{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,28]],"date-time":"2026-10-28T00:47:46Z","timestamp":1793148466846,"version":"4.5.0"},"reference-count":269,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2026,1,13]],"date-time":"2026-01-13T00:00:00Z","timestamp":1768262400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Microbiol."],"abstract":"<jats:p>\n                    Fluoroquinolones (FQs) remain important treatments for many Gram-negative and some Gram-positive infections, but rapid resistance development is steadily reducing their clinical usefulness. This review integrates biological and epidemiologic evidence through a One Health perspective focused on the ESKAPE group:\n                    <jats:italic>Enterococcus faecium<\/jats:italic>\n                    ,\n                    <jats:italic>Staphylococcus aureus<\/jats:italic>\n                    ,\n                    <jats:italic>Klebsiella pneumoniae<\/jats:italic>\n                    ,\n                    <jats:italic>Acinetobacter baumannii<\/jats:italic>\n                    ,\n                    <jats:italic>Pseudomonas aeruginosa<\/jats:italic>\n                    , and\n                    <jats:italic>Enterobacter<\/jats:italic>\n                    spp. At the molecular level, resistance often begins with changes in quinolone-resistance determining regions of DNA gyrase and topoisomerase IV, followed by spread through plasmid-mediated mechanisms including\n                    <jats:italic>qnr<\/jats:italic>\n                    ,\n                    <jats:italic>aac(6\u2032)-Ib-cr<\/jats:italic>\n                    ,\n                    <jats:italic>qepA<\/jats:italic>\n                    , and\n                    <jats:italic>oqxAB<\/jats:italic>\n                    . Species-specific efflux pumps such as NorA, AcrAB\u2013TolC, and OqxAB, along with outer membrane and porin alterations, further contribute to resistance. Co-selection on mobile elements, including IncX, IncF, and IncL plasmids that may also carry ESBL or AmpC genes, enhances dissemination. Extrapatient reservoirs, including external hospitals, veterinary medicine, food-animal production, and contaminated water, sustain selection pressure and support horizontal transmission. Rising minimum inhibitory concentrations (MICs) are diminishing the reliability of empiric FQ therapy. Pharmacokinetics and pharmacodynamics are central to this trend; suboptimal exposure, such as ciprofloxacin AUC\/MIC below 125 in Gram-negative infections, increases the time within the mutant-selection window and favors first-step mutants. Mechanism-based strategies include target-attaining dosing, early optimization of therapy, use of combinations that address efflux or permeability barriers, and stewardship guided by local MIC distributions. Emerging priorities include AI-based prediction of resistance trajectories, efflux and plasmid-transfer inhibitors, and phage or nanoparticle systems designed to reduce pathogen burden, disrupt biofilms, generate reactive oxygen species, or deliver site-directed therapy. Integration of rapid diagnostics will support these efforts and help preserve FQ effectiveness.\n                  <\/jats:p>","DOI":"10.3389\/fmicb.2025.1719066","type":"journal-article","created":{"date-parts":[[2026,1,13]],"date-time":"2026-01-13T06:31:47Z","timestamp":1768285907000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":14,"title":["Fluoroquinolone resistance in ESKAPE pathogens: evolutionary pathways, one health transmission, and clinical surveillance"],"prefix":"10.3389","volume":"16","author":[{"given":"Ayman","family":"Elbehiry","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eman","family":"Marzouk","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Adil","family":"Abalkhail","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1965","published-online":{"date-parts":[[2026,1,13]]},"reference":[{"key":"ref1","doi-asserted-by":"publisher","first-page":"957","DOI":"10.1007\/s00228-020-02873-5","article-title":"Population pharmacokinetics and target attainment of ciprofloxacin in critically ill patients","volume":"76","author":"Abdulla","year":"2020","journal-title":"Eur. J. Clin. Pharmacol."},{"key":"ref2","doi-asserted-by":"publisher","first-page":"1131","DOI":"10.1038\/s41467-022-28819-2","article-title":"Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene Bla NDM","volume":"13","author":"Acman","year":"2022","journal-title":"Nat. Commun."