{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,22]],"date-time":"2026-10-22T00:49:25Z","timestamp":1792630165197,"version":"4.5.0"},"reference-count":146,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2026,1,30]],"date-time":"2026-01-30T00:00:00Z","timestamp":1769731200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Microbiol."],"abstract":"<jats:p>\n                    The review organizes current knowledge on the biofunctions, life-history strategies, and environmental responses of Chloroflexota in agricultural soils. Members of this phylum play key roles in carbon, nitrogen, and phosphorus cycling through a high degree of metabolic versatility, including photosynthesis, redox reactions, and the degradation of complex organic compounds such as cellulose and lignin. Chloroflexota contribute to major soil processes, including nitrification, denitrification, and nitrogen fixation. In agricultural soils, the predominant classes are Anaerolineae and Ktedonobacteria, each exhibiting distinct ecological strategies. Anaerolineae members, such as\n                    <jats:italic>Leptolinea<\/jats:italic>\n                    ,\n                    <jats:italic>Bellilinea<\/jats:italic>\n                    , and\n                    <jats:italic>Anaerolinea<\/jats:italic>\n                    , are often associated with nutrient-enriched conditions, suggesting copiotrophic or competitor- and ruderal-like traits. In contrast, Ktedonobacteria show negative responses to increased soil carbon and nitrogen, suggesting that its members are oligotrophic. Despite these trends, responses to soil organic carbon, nitrogen, phosphorus, and pH vary substantially across studies, likely due to functional heterogeneity within the phylum and insufficient taxonomic resolution in metataxonomic datasets. Emerging evidence from metagenome-assembled genomes (MAGs) reveals that Chloroflexota harbor genes involved in carbon fixation, nitrogen transformations, and phosphorus solubilization, highlighting their previously underestimated ecological significance. However, most Chloroflexota remain uncultured, and available genomic data are still limited. Future research integrating high-resolution taxonomic profiling, metagenomics, and cultivation-based approaches is needed to clarify the ecological roles and life-history strategies of Chloroflexota members. Such advances may ultimately establish this phylum as an important microbial indicator of soil fertility and environmental change in agricultural soils.\n                  <\/jats:p>","DOI":"10.3389\/fmicb.2026.1705889","type":"journal-article","created":{"date-parts":[[2026,1,30]],"date-time":"2026-01-30T06:42:43Z","timestamp":1769755363000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":18,"title":["Chloroflexota in agricultural soils: current knowledge and future research directions"],"prefix":"10.3389","volume":"17","author":[{"given":"Jakub","family":"Dobrzy\u0144ski","sequence":"first","affiliation":[{"name":"Institute of Technology and Life Sciences \u2013 National Research Institute","place":["Raszyn, Poland"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marcin","family":"Gradowski","sequence":"additional","affiliation":[{"name":"Department of Biochemistry and Microbiology, Institute of Biology, Warsaw University of Life Sciences","place":["Warsaw, Poland"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Adam","family":"Radkowski","sequence":"additional","affiliation":[{"name":"Department of Agroecology and Plant Production, University of Agriculture in Krakow","place":["Krakow, Poland"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Henryk","family":"Bujak","sequence":"additional","affiliation":[{"name":"Department of Genetics, Wroclaw University of Environmental and Life Sciences","place":["Wroclaw, Poland"]},{"name":"Research Centre for Cultivar Testing","place":["Slupia Wielka, Poland"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1965","published-online":{"date-parts":[[2026,1,30]]},"reference":[{"key":"ref1","doi-asserted-by":"publisher","first-page":"628379","DOI":"10.3389\/fmicb.2021.628379","article-title":"Nitrogen fixing Azotobacter species as potential soil biological enhancers for crop nutrition and yield stability","volume":"12","author":"Aasfar","year":"2021","journal-title":"Front. Microbiol."