{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,16]],"date-time":"2026-10-16T14:51:15Z","timestamp":1792162275376,"version":"4.4.0"},"reference-count":116,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2025,5,27]],"date-time":"2025-05-27T00:00:00Z","timestamp":1748304000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Microbiol."],"abstract":"<jats:p>\n                    The conversion of forests to pastureland in the Amazon has increased over the years, resulting in significant impacts on ecosystem diversity, particularly on the soil microbiota. These changes affect the physical and biological properties of the soil, influencing the resistome and contributing to the selection and spread of antibiotic resistance genes (ARGs) in the soil environment. This study aimed to analyze the soil resistome under different managements in an Amazonian agrosystem. Soil samples were collected from the organic layer in forest and pasture areas within the municipality of S\u00e3o Miguel do Guam\u00e1, which included pastures managed with fertilization and those without the use of fertilizers. The samples underwent processing to extract genetic material and were sequenced using the Illumina platform. The sequences obtained were analyzed using bioinformatics tools to identify bacterial taxonomy and diversity. In addition, genetic annotation was performed using specialized databases to characterize functional genes, mobile elements, and resistance genes. The results showed changes in bacterial composition in pasture soils, where species such as\n                    <jats:italic>Staphylococcus aureus, Staphylococcus cohnii<\/jats:italic>\n                    , and\n                    <jats:italic>Bacillus coagulans<\/jats:italic>\n                    were more prevalent. In forest soils, differences in the composition of functional genes were detected, while soils without fertilizers exhibited a higher abundance of transposable elements. In addition, antibiotic resistance genes, such as macrolides, tetracyclines, aminoglycosides, among others, were more abundant in pasture soils.\n                  <\/jats:p>","DOI":"10.3389\/fmicb.2025.1508157","type":"journal-article","created":{"date-parts":[[2025,5,27]],"date-time":"2025-05-27T01:23:05Z","timestamp":1748308985000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":4,"title":["Characterization of antibiotic resistance genes in soils from agroecosystems of the Brazilian Amazon"],"prefix":"10.3389","volume":"16","author":[{"given":"Taynara Cristina Santos","family":"Tavares","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"L\u00edvia Freitas da Silva","family":"Pinto","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Oscar Victor","family":"Cardenas-Alegria","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Carlos William Dias","family":"Dantas","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sandro Patroca da","family":"Silva","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ana Cec\u00edlia","family":"Ribeiro Cruz","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"An\u00edbal Coutinho","family":"do R\u00eago","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Herv\u00e9 Louis Ghislain","family":"Rogez","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rommel Thiago Juca","family":"Ramos","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Cristian","family":"Faturi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Adriana Ribeiro Carneiro","family":"Nunes","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1965","published-online":{"date-parts":[[2025,5,27]]},"reference":[{"key":"B1","doi-asserted-by":"publisher","first-page":"1","DOI":"10.7717\/peerj.11184","article-title":"Soil microbial diversity in organic and non-organic pasture systems","volume":"9","author":"Acharya","year":"2021","journal-title":"PeerJ"},{"key":"B2","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/978-981-16-2074-4_1","article-title":"\u201cInduced Genotoxicity and Oxidative Stress in Plants: An Overview,\u201d","volume-title":"Induced Genotoxicity and Oxidative Stress in Plants","author":"Afshana","year":"2021"},{"key":"B3","doi-asserted-by":"publisher","first-page":"690","DOI":"10.1093\/nar\/gkac920","article-title":"CARD 2023: expanded curation, support for machine learning, and resistome prediction at the comprehensive antibiotic resistance database","volume":"51","author":"Alcock","year":"2023","journal-title":"Nucleic Acids Res."},{"key":"B4","doi-asserted-by":"publisher","first-page":"19741","DOI":"10.34119\/bjhrv6n5-028","article-title":"Resist\u00eancia bacteriana: uma amea\u00e7a global","volume":"6","author":"Almeida","year":"2023","journal-title":"Braz. 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