},{"key":"ref3","doi-asserted-by":"publisher","first-page":"104894","DOI":"10.1016\/j.jddst.2023.104894","article-title":"Controlled delivery of ciprofloxacin using zirconium-based MOFs and poly-caprolactone composites","volume":"88","author":"Aden","year":"2023","journal-title":"J. Drug Deliv. Sci. Technol."},{"key":"ref4","doi-asserted-by":"publisher","first-page":"335","DOI":"10.1128\/AAC.43.2.335","article-title":"Effects of NorA inhibitors on in vitro antibacterial activities and postantibiotic effects of levofloxacin, ciprofloxacin, and norfloxacin in genetically related strains of Staphylococcus aureus","volume":"43","author":"Aeschlimann","year":"1999","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref5","doi-asserted-by":"publisher","first-page":"1591","DOI":"10.3389\/fmicb.2016.01591","article-title":"Fitness cost of fluoroquinolone resistance in clinical isolates of Pseudomonas aeruginosa differs by type III secretion genotype","volume":"7","author":"Agnello","year":"2016","journal-title":"Front. Microbiol."},{"key":"ref6","doi-asserted-by":"publisher","first-page":"e0297921","DOI":"10.1371\/journal.pone.0297921","article-title":"Global antimicrobial resistance and use surveillance system (GLASS 2022): investigating the relationship between antimicrobial resistance and antimicrobial consumption data across the participating countries","volume":"19","author":"Ajulo","year":"2024","journal-title":"PLoS One"},{"key":"ref7","doi-asserted-by":"publisher","first-page":"177","DOI":"10.1089\/mdr.2016.0033","article-title":"Prevalence of plasmid-mediated quinolone resistance genes in clinical enterobacteria from Argentina","volume":"23","author":"Albornoz","year":"2017","journal-title":"Microb. Drug Resist."},{"key":"ref8","doi-asserted-by":"publisher","first-page":"1565","DOI":"10.1021\/bi5000564","article-title":"Mechanism of quinolone action and resistance","volume":"53","author":"Aldred","year":"2014","journal-title":"Biochemistry"},{"key":"ref9","doi-asserted-by":"publisher","first-page":"1328","DOI":"10.3390\/biology11091328","article-title":"Drug efflux pump inhibitors: a promising approach to counter multidrug resistance in gram-negative pathogens by targeting AcrB protein from AcrAB-TolC multidrug efflux pump from Escherichia coli","volume":"11","author":"Alenazy","year":"2022","journal-title":"Biology"},{"key":"ref10","doi-asserted-by":"publisher","first-page":"7400","DOI":"10.1038\/s41598-025-91516-9","article-title":"Wastewater based genomic surveillance key to population level monitoring of AmpC\/ESBL producing Escherichia coli","volume":"15","author":"Al-Mustapha","year":"2025","journal-title":"Sci. Rep."},{"key":"ref11","doi-asserted-by":"publisher","first-page":"1441","DOI":"10.3390\/antibiotics12091441","article-title":"The significance of Bayesian pharmacokinetics in dosing for critically ill patients: a primer for clinicians using vancomycin as an example","volume":"12","author":"Alnezary","year":"2023","journal-title":"Antibiotics"},{"key":"ref12","doi-asserted-by":"publisher","first-page":"2793","DOI":"10.1128\/AAC.45.10.2793-2797.2001","article-title":"Pharmacodynamics of fluoroquinolones against Streptococcus pneumoniae in patients with community-acquired respiratory tract infections","volume":"45","author":"Ambrose","year":"2001","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref13","doi-asserted-by":"publisher","first-page":"93","DOI":"10.22038\/IJBMS.2022.67095.14714","article-title":"Relationship of OqxAB efflux pump to antibiotic resistance, mainly fluoroquinolones in Klebsiella pneumoniae, isolated from hospitalized patients","volume":"26","author":"Amereh","year":"2023","journal-title":"Iran. J. Basic Med. Sci."},{"key":"ref14","doi-asserted-by":"publisher","first-page":"e0261970","DOI":"10.1371\/journal.pone.0261970","article-title":"High prevalence of plasmid-mediated quinolone resistance (PMQR) among E. coli from aquatic environments in Bangladesh","volume":"16","author":"Amin","year":"2021","journal-title":"PLoS One"},{"key":"ref15","doi-asserted-by":"publisher","first-page":"1254896","DOI":"10.3389\/fmicb.2023.1254896","article-title":"Enterococcus species: insights into antimicrobial resistance and whole-genome features of isolates recovered from livestock and raw meat in Ghana","volume":"14","author":"Amuasi","year":"2023","journal-title":"Front. Microbiol."