},{"key":"ref2","doi-asserted-by":"publisher","first-page":"105491","DOI":"10.1016\/j.still.2022.105491","article-title":"Nitrogen transformation genes and ammonia emission from soil under biochar and urease inhibitor application","volume":"223","author":"Abdo","year":"2022","journal-title":"Soil Tillage Res."},{"key":"ref3","doi-asserted-by":"publisher","first-page":"724","DOI":"10.1007\/s12275-016-6463-3","article-title":"Dynamics of bacterial communities in rice field soils as affected by different long-term fertilization practices","volume":"54","author":"Ahn","year":"2016","journal-title":"J. Microbiol."},{"key":"ref4","doi-asserted-by":"publisher","first-page":"156","DOI":"10.1016\/j.geoderma.2018.01.010","article-title":"Distinct responses of soil bacterial and fungal communities to changes in fertilization regime and crop rotation","volume":"319","author":"Ai","year":"2018","journal-title":"Geoderma"},{"key":"ref5","doi-asserted-by":"publisher","first-page":"1224","DOI":"10.3390\/agriculture11121224","article-title":"Continuous cropping changes the composition and diversity of bacterial communities: a meta-analysis in nine different fields with different plant cultivation","volume":"11","author":"Alami","year":"2021","journal-title":"Agriculture"},{"key":"ref6","doi-asserted-by":"publisher","first-page":"1452","DOI":"10.3390\/agronomy10101452","article-title":"The effects of organic and mineral fertilization on soil enzyme activities and bacterial community in the below- and above-ground parts of wheat","volume":"10","author":"Amadou","year":"2020","journal-title":"Agronomy"},{"key":"ref7","doi-asserted-by":"publisher","first-page":"e16947","DOI":"10.7717\/peerj.16947","article-title":"Oral bacteriophages: metagenomic clues to interpret microbiomes","volume":"12","author":"Banar","year":"2024","journal-title":"PeerJ"},{"key":"ref8","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1128\/MMBR.00019-15","article-title":"Taxonomy, physiology, and natural products of Actinobacteria","volume":"80","author":"Barka","year":"2016","journal-title":"Microbiol. Mol. Biol. Rev."},{"key":"ref9","doi-asserted-by":"publisher","first-page":"379","DOI":"10.1007\/s13199-021-00787-z","article-title":"Nitrogen fertilization and stress factors drive shifts in microbial diversity in soils and plants","volume":"84","author":"Beltran-Garcia","year":"2021","journal-title":"Symbiosis"},{"key":"ref10","doi-asserted-by":"publisher","first-page":"3103","DOI":"10.1128\/AEM.04034-13","article-title":"Nitrogen fertilization has a stronger effect on soil nitrogen-fixing bacterial communities than elevated atmospheric CO2","volume":"80","author":"Berthrong","year":"2014","journal-title":"Appl. Environ. Microbiol."},{"key":"ref11","doi-asserted-by":"publisher","first-page":"603234","DOI":"10.3389\/fmicb.2020.603234","article-title":"Database mining to unravel the ecology of the phylum Chloroflexi in methanogenic full scale bioreactors","volume":"11","author":"Bovio-Winkler","year":"2021","journal-title":"Front. Microbiol."},{"key":"ref12","doi-asserted-by":"publisher","first-page":"45","DOI":"10.1186\/s12866-023-02765-5","article-title":"Genome-centric metagenomic insights into the role of Chloroflexi in anammox, activated sludge and methanogenic reactors","volume":"23","author":"Bovio-Winkler","year":"2023","journal-title":"BMC Microbiol."},{"key":"ref13","doi-asserted-by":"publisher","first-page":"4360","DOI":"10.1128\/AEM.00132-06","article-title":"New lineage of filamentous, spore-forming, gram-positive bacteria from soil","volume":"72","author":"Cavaletti","year":"2006","journal-title":"Appl. Environ. Microbiol."},{"key":"ref14","doi-asserted-by":"publisher","first-page":"97","DOI":"10.4056\/sigs.2114901","article-title":"Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21 T)","volume":"5","author":"Chang","year":"2011","journal-title":"Stand. Genomic Sci."