{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,17]],"date-time":"2026-10-17T21:16:12Z","timestamp":1792271772281,"version":"4.4.0"},"reference-count":46,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2025,12,2]],"date-time":"2025-12-02T00:00:00Z","timestamp":1764633600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Microbiol."],"abstract":"\n Background<\/jats:title>\n \n Staphylococcal mastitis is a common disease of small ruminants causing major economic losses. The problem is particularly significant in the rural areas of the Mediterranean region, where almost two thirds of the global sheep and a quarter of the global goat milk are produced. This study aimed to gain insight into the genotypes, antimicrobial resistance (AMR) profiles and virulence factors of\n Staphylococcus aureus<\/jats:italic>\n isolated from clinical mastitis in small ruminants\u2019 farms from different 25 dairy herds in six different provinces in Sardinia, Italy between December 2021 and May 2022.\n <\/jats:p>\n <\/jats:sec>\n \n Methods<\/jats:title>\n \n Thirty- two\n S. aureus<\/jats:italic>\n were phenotypically identified and confirmed by real-time PCR. Whole-genome sequencing (WGS) was conducted and the sequence data were analyzed to reveal the genetic diversity, AMR markers and virulence genes to draw a conclusion for a current situation of small ruminants\u2019 clinical mastitis in dairy herds in the region and the potential public health risk. Furthermore, the phylogenetic relations between\n S. aureus<\/jats:italic>\n strains within one farm and from various farms was analyzed.\n <\/jats:p>\n <\/jats:sec>\n \n Results<\/jats:title>\n \n All isolates proved to be phenotypically Methicillin-susceptible\n S. aureus<\/jats:italic>\n (MSSA), and none of them harbored\n mec<\/jats:italic>\n A\/C genes. The antimicrobial resistance against Tetracycline and Erythromycin were 15.62% and 3.12%, respectively. The isolates were assigned to ten sequence types in addition to five different clonal complexes using multilocus sequence typing (MLST). Sequence types ST133 (46.9%) and ST700 (21.9%) were the dominant types, and the majority of isolates were assigned to either CC133 (56.25%) or CC130 (34.4%). Twelve different\n spa<\/jats:italic>\n -types were identified among isolates, while six isolates were not assigned to known\n spa<\/jats:italic>\n -types. The dominant\n spa<\/jats:italic>\n -type was t1773 (18.75%) which is known to be associated with CC130. All Tetracycline-resistant isolates harbored\n tet<\/jats:italic>\n genes. The only Erythromycin-resistant isolate carried the\n erm<\/jats:italic>\n (T) gene. The leucocidin genes\n luk<\/jats:italic>\n F-PV (P83)\/\n lukM<\/jats:italic>\n were detected in 20 isolates (62.5%), while one isolate (ST522) carried a chimeric leukocidin.\n <\/jats:p>\n <\/jats:sec>\n \n Conclusion<\/jats:title>\n \n In conclusion, this study showed a considerable genetic diversity of\n S. aureus<\/jats:italic>\n isolated from sheep and goat mastitis in Sardinia, Italy, and the prominent sensitivity to most of antimicrobial agents relevant for mastitis treatment. These findings inform about the local mastitis control strategies and highlight a low immediate public health risk from antimicrobial resistance in this setting.\n <\/jats:p>\n <\/jats:sec>","DOI":"10.3389\/fmicb.2025.1661122","type":"journal-article","created":{"date-parts":[[2025,12,2]],"date-time":"2025-12-02T06:27:19Z","timestamp":1764656839000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":5,"title":["Genomic characterization of Staphylococcus aureus isolated from mastitis in small ruminants in Sardinia, Italy"],"prefix":"10.3389","volume":"16","author":[{"given":"Amira A.","family":"Moawad","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Simone","family":"Dore","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Stefano","family":"Lollai","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hosny","family":"El-Adawy","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hanka","family":"Brangsch","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Stefan","family":"Monecke","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ralf","family":"Ehricht","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sascha D.","family":"Braun","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Heinrich","family":"Neubauer","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Herbert","family":"Tomaso","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1965","published-online":{"date-parts":[[2025,12,2]]},"reference":[{"key":"B1","unstructured":"Andrews\n S.\n \n \n A quality control tool for high throughput sequence data\n \n 2018"},{"key":"B2","doi-asserted-by":"publisher","first-page":"108749","DOI":"10.1016\/j.vetmic.2020.108749","article-title":"Isolation and characterization of Staphylococcus aureus and methicillin-resistant Staphylococcus aureus (MRSA) from milk of dairy goats under low-input farm management in Greece.","volume":"247","author":"Angelidis","year":"2020","journal-title":"Vet. 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