},{"key":"ref16","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1016\/S0924-8579(00)00192-8","article-title":"The fluoroquinolone antibacterials: past, present and future perspectives","volume":"16","author":"Appelbaum","year":"2000","journal-title":"Int. J. Antimicrob. Agents"},{"key":"ref17","doi-asserted-by":"publisher","first-page":"2765","DOI":"10.2147\/IDR.S402894","article-title":"Epidemiology and multidrug resistance of Pseudomonas aeruginosa and Acinetobacter baumanni isolated from clinical samples in Ethiopia","volume":"16","author":"Araya","year":"2023","journal-title":"Infect. Drug Resist."},{"key":"ref18","doi-asserted-by":"publisher","first-page":"e0302352","DOI":"10.1371\/journal.pone.0302352","article-title":"Mutational alterations in the QRDR regions associated with fluoroquinolone resistance in Pseudomonas aeruginosa of clinical origin from Savar, Dhaka","volume":"20","author":"Arefin","year":"2025","journal-title":"PLoS One"},{"key":"ref19","doi-asserted-by":"publisher","first-page":"e00050-19","DOI":"10.1128\/CMR.00050-19","article-title":"Evolutionary pathways and trajectories in antibiotic resistance","volume":"34","author":"Baquero","year":"2021","journal-title":"Clin. Microbiol. Rev."},{"key":"ref20","doi-asserted-by":"publisher","first-page":"2145","DOI":"10.1093\/jac\/dkx146","article-title":"Global epidemiology of CTX-M \u03b2-lactamases: temporal and geographical shifts in genotype","volume":"72","author":"Bevan","year":"2017","journal-title":"J. Antimicrob. Chemother."},{"key":"ref21","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1093\/jac\/dku340","article-title":"Differential contribution of AcrAB and OqxAB efflux pumps to multidrug resistance and virulence in Klebsiella pneumoniae","volume":"70","author":"Bialek-Davenet","year":"2015","journal-title":"J. Antimicrob. Chemother."},{"key":"ref22","doi-asserted-by":"publisher","first-page":"4874","DOI":"10.1021\/jm501881c","article-title":"Origins of the quinolone class of antibacterials: an expanded \u201cdiscovery story\u201d miniperspective","volume":"58","author":"Bisacchi","year":"2015","journal-title":"J. Med. Chem."},{"key":"ref23","doi-asserted-by":"publisher","first-page":"1321","DOI":"10.1021\/acsestwater.4c01073","article-title":"Extended-spectrum beta lactamase-producing E. coli in freshwater lakes along an anthropogenic impact gradient","volume":"5","author":"Bivins","year":"2025","journal-title":"ACS ES&T Water"},{"key":"ref24","doi-asserted-by":"publisher","first-page":"280","DOI":"10.1556\/1886.2024.00070","article-title":"Correlation of RND efflux pump expression and AdeRS mutations in tigecycline-resistant Acinetobacter baumannii from Thai clinical isolates","volume":"14","author":"Boonsilp","year":"2024","journal-title":"Eur. J. Microbiol. Immunol."},{"key":"ref25","doi-asserted-by":"publisher","first-page":"948","DOI":"10.3390\/ph18070948","article-title":"Trends in antimicrobial resistance of Acinetobacter baumannii and Pseudomonas aeruginosa from bloodstream infections: an eight-year study in a Romanian tertiary hospital","volume":"18","author":"Borcan","year":"2025","journal-title":"Pharmaceuticals"},{"key":"ref26","doi-asserted-by":"publisher","first-page":"763","DOI":"10.1186\/s12879-024-09605-5","article-title":"Phenotypic and genotypic assessment of fluoroquinolones and aminoglycosides resistances in Pseudomonas aeruginosa collected from Minia hospitals, Egypt during COVID-19 pandemic","volume":"24","author":"Boushra","year":"2024","journal-title":"BMC Infect. Dis."},{"key":"ref27","doi-asserted-by":"publisher","first-page":"e0133727","DOI":"10.1371\/journal.pone.0133727","article-title":"Genomic analysis of the emergence and rapid global dissemination of the clonal group 258 Klebsiella pneumoniae pandemic","volume":"10","author":"Bowers","year":"2015","journal-title":"PLoS One"},{"key":"ref28","doi-asserted-by":"publisher","first-page":"502","DOI":"10.3390\/antibiotics13060502","article-title":"Implications of artificial intelligence in addressing antimicrobial resistance: innovations, global challenges, and healthcare\u2019s future","volume":"13","author":"Branda","year":"2024","journal-title":"Antibiotics"},{"key":"ref29","doi-asserted-by":"publisher","first-page":"507","DOI":"10.1139\/cjm-2024-0032","article-title":"Antimicrobial resistance in Klebsiella pneumoniae: an overview of common mechanisms and a current Canadian perspective","volume":"70","author":"Braun","year":"2024","journal-title":"Can. J. Microbiol."},{"key":"ref30","doi-asserted-by":"publisher","first-page":"101147","DOI":"10.1016\/j.drup.2024.101147","article-title":"Mechanism of staphylococcal resistance to clinically relevant antibiotics","volume":"77","author":"Brdov\u00e1","year":"2024","journal-title":"Drug Resist. Updat."