},{"key":"ref16","doi-asserted-by":"publisher","first-page":"136","DOI":"10.1186\/s40168-019-0750-2","article-title":"Root-associated microbiomes of wheat under the combined effect of plant development and nitrogen fertilization","volume":"7","author":"Chen","year":"2019","journal-title":"Microbiome"},{"key":"ref17","doi-asserted-by":"publisher","first-page":"181","DOI":"10.1016\/j.soilbio.2017.07.013","article-title":"Fertilization decreases compositional variation of paddy bacterial community across geographical gradient","volume":"114","author":"Chen","year":"2017","journal-title":"Soil Biol. Biochem."},{"key":"ref18","doi-asserted-by":"publisher","first-page":"113185","DOI":"10.1016\/j.ecoenv.2022.113185","article-title":"Reduction effect of individual N, P, K fertilization on antibiotic resistance genes in reclaimed water irrigated soil","volume":"231","author":"Cui","year":"2022","journal-title":"Ecotoxicol. Environ. Saf."},{"key":"ref19","doi-asserted-by":"publisher","first-page":"16554","DOI":"10.1038\/s41598-018-34685-0","article-title":"Long-term combined application of manure and chemical fertilizer sustained higher nutrient status and rhizospheric bacterial diversity in reddish paddy soil of central South China","volume":"8","author":"Cui","year":"2018","journal-title":"Sci. Rep."},{"key":"ref20","doi-asserted-by":"publisher","first-page":"84","DOI":"10.1016\/j.apsoil.2016.08.005","article-title":"Pyrosequencing analysis of bacterial community diversity in long-term fertilized paddy field soil","volume":"108","author":"Daquiado","year":"2016","journal-title":"Appl. Soil Ecol."},{"key":"ref21","doi-asserted-by":"publisher","first-page":"798","DOI":"10.1111\/j.1462-2920.2010.02384.x","article-title":"Acidobacteria, Rubrobacteridae and Chloroflexi are abundant among very slow-growing and mini-colony-forming soil bacteria","volume":"13","author":"Davis","year":"2011","journal-title":"Environ. Microbiol."},{"key":"ref22","doi-asserted-by":"crossref","first-page":"211","DOI":"10.1007\/978-3-319-90309-5_7","article-title":"Long-term effects of fertilization on soil organism diversity","volume-title":"Sustainable agriculture reviews 28","author":"De Souza","year":"2018"},{"key":"ref23","doi-asserted-by":"publisher","first-page":"120","DOI":"10.1007\/s10482-025-02135-3","article-title":"Paenibacillus peoriae: current knowledge and agricultural biotechnology potential of a close relative of P. polymyxa","volume":"118","author":"Dobrzy\u0144ski","year":"2025","journal-title":"Antonie Van Leeuwenhoek"},{"key":"ref24","doi-asserted-by":"publisher","first-page":"13168","DOI":"10.3390\/ijms252313168","article-title":"Pseudomonas sp. G31 and Azotobacter sp. PBC2 changed structure of bacterial community and modestly promoted growth of oilseed rape","volume":"25","author":"Dobrzy\u0144ski","year":"2024","journal-title":"Int. J. Mol. Sci."},{"key":"ref25","doi-asserted-by":"publisher","first-page":"168","DOI":"10.1007\/s00248-024-02471-3","article-title":"Non-native PGPB consortium altered the rhizobacterial community and slightly stimulated the growth of winter oilseed rape (Brassica napus L.) under field conditions","volume":"87","author":"Dobrzy\u0144ski","year":"","journal-title":"Microb. Ecol."},{"key":"ref26","doi-asserted-by":"publisher","first-page":"3248","DOI":"10.1038\/s41598-025-86820-3","article-title":"Non-native PGPB consortium consisting of Pseudomonas sp. G31 and Azotobacter sp. PBC2 promoted winter wheat growth and slightly altered the native bacterial community","volume":"15","author":"Dobrzy\u0144ski","year":"","journal-title":"Sci. Rep."},{"key":"ref27","doi-asserted-by":"publisher","first-page":"176","DOI":"10.1016\/j.agee.2016.06.039","article-title":"Long-term effects of imbalanced fertilization on the composition and diversity of soil bacterial community","volume":"231","author":"Eo","year":"2016","journal-title":"Agric. Ecosyst. Environ."