI":"10.3389\/FMICB.2019.00985","article-title":"Antibiotic Resistance in Salmonella Typhimurium Isolates Recovered From the Food Chain Through National Antimicrobial Resistance Monitoring System Between 1996 and 2016.","volume":"10","author":"Wang","year":"2019","journal-title":"Front. Microbiol."},{"key":"B63","author":"Wayne","year":"2019","journal-title":"CLSI. Performance Standards for Antimicrobial Susceptibility Testing Performance Standards for Antimicrobial Susceptibility Testing."},{"key":"B64","doi-asserted-by":"publisher","first-page":"e0006718","DOI":"10.1371\/journal.pntd.0006718","article-title":"Epidemiology and antimicrobial resistance of invasive non-typhoidal Salmonellosis in rural Thailand from 2006-2014.","volume":"12","author":"Whistler","year":"2018","journal-title":"PLoS Negl. Trop. Dis."},{"key":"B65","doi-asserted-by":"publisher","first-page":"704636","DOI":"10.3389\/FMICB.2021.704636","article-title":"Genomic Investigation of Salmonella Isolates Recovered From a Pig Slaughtering Process in Hangzhou. China.","volume":"12","author":"Wu","year":"2021","journal-title":"Front. Microbiol."},{"key":"B66","doi-asserted-by":"publisher","first-page":"1016","DOI":"10.1016\/J.PSJ.2020.09.079","article-title":"Prevalence and antimicrobial resistance of Salmonella enterica subspecies enterica serovar Enteritidis isolated from broiler chickens in Shandong Province. China, 2013\u20132018.","volume":"100","author":"Yu","year":"2021","journal-title":"Poult. Sci."},{"key":"B67","doi-asserted-by":"publisher","first-page":"393","DOI":"10.1186\/s12917-020-02605-y","article-title":"Analysis of Salmonella enterica serovar Enteritidis isolates from chickens and chicken meat products in Malaysia using PFGE, and MLST.","volume":"16","author":"Zakaria","year":"2020","journal-title":"BMC Vet. Res."},{"key":"B68","doi-asserted-by":"publisher","first-page":"e01746","DOI":"10.1128\/AEM.01746-19","article-title":"SeqSero2: Rapid and improved salmonella serotype determination using whole-genome sequencing data.","volume":"85","author":"Zhang","year":"2019","journal-title":"Appl. Environ. Microbiol."}],"container-title":["Frontiers in Microbiology"],"original-title":[],"link":[{"URL":"https:\/\/www.frontiersin.org\/articles\/10.3389\/fmicb.2021.652642\/full","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,11,8]],"date-time":"2023-11-08T08:49:46Z","timestamp":1699433386000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.frontiersin.org\/articles\/10.3389\/fmicb.2021.652642\/full"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,8,31]]},"references-count":68,"alternative-id":["10.3389\/fmicb.2021.652642"],"URL":"https:\/\/doi.org\/10.3389\/fmicb.2021.652642","relation":{},"ISSN":["1664-302X"],"issn-type":[{"value":"1664-302X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2021,8,31]]},"article-number":"652642"}}