},{"key":"ref31","doi-asserted-by":"publisher","first-page":"1361","DOI":"10.1128\/AAC.01581-12","article-title":"Quantitative contributions of target alteration and decreased drug accumulation to Pseudomonas aeruginosa fluoroquinolone resistance","volume":"57","author":"Bruchmann","year":"2013","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref32","doi-asserted-by":"crossref","DOI":"10.1128\/mBio.02303-17","article-title":"Clinically relevant plasmid-host interactions indicate that transcriptional and not genomic modifications ameliorate fitness costs of Klebsiella pneumoniae carbapenemase-carrying plasmids","volume-title":"MBio","author":"Buckner","year":"2018"},{"key":"ref33","doi-asserted-by":"publisher","first-page":"1767","DOI":"10.1128\/AAC.02676-15","article-title":"Evolution of Pseudomonas aeruginosa antimicrobial resistance and fitness under low and high mutation rates","volume":"60","author":"Cabot","year":"2016","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref34","doi-asserted-by":"publisher","first-page":"1600","DOI":"10.1093\/jac\/dkac084","article-title":"Resistance mechanisms and molecular epidemiology of Pseudomonas aeruginosa strains from patients with bronchiectasis","volume":"77","author":"Cabrera","year":"2022","journal-title":"J. Antimicrob. Chemother."},{"key":"ref35","doi-asserted-by":"publisher","first-page":"2033","DOI":"10.1128\/JCM.02229-08","article-title":"Detection of plasmid-mediated quinolone resistance genes in clinical isolates of Enterobacter spp. in Spain","volume":"47","author":"Cano","year":"2009","journal-title":"J. Clin. Microbiol."},{"key":"ref36","doi-asserted-by":"publisher","first-page":"2871","DOI":"10.1128\/AAC.00120-14","article-title":"Comparative genomic analysis of KPC-encoding pKpQIL-like plasmids and their distribution in New Jersey and New York hospitals","volume":"58","author":"Chen","year":"2014","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref37","doi-asserted-by":"publisher","first-page":"e03000-23","DOI":"10.1128\/spectrum.03000-23","article-title":"Distribution and genetic characterization of fluoroquinolone resistance gene qnr among Salmonella strains from chicken in China","volume":"12","author":"Chen","year":"2024","journal-title":"Microbiol. Spectr."},{"key":"ref38","doi-asserted-by":"publisher","first-page":"3861","DOI":"10.1128\/AAC.00456-06","article-title":"Complete nucleotide sequence of pK245, a 98-kilobase plasmid conferring quinolone resistance and extended-spectrum-\u03b2-lactamase activity in a clinical Klebsiella pneumoniae isolate","volume":"50","author":"Chen","year":"2006","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref39","doi-asserted-by":"publisher","first-page":"3423","DOI":"10.1128\/AAC.06191-11","article-title":"Prevalence of qnr, aac (6\u2032)-Ib-cr, qepA, and oqxAB in Escherichia coli isolates from humans, animals, and the environment","volume":"56","author":"Chen","year":"2012","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref40","doi-asserted-by":"publisher","first-page":"e151","DOI":"10.1016\/S2666-5247(23)00297-5","article-title":"Antibiotic resistance determination using Enterococcus faecium whole-genome sequences: a diagnostic accuracy study using genotypic and phenotypic data","volume":"5","author":"Coll","year":"2024","journal-title":"Lancet Microbe."},{"key":"ref41","doi-asserted-by":"publisher","first-page":"3071","DOI":"10.1021\/acsinfecdis.4c00438","article-title":"Interactions between zoliflodacin and Neisseria gonorrhoeae gyrase and topoisomerase IV: enzymological basis for cellular targeting","volume":"10","author":"Collins","year":"2024","journal-title":"ACS Infect. Dis."},{"key":"ref42","doi-asserted-by":"publisher","first-page":"2421","DOI":"10.1128\/AAC.03926-14","article-title":"Dissemination of high-risk clones of extensively drug-resistant Pseudomonas aeruginosa in Colombia","volume":"59","author":"Correa","year":"2015","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref43","doi-asserted-by":"publisher","first-page":"947","DOI":"10.1128\/AAC.01388-10","article-title":"Efflux-mediated antibiotic resistance in Acinetobacter spp","volume":"55","author":"Coyne","year":"2011","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref44","doi-asserted-by":"publisher","first-page":"828","DOI":"10.3390\/antibiotics11060828","article-title":"Companion animals as potential reservoirs of antibiotic resistant diarrheagenic Escherichia coli in Shandong, China","volume":"11","author":"Cui","year":"2022","journal-title":"Antibiotics"},{"key":"ref45","doi-asserted-by":"publisher","first-page":"976273","DOI":"10.1155\/2012\/976273","article-title":"Global fluoroquinolone resistance epidemiology and implictions for clinical use","volume":"2012","author":"Dalhoff","year":"2012","journal-title":"Interdiscipl. Perspect. Infect. Dis."