},{"key":"ref28","doi-asserted-by":"publisher","first-page":"716","DOI":"10.3390\/microorganisms12040716","article-title":"Effect of biogas slurry on the soil properties and microbial composition in an annual ryegrass-silage maize rotation system over a five-year period","volume":"12","author":"Feng","year":"2024","journal-title":"Microorganisms"},{"key":"ref29","doi-asserted-by":"publisher","first-page":"e0175623","DOI":"10.1128\/aem.01756-23","article-title":"The biotechnological potential of the Chloroflexota phylum","volume":"90","author":"Freches","year":"2024","journal-title":"Appl. Environ. Microbiol."},{"key":"ref30","doi-asserted-by":"publisher","first-page":"107285","DOI":"10.1016\/j.agee.2021.107285","article-title":"Effects of long-term biochar and biochar-based fertilizer application on brown earth soil bacterial communities","volume":"309","author":"Gao","year":"2021","journal-title":"Agric. Ecosyst. Environ."},{"key":"ref31","doi-asserted-by":"publisher","first-page":"2058","DOI":"10.1016\/j.soilbio.2010.08.021","article-title":"Pathways of nitrogen utilization by soil microorganisms \u2013 a review","volume":"42","author":"Geisseler","year":"2010","journal-title":"Soil Biol. Biochem."},{"key":"ref32","doi-asserted-by":"publisher","first-page":"54","DOI":"10.1016\/j.soilbio.2014.03.023","article-title":"Long-term effects of mineral fertilizers on soil microorganisms \u2013 a review","volume":"75","author":"Geisseler","year":"2014","journal-title":"Soil Biol. Biochem."},{"key":"ref33","doi-asserted-by":"publisher","first-page":"111545","DOI":"10.1016\/j.ecolind.2023.111545","article-title":"Response of soil microbiota to various soil management practices in 100-year-old agriculture field and identification of potential bacterial ecological indicator","volume":"158","author":"G\u00f3rska","year":"2024","journal-title":"Ecol. Indic."},{"key":"ref34","doi-asserted-by":"publisher","first-page":"1415","DOI":"10.3390\/agronomy11071415","article-title":"The significance of microbial transformation of nitrogen compounds in the light of integrated crop management","volume":"11","author":"Grzyb","year":"2021","journal-title":"Agronomy"},{"key":"ref35","doi-asserted-by":"publisher","first-page":"104356","DOI":"10.1016\/j.still.2019.104356","article-title":"Application of organic fertilizer improves microbial community diversity and alters microbial network structure in tea (Camellia sinensis) plantation soils","volume":"195","author":"Gu","year":"2019","journal-title":"Soil Tillage Res."},{"key":"ref36","doi-asserted-by":"publisher","first-page":"1516","DOI":"10.3389\/fmicb.2017.01516","article-title":"Long-term fertilization structures bacterial and archaeal communities along soil depth gradient in a paddy soil","volume":"8","author":"Gu","year":"2017","journal-title":"Front. Microbiol."},{"key":"ref37","doi-asserted-by":"publisher","first-page":"103510","DOI":"10.1016\/j.apsoil.2020.103510","article-title":"Fertilization regime has a greater effect on soil microbial community structure than crop rotation and growth stage in an agroecosystem","volume":"149","author":"Guo","year":"2020","journal-title":"Appl. Soil Ecol."},{"key":"ref38","doi-asserted-by":"publisher","first-page":"127","DOI":"10.1016\/j.soilbio.2018.10.018","article-title":"Plant-plant interactions and N fertilization shape soil bacterial and fungal communities","volume":"128","author":"Guo","year":"2019","journal-title":"Soil Biol. Biochem."},{"key":"ref9001","doi-asserted-by":"publisher","first-page":"e01347-15","DOI":"10.1128\/genomeA.01347-15","article-title":"Draft genome sequence of ardenticatena maritima 110s, a thermophilic Nitrate- and Iron-reducing member of the chloroflexi class ardenticatenia","volume":"3","author":"Hemp","year":"2015","journal-title":"Genome Announc."},{"key":"ref39","doi-asserted-by":"publisher","first-page":"e0145575","DOI":"10.1371\/journal.pone.0145575","article-title":"Effects of fertilization and sampling time on composition and diversity of entire and active bacterial communities in German grassland soils","volume":"10","author":"Herzog","year":"2015","journal-title":"PLoS One"},{"key":"ref40","doi-asserted-by":"publisher","first-page":"fix006","DOI":"10.1093\/femsec\/fix006","article-title":"Revisiting life strategy concepts in environmental microbial ecology","volume":"93","author":"Ho","year":"2017","journal-title":"FEMS Microbiol. Ecol."