{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,19]],"date-time":"2026-08-19T22:05:07Z","timestamp":1787177107331,"version":"build-2736575974"},"reference-count":69,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2024,10,22]],"date-time":"2024-10-22T00:00:00Z","timestamp":1729555200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100008862","name":"China National Tobacco Corporation","doi-asserted-by":"publisher","award":["202051340024416 and SCYC202010"],"award-info":[{"award-number":["202051340024416 and SCYC202010"]}],"id":[{"id":"10.13039\/501100008862","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Microbiol."],"abstract":"<jats:p>Rhizosphere microbial communities strongly affect outbreaks of root-knot nematode (RKN) disease. However, little is known about the interactions among fungi, bacteria and RKN. The bacterial and fungal community compositions in the rhizospheres of four representative tobacco varieties, both resistant and susceptible to RKN, were characterized using 16S rRNA gene sequencing for bacteria and internal transcribed spacer gene sequencing for fungi. Our findings revealed that the fungi played crucial roles in facilitating the cross-kingdom and symbiotic fungal\u2013bacterial interactions to suppress RKN. Moreover, our investigation suggested <jats:italic>Microbacterium<\/jats:italic> as a potential microbial antagonist against RKN based on its enhanced presence in RKN-resistant tobacco genotypes, and the relative abundance of <jats:italic>Microbacterium<\/jats:italic> was 34.49% greater in the rhizosphere of resistant tobacco than that of susceptible tobacco significantly. Notably, the richness of fungal community enhanced tobacco\u2019s microbe-associated resistance to RKN through the positive regulation of the richness and diversity of bacterial community and the relative abundance of <jats:italic>Microbacterium<\/jats:italic>. This study underscores the critical role of the fungus\u2013dominated fungal\u2013bacterial community in bolstering tobacco resistance against RKN. The potential antagonistic role of <jats:italic>Microbacterium<\/jats:italic> presents promising avenues for innovative RKN management strategies.<\/jats:p>","DOI":"10.3389\/fmicb.2024.1415700","type":"journal-article","created":{"date-parts":[[2024,10,22]],"date-time":"2024-10-22T04:28:58Z","timestamp":1729571338000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":2,"title":["Using fungal\u2013bacterial community analysis to explore potential microbiomes to manage Meloidogyne incongnita"],"prefix":"10.3389","volume":"15","author":[{"given":"Qipeng","family":"Jiang","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yong","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jiamin","family":"Yu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jinfeng","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shiping","family":"Guo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dongyang","family":"Liu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiangwen","family":"Yu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lianqiang","family":"Jiang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gang","family":"Long","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Daojiang","family":"Xi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shuhong","family":"Chen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yue","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wei","family":"Ding","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1965","published-online":{"date-parts":[[2024,10,22]]},"reference":[{"key":"ref001","doi-asserted-by":"publisher","first-page":"217","DOI":"10.1046\/j.1364-3703.2003.00170.x","article-title":"Root-knot nematode parasitism and host response: molecular basis of a sophisticated interaction","volume":"4","author":"Abad","year":"2003","journal-title":"Molecular Plant Pathology"},{"key":"ref1","doi-asserted-by":"publisher","first-page":"2679","DOI":"10.1128\/AEM.03905-13","article-title":"Specific microbial attachment to root knot nematodes in suppressive soil","volume":"80","author":"Adam","year":"2014","journal-title":"Appl. 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