},{"key":"ref46","doi-asserted-by":"publisher","first-page":"557","DOI":"10.1128\/AAC.00732-07","article-title":"AdeIJK, a resistance-nodulation-cell division pump effluxing multiple antibiotics in Acinetobacter baumannii","volume":"52","author":"Damier-Piolle","year":"2008","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref47","doi-asserted-by":"publisher","first-page":"000964","DOI":"10.1099\/mgen.0.000964","article-title":"RND pumps across the genus Acinetobacter: AdeIJK is the universal efflux pump","volume":"9","author":"Darby","year":"2023","journal-title":"Microb. Genom."},{"key":"ref48","doi-asserted-by":"publisher","first-page":"25043","DOI":"10.1073\/pnas.2003407117","article-title":"Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae","volume":"117","author":"David","year":"2020","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"ref49","doi-asserted-by":"crossref","first-page":"106166","DOI":"10.1016\/j.ijantimicag.2020.106166","article-title":"Pharmacokinetic\/pharmacodynamic target attainment of ciprofloxacin in adult patients on general wards with adequate and impaired renal function","volume":"56","author":"De Vroom","year":"2020","journal-title":"Int. J. Antimicrob. Agents"},{"key":"ref50","doi-asserted-by":"publisher","first-page":"106196","DOI":"10.1016\/j.ijantimicag.2020.106196","article-title":"Pseudomonas aeruginosa epidemic high-risk clones and their association with horizontally-acquired \u03b2-lactamases: 2020 update","volume":"56","author":"Del Barrio-Tofi\u00f1o","year":"2020","journal-title":"Int. J. Antimicrob. Agents"},{"key":"ref51","doi-asserted-by":"publisher","first-page":"808","DOI":"10.1016\/j.bbapap.2008.11.005","article-title":"Outer membrane permeability and antibiotic resistance","volume":"1794","author":"Delcour","year":"2009","journal-title":"Biochim. Biophys. Acta"},{"key":"ref52","doi-asserted-by":"publisher","first-page":"19","DOI":"10.1128\/aac.00355-19","article-title":"The microbiology of bloodstream infection: 20-year trends from the SENTRY antimicrobial surveillance program","volume":"63","author":"Diekema","year":"2019","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref53","doi-asserted-by":"publisher","first-page":"001387","DOI":"10.1099\/mic.0.001387","article-title":"Staph wars: the antibiotic pipeline strikes back","volume":"169","author":"Douglas","year":"2023","journal-title":"Microbiology"},{"key":"ref54","doi-asserted-by":"publisher","first-page":"2241","DOI":"10.1093\/jac\/dkx141","article-title":"Major role of pKpQIL-like plasmids in the early dissemination of KPC-type carbapenemases in the UK","volume":"72","author":"Doumith","year":"2017","journal-title":"J. Antimicrob. Chemother."},{"key":"ref55","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1093\/jac\/dkg269","article-title":"The mutant selection window and antimicrobial resistance","volume":"52","author":"Drlica","year":"2003","journal-title":"J. Antimicrob. Chemother."},{"key":"ref56","doi-asserted-by":"publisher","first-page":"681","DOI":"10.1086\/511642","article-title":"Mutant selection window hypothesis updated","volume":"44","author":"Drlica","year":"2007","journal-title":"Clin. Infect. Dis."},{"key":"ref57","doi-asserted-by":"publisher","first-page":"1458","DOI":"10.1021\/acsinfecdis.4c00091","article-title":"Extending the potency and lifespan of antibiotics: inhibitors of gram-negative bacterial efflux pumps","volume":"10","author":"Duffey","year":"2024","journal-title":"ACS Infect. Dis."},{"key":"ref58","doi-asserted-by":"publisher","first-page":"855","DOI":"10.3390\/antibiotics9120855","article-title":"The role of efflux pumps in the transition from low-level to clinical antibiotic resistance","volume":"9","author":"Ebbensgaard","year":"2020","journal-title":"Antibiotics."