},{"key":"ref41","doi-asserted-by":"publisher","first-page":"27587","DOI":"10.1073\/pnas.1919139117","article-title":"Global diversity of microbial communities in marine sediment","volume":"117","author":"Hoshino","year":"2020","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"ref42","doi-asserted-by":"publisher","first-page":"22","DOI":"10.1186\/2049-2618-1-22","article-title":"Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling","volume":"1","author":"Hug","year":"2013","journal-title":"Microbiome"},{"key":"ref43","doi-asserted-by":"publisher","first-page":"1385","DOI":"10.3390\/ijms25031385","article-title":"Fertilization- and irrigation-modified bacterial community composition and stimulated enzyme activity of Eucalyptus plantations soil","volume":"25","author":"Huo","year":"2024","journal-title":"Int. J. Mol. Sci."},{"key":"ref44","doi-asserted-by":"publisher","first-page":"895230","DOI":"10.3389\/fpls.2022.895230","article-title":"Partial substation of organic fertilizer with chemical fertilizer improves soil biochemical attributes, Rice yields, and restores bacterial community diversity in a Paddy field","volume":"13","author":"Iqbal","year":"2022","journal-title":"Front. Plant Sci."},{"key":"ref45","doi-asserted-by":"publisher","first-page":"428","DOI":"10.1134\/S0026261721040068","article-title":"Nitrogen metabolism of an anoxygenic filamentous phototrophic bacterium Oscillocholris trichoides strain DG-6","volume":"90","author":"Ivanovsky","year":"2021","journal-title":"Microbiology"},{"key":"ref46","doi-asserted-by":"publisher","first-page":"123","DOI":"10.1007\/s10482-025-02130-8","article-title":"Role of plant growth-promoting bacteria (PGPB) in enhancing phenolic compounds biosynthesis and its relevance to abiotic stress tolerance in plants: a review","volume":"118","author":"Jakubowska","year":"2025","journal-title":"Antonie Van Leeuwenhoek"},{"key":"ref47","doi-asserted-by":"publisher","first-page":"e0228709","DOI":"10.1371\/journal.pone.0228709","article-title":"Effect of Pennisetum giganteum z.x.lin mixed nitrogen-fixing bacterial fertilizer on the growth, quality, soil fertility and bacterial community of pakchoi (Brassica chinensis L.)","volume":"15","author":"Jia","year":"2020","journal-title":"PLoS One"},{"key":"ref48","doi-asserted-by":"publisher","first-page":"1519","DOI":"10.1128\/AEM.03360-15","article-title":"Long-term enrichment on cellulose or Xylan causes functional and taxonomic convergence of microbial communities from anaerobic digesters","volume":"82","author":"Jia","year":"2016","journal-title":"Appl. Environ. Microbiol."},{"key":"ref49","doi-asserted-by":"publisher","first-page":"111952","DOI":"10.1016\/j.ecoenv.2021.111952","article-title":"Biofertilizer-induced response to cadmium accumulation in Oryza sativa L. grains involving exogenous organic matter and soil bacterial community structure","volume":"211","author":"Jin","year":"2021","journal-title":"Ecotoxicol. Environ. Saf."},{"key":"ref50","doi-asserted-by":"publisher","first-page":"1074","DOI":"10.3389\/fmicb.2018.01074","article-title":"Inorganic nitrogen application affects both taxonomical and predicted functional structure of wheat rhizosphere bacterial communities","volume":"9","author":"Kavamura","year":"2018","journal-title":"Front. Microbiol."},{"key":"ref51","doi-asserted-by":"publisher","first-page":"7","DOI":"10.1186\/s40168-020-0786-3","article-title":"Increased replication of dissimilatory nitrate-reducing bacteria leads to decreased anammox bioreactor performance","volume":"8","author":"Keren","year":"2020","journal-title":"Microbiome"},{"key":"ref52","doi-asserted-by":"publisher","first-page":"1662","DOI":"10.3390\/microorganisms9081662","article-title":"Phylogeny of nitrogenase structural and assembly components reveals new insights into the origin and distribution of nitrogen fixation across Bacteria and Archaea","volume":"9","author":"Koirala","year":"2021","journal-title":"Microorganisms"},{"key":"ref53","doi-asserted-by":"publisher","first-page":"1356171","DOI":"10.3389\/fmicb.2024.1356171","article-title":"Soil bacterial community characteristics and its effect on organic carbon under different fertilization treatments","volume":"15","author":"Kong","year":"2024","journal-title":"Front. Microbiol."