},{"key":"ref59","doi-asserted-by":"publisher","first-page":"947","DOI":"10.1128\/AAC.43.4.947","article-title":"Alterations in GyrA and ParC associated with fluoroquinolone resistance in Enterococcus faecium","volume":"43","author":"el Amin","year":"1999","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref60","doi-asserted-by":"publisher","first-page":"40","DOI":"10.1016\/j.colsurfb.2017.09.003","article-title":"Fucoidan coated ciprofloxacin loaded chitosan nanoparticles for the treatment of intracellular and biofilm infections of Salmonella","volume":"160","author":"Elbi","year":"2017","journal-title":"Colloids Surf. B Biointerfaces"},{"key":"ref61","doi-asserted-by":"publisher","first-page":"103","DOI":"10.1186\/s12941-024-00761-9","article-title":"Porin expression in clinical isolates of Klebsiella pneumoniae: a comparison of SDS-PAGE and MALDI-TOF\/MS and limitations of whole genome sequencing analysis","volume":"23","author":"El\u00edas-L\u00f3pez","year":"2024","journal-title":"Ann. Clin. Microbiol. Antimicrob."},{"key":"ref62","doi-asserted-by":"publisher","first-page":"123","DOI":"10.22037\/ijpr.2010.628","article-title":"Quinolones: recent structural and clinical developments","volume":"3","author":"Emami","year":"2005","journal-title":"Iran. J. Pharm. Res."},{"key":"ref63","doi-asserted-by":"publisher","first-page":"13","DOI":"10.1093\/jac\/dkg208","article-title":"The quinolones: decades of development and use","volume":"51","author":"Emmerson","year":"2003","journal-title":"J. Antimicrob. Chemother."},{"key":"ref64","volume-title":"Antimicrobial resistance in the EU\/EEA (EARS-net): Annual epidemiological report for 2024","year":"2025"},{"key":"ref65","doi-asserted-by":"publisher","first-page":"e04872","DOI":"10.2903\/j.efsa.2017.4872","article-title":"ECDC\/EFSA\/EMA second joint report on the integrated analysis of the consumption of antimicrobial agents and occurrence of antimicrobial resistance in bacteria from humans and food-producing animals: joint interagency antimicrobial consumption and resistance analysis (JIACRA) report","volume":"15","year":"2017","journal-title":"EFSA J."},{"key":"ref66","doi-asserted-by":"publisher","first-page":"e06712","DOI":"10.2903\/j.efsa.2021.6712","article-title":"Third joint inter-agency report on integrated analysis of consumption of antimicrobial agents and occurrence of antimicrobial resistance in bacteria from humans and food-producing animals in the EU\/EEA: JIACRA III (2016\u20132018)","volume":"19","year":"2021","journal-title":"EFSA J."},{"key":"ref67","doi-asserted-by":"publisher","first-page":"e8589","DOI":"10.2903\/j.efsa.2024.8589","article-title":"Antimicrobial consumption and resistance in bacteria from humans and food-producing animals: fourth joint inter-agency report on integrated analysis of antimicrobial agent consumption and occurrence of antimicrobial resistance in bacteria from humans and food-producing animals in the EU\/EEA (JIACRA IV, 2019\u20132021)","volume":"22","year":"2024","journal-title":"EFSA J."},{"key":"ref68","year":"2021"},{"key":"ref69","volume-title":"Analysis of antimicrobial consumption and resistance (JIACRA reports)","year":"2024"},{"key":"ref70","year":"2023"},{"key":"ref71","year":"2024"},{"key":"ref72","doi-asserted-by":"publisher","first-page":"4214","DOI":"10.1128\/AAC.00663-12","article-title":"Impact of antibiotic MIC on infection outcome in patients with susceptible gram-negative bacteria: a systematic review and meta-analysis","volume":"56","author":"Falagas","year":"2012","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref73","doi-asserted-by":"publisher","first-page":"1179312","DOI":"10.3389\/fmicb.2023.1179312","article-title":"Antimicrobial resistance and machine learning: past, present, and future","volume":"14","author":"Farhat","year":"2023","journal-title":"Front. Microbiol."},{"key":"ref74","doi-asserted-by":"publisher","first-page":"1604","DOI":"10.1128\/AAC.47.5.1604-1613.2003","article-title":"In vitro pharmacodynamic evaluation of the mutant selection window hypothesis using four fluoroquinolones against Staphylococcus aureus","volume":"47","author":"Firsov","year":"2003","journal-title":"Antimicrob. 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Med."},{"key":"ref218","doi-asserted-by":"publisher","first-page":"363","DOI":"10.3390\/antibiotics13040363","article-title":"Genomic epidemiology of C2\/H30Rx and C1-M27 subclades of Escherichia coli ST131 isolates from clinical blood samples in Hungary","volume":"13","author":"T\u00f3th","year":"2024","journal-title":"Antibiotics"},{"key":"ref219","doi-asserted-by":"crossref","first-page":"e00460-25","DOI":"10.1128\/aac.00460-25","article-title":"NorA and Tet38 efflux pumps enable Staphylococcus aureus survival in the cystic fibrosis airway environment, resistance to antibiotics, and coinfection with Pseudomonas aeruginosa","volume":"69","author":"Truong-Bolduc","year":"2025","journal-title":"Antimicrob. 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Microbiol."},{"key":"ref225","doi-asserted-by":"publisher","first-page":"e000077","DOI":"10.1099\/acmi.0.000077","article-title":"Prevalence and mechanisms of fluoroquinolone-resistant Escherichia coli among sheltered companion animals","volume":"2","author":"Umeda","year":"2020","journal-title":"Access Microbiol."},{"key":"ref226","doi-asserted-by":"publisher","first-page":"2863","DOI":"10.2147\/IDR.S262493","article-title":"Genotypic to phenotypic resistance discrepancies identified involving \u03b2-lactamase genes, Bla KPC, Bla IMP, Bla NDM-1, and Bla VIM in uropathogenic Klebsiella pneumoniae","volume":"13","author":"Urmi","year":"2020","journal-title":"Infect. Drug Resist."},{"key":"ref227","doi-asserted-by":"publisher","first-page":"18","DOI":"10.1128\/JCM.02072-18","article-title":"Don\u2019t get wound up: revised fluoroquinolone breakpoints for Enterobacteriaceae and Pseudomonas aeruginosa","volume":"57","author":"Van","year":"2019","journal-title":"J. Clin. Microbiol."},{"key":"ref228","doi-asserted-by":"publisher","first-page":"579","DOI":"10.3390\/microorganisms10030579","article-title":"Plasmid-mediated quinolone resistance (PMQR) in two clinical strains of Salmonella enterica serovar Corvallis","volume":"10","author":"V\u00e1zquez","year":"2022","journal-title":"Microorganisms"},{"key":"ref229","doi-asserted-by":"publisher","first-page":"1159798","DOI":"10.3389\/fcimb.2023.1159798","article-title":"Revisiting ESKAPE pathogens: virulence, resistance, and combating strategies focusing on quorum sensing","volume":"13","author":"Venkateswaran","year":"2023","journal-title":"Front. Cell. Infect. Microbiol."},{"key":"ref230","doi-asserted-by":"publisher","first-page":"001496","DOI":"10.1099\/jmm.0.001496","article-title":"Contribution of the efflux pump AcrAB-TolC to the tolerance of chlorhexidine and other biocides in Klebsiella spp","volume":"71","author":"Wand","year":"2022","journal-title":"J. Med. 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Resist."},{"key":"ref239","doi-asserted-by":"publisher","first-page":"3290","DOI":"10.1128\/AAC.00310-15","article-title":"Evolution and dissemination of OqxAB-like efflux pumps, an emerging quinolone resistance determinant among members of Enterobacteriaceae","volume":"59","author":"Wong","year":"2015","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref240","volume-title":"Global antimicrobial resistance and use surveillance system (GLASS)","year":"2015"},{"key":"ref241","volume-title":"Global action plan on antimicrobial resistance","year":"2015"},{"key":"ref242","volume-title":"WHO integrated global surveillance on ESBL-producing","year":"2021"},{"key":"ref243","volume-title":"Report signals increasing resistance to antibiotics in bacterial infections in humans and need for better data","year":""},{"key":"ref244","volume-title":"Global antimicrobial resistance and use surveillance system (GLASS)","year":""},{"key":"ref245","volume-title":"Global antimicrobial resistance and use surveillance system (GLASS) report: Antibiotic use data for 2022","year":"2024"},{"key":"ref246","doi-asserted-by":"publisher","first-page":"11880","DOI":"10.1038\/s41598-024-62663-2","article-title":"Comparison of CTX-M encoding plasmids present during the early phase of the ESBL pandemic in western Sweden","volume":"14","author":"Wranne","year":"2024","journal-title":"Sci. Rep."},{"key":"ref247","doi-asserted-by":"publisher","first-page":"e0185824","DOI":"10.1128\/aac.01858-24","article-title":"Contribution of RND superfamily multidrug efflux pumps AdeABC, AdeFGH, and AdeIJK to antimicrobial resistance and virulence factors in multidrug-resistant Acinetobacter baumannii AYE","volume":"69","author":"Xie","year":"2025","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref248","doi-asserted-by":"publisher","first-page":"100549","DOI":"10.1016\/j.nmni.2019.100549","article-title":"adeABC efflux gene in Acinetobacter baumannii","volume":"30","author":"Xu","year":"2019","journal-title":"New Microbes New Infect."