},{"key":"ref54","doi-asserted-by":"publisher","first-page":"108252","DOI":"10.1016\/j.agee.2022.108252","article-title":"Bacteroidota structure in the face of varying agricultural practices as an important indicator of soil quality \u2013 a culture independent approach","volume":"342","author":"Kruczy\u0144ska","year":"2023","journal-title":"Agric. Ecosyst. Environ."},{"key":"ref55","doi-asserted-by":"publisher","first-page":"15416","DOI":"10.1038\/ncomms15416","article-title":"Metabolic network analysis reveals microbial community interactions in anammox granules","volume":"8","author":"Lawson","year":"2017","journal-title":"Nat. Commun."},{"key":"ref56","doi-asserted-by":"publisher","first-page":"1135947","DOI":"10.3389\/fpls.2023.1135947","article-title":"Effects of Hanwoo (Korean cattle) manure as organic fertilizer on plant growth, feed quality, and soil bacterial community","volume":"14","author":"Lee","year":"2023","journal-title":"Front. Plant Sci."},{"key":"ref57","doi-asserted-by":"publisher","first-page":"1497","DOI":"10.3390\/agronomy10101497","article-title":"Bacterial community in soils following century-long application of organic or inorganic fertilizers under continuous winter wheat cultivation","volume":"10","author":"Li","year":"2020","journal-title":"Agronomy"},{"key":"ref58","doi-asserted-by":"publisher","first-page":"126445","DOI":"10.1016\/j.eja.2021.126445","article-title":"Partial substitution of chemical fertilizer with organic fertilizer over seven years increases yields and restores soil bacterial community diversity in wheat\u2013rice rotation","volume":"133","author":"Li","year":"2022","journal-title":"Eur. J. Agron."},{"key":"ref59","doi-asserted-by":"publisher","first-page":"1091380","DOI":"10.3389\/fmicb.2023.1091380","article-title":"The effects of microbial fertilizer based aspergillus brunneoviolaceus HZ23 on pakchoi growth, soil properties, rhizosphere bacterial community structure, and metabolites in newly reclaimed land","volume":"14","author":"Li","year":"2023","journal-title":"Front. Microbiol."},{"key":"ref61","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1016\/j.geoderma.2017.01.013","article-title":"Differential responses of soil bacterial communities to long-term N and P inputs in a semi-arid steppe","volume":"292","author":"Ling","year":"2017","journal-title":"Geoderma"},{"key":"ref62","doi-asserted-by":"publisher","first-page":"455","DOI":"10.1016\/j.chemosphere.2017.08.162","article-title":"Different impacts of manure and chemical fertilizers on bacterial community structure and antibiotic resistance genes in arable soils","volume":"188","author":"Liu","year":"2017","journal-title":"Chemosphere"},{"key":"ref63","doi-asserted-by":"publisher","first-page":"107918","DOI":"10.1016\/j.soilbio.2020.107918","article-title":"Long-term high-P fertilizer input decreased the total bacterial diversity but not phoD-harboring bacteria in wheat rhizosphere soil with available-P deficiency","volume":"149","author":"Liu","year":"2020","journal-title":"Soil Biol. Biochem."},{"key":"ref64","doi-asserted-by":"publisher","first-page":"1131770","DOI":"10.3389\/fmicb.2023.1131770","article-title":"Differential response of the soil nutrients, soil bacterial community structure and metabolic functions to different risk areas in Lead-Zine tailings","volume":"14","author":"Liu","year":"2023","journal-title":"Front. Microbiol."},{"key":"ref65","doi-asserted-by":"publisher","first-page":"108922","DOI":"10.1016\/j.soilbio.2022.108922","article-title":"Long-term organic fertilization promotes the resilience of soil multifunctionality driven by bacterial communities","volume":"177","author":"Luo","year":"2023","journal-title":"Soil Biol. Biochem."},{"key":"ref66","doi-asserted-by":"publisher","first-page":"136799","DOI":"10.1016\/j.scitotenv.2020.136799","article-title":"Enhance the treatment of low strength wastewater at low temperature with the coexistence system of AnAOB and heterotrophic bacteria: performance and bacterial community","volume":"714","author":"Lv","year":"2020","journal-title":"Sci. Total Environ."