},{"key":"ref249","doi-asserted-by":"publisher","first-page":"3282","DOI":"10.3390\/biomedicines10123282","article-title":"Bioengineered ciprofloxacin-loaded chitosan nanoparticles for the treatment of bovine mastitis","volume":"10","author":"Yadav","year":"2022","journal-title":"Biomedicine"},{"key":"ref250","doi-asserted-by":"publisher","first-page":"3354","DOI":"10.1128\/AAC.00339-07","article-title":"New plasmid-mediated fluoroquinolone efflux pump, QepA, found in an Escherichia coli clinical isolate","volume":"51","author":"Yamane","year":"2007","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref251","doi-asserted-by":"publisher","first-page":"40610","DOI":"10.1038\/srep40610","article-title":"Bacterial plasmid-mediated quinolone resistance genes in aquatic environments in China","volume":"7","author":"Yan","year":"2017","journal-title":"Sci. Rep."},{"key":"ref252","doi-asserted-by":"publisher","first-page":"421","DOI":"10.1007\/s10096-016-2847-x","article-title":"Plasmid-mediated quinolone resistance in Enterobacteriaceae: a systematic review with a focus on Mediterranean countries","volume":"36","author":"Yanat","year":"2017","journal-title":"Eur. J. Clin. Microbiol. Infect. Dis."},{"key":"ref253","doi-asserted-by":"publisher","first-page":"e13","DOI":"10.1016\/S2666-5247(23)00227-6","article-title":"Interphylum dissemination of NDM-5-positive plasmids in hospital wastewater from Fuzhou, China: a single-Centre, culture-independent, plasmid transmission study","volume":"5","author":"Yang","year":"2024","journal-title":"Lancet Microbe."},{"key":"ref254","doi-asserted-by":"crossref","first-page":"597","DOI":"10.1186\/s12866-025-04299-4","article-title":"Surveillance and characterization of Carbapenem-resistant Enterobacter cloacae Complex from China, 2015\u20132018","volume":"25","author":"Ye","year":"2025","journal-title":"BMC Microbiol"},{"key":"ref255","doi-asserted-by":"publisher","first-page":"2989","DOI":"10.1128\/AAC.02556-12","article-title":"RND-type efflux pumps in multidrug-resistant clinical isolates of Acinetobacter baumannii: major role for AdeABC overexpression and AdeRS mutations","volume":"57","author":"Yoon","year":"2013","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref256","doi-asserted-by":"publisher","first-page":"309","DOI":"10.1128\/mbio.00309-15","article-title":"Contribution of resistance-nodulation-cell division efflux systems to antibiotic resistance and biofilm formation in Acinetobacter baumannii","volume":"6","author":"Yoon","year":"2015","journal-title":"MBio"},{"key":"ref257","doi-asserted-by":"publisher","first-page":"e00594","DOI":"10.1128\/aac.00594-22","article-title":"Increased expression of efflux pump NorA drives the rapid evolutionary trajectory from tolerance to resistance against ciprofloxacin in Staphylococcus aureus","volume":"66","author":"Yu","year":"2022","journal-title":"Antimicrob. 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Chemother."},{"key":"ref261","doi-asserted-by":"publisher","first-page":"1643","DOI":"10.2147\/IDR.S447857","article-title":"Carbapenem-resistant Enterobacter cloacae complex in Southwest China: molecular characteristics and risk factors caused by NDM producers","volume":"17","author":"Zeng","year":"2024","journal-title":"Infect. Drug Resist."},{"key":"ref262","doi-asserted-by":"publisher","first-page":"1993","DOI":"10.2147\/IDR.S501783","article-title":"Establishing Sitafloxacin epidemiological cut-off values (ECOFFs) for clinical bacterial isolates","volume":"18","author":"Zhang","year":"","journal-title":"Infect. Drug Resist."},{"key":"ref263","doi-asserted-by":"publisher","first-page":"5574","DOI":"10.1038\/s41467-025-60765-7","article-title":"Tracking international and regional dissemination of the KPC\/NDM co-producing Klebsiella pneumoniae","volume":"16","author":"Zhang","year":"","journal-title":"Nat. Commun."},{"key":"ref264","doi-asserted-by":"publisher","first-page":"170","DOI":"10.3390\/pharmaceutics16020170","article-title":"Bacterial efflux pump inhibitors reduce antibiotic resistance","volume":"16","author":"Zhang","year":"2024","journal-title":"Pharmaceutics"},{"key":"ref265","doi-asserted-by":"publisher","first-page":"4219","DOI":"10.1128\/AAC.00139-10","article-title":"Prevalence and dissemination of oqxAB in Escherichia coli isolates from animals, farmworkers, and the environment","volume":"54","author":"Zhao","year":"2010","journal-title":"Antimicrob. Agents Chemother."},{"key":"ref266","doi-asserted-by":"publisher","first-page":"124","DOI":"10.1186\/s13756-020-00793-8","article-title":"Development of in vitro resistance to fluoroquinolones in Pseudomonas aeruginosa","volume":"9","author":"Zhao","year":"2020","journal-title":"Antimicrob. Resist. Infect. 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