},{"key":"ref67","doi-asserted-by":"publisher","first-page":"601705","DOI":"10.3389\/fmicb.2021.601705","article-title":"Assessment of biological contribution to natural recovery of anthropized freshwater sediments from Argentina: autochthonous microbiome structure and functional prediction","volume":"12","author":"Madue\u00f1o","year":"2021","journal-title":"Front. Microbiol."},{"key":"ref68","doi-asserted-by":"publisher","first-page":"e00975","DOI":"10.1128\/genomeA.00975-15","article-title":"Draft genome sequences of Anaerolinea thermolimosa IMO-1, Bellilinea caldifistulae GOMI-1, Leptolinea tardivitalis YMTK-2, Levilinea saccharolytica KIBI-1, Longilinea arvoryzae KOME-1, previously described as members of the class Anaerolineae (Chloroflexi)","volume":"3","author":"Matsuura","year":"2015","journal-title":"Genome Announc."},{"key":"ref69","doi-asserted-by":"publisher","first-page":"7787","DOI":"10.1021\/es071263x","article-title":"Significance of Chloroflexi in performance of submerged membrane bioreactors (MBR) treating municipal wastewater","volume":"41","author":"Miura","year":"2007","journal-title":"Environ. Sci. Technol."},{"key":"ref70","doi-asserted-by":"publisher","first-page":"9896","DOI":"10.1038\/s41598-024-60655-w","article-title":"Temporal and fertilizer-dependent dynamics of soil bacterial communities in buckwheat fields under long-term management","volume":"14","author":"Morigasaki","year":"2024","journal-title":"Sci. Rep."},{"key":"ref71","doi-asserted-by":"publisher","first-page":"60","DOI":"10.1007\/s10532-025-10157-x","article-title":"Biotransformation of as, Cr, hg, and Mn by Pseudomonadota: chances and risks","volume":"36","author":"Nazi\u0119b\u0142o","year":"2025","journal-title":"Biodegradation"},{"key":"ref72","doi-asserted-by":"publisher","first-page":"2561","DOI":"10.1038\/s41396-021-00947-5","article-title":"Microbial metabolism and necromass mediated fertilization effect on soil organic carbon after long-term community incubation in different climates","volume":"15","author":"Ni","year":"2021","journal-title":"ISME J."},{"key":"ref73","doi-asserted-by":"publisher","first-page":"400","DOI":"10.3390\/f15030400","article-title":"Effects of compound fertilizer decrement and water-soluble humic acid fertilizer application on soil properties, bacterial community structure, and shoot yield in lei bamboo (Phyllostachys praecox) plantations in subtropical China","volume":"15","author":"Ni","year":"2024","journal-title":"Forests"},{"key":"ref74","doi-asserted-by":"publisher","first-page":"fiy228","DOI":"10.1093\/femsec\/fiy228","article-title":"The morphology and metabolic potential of the Chloroflexi in full-scale activated sludge wastewater treatment plants","volume":"95","author":"Nierychlo","year":"2019","journal-title":"FEMS Microbiol. Ecol."},{"key":"ref75","doi-asserted-by":"publisher","first-page":"1031624","DOI":"10.3389\/fmicb.2022.1031624","article-title":"Response of rhizosphere microbial community of Chinese chives under different fertilization treatments","volume":"13","author":"Niu","year":"2022","journal-title":"Front. Microbiol."},{"key":"ref76","doi-asserted-by":"publisher","first-page":"952","DOI":"10.1038\/s41396-023-01405-0","article-title":"Thermophilic Dehalococcoidia with unusual traits shed light on an unexpected past","volume":"17","author":"Palmer","year":"2023","journal-title":"ISME J."},{"key":"ref78","doi-asserted-by":"publisher","first-page":"703","DOI":"10.3389\/fmicb.2016.00703","article-title":"Unearthing the ecology of soil microorganisms using a high resolution DNA-SIP approach to explore cellulose and xylose metabolism in soil","volume":"7","author":"Pepe-Ranney","year":"2016","journal-title":"Front. Microbiol."},{"key":"ref79","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1007\/BF00446302","article-title":"A phototrophic gliding filamentous bacterium of hot springs, Chloroflexus aurantiacus, gen. And sp. nov","volume":"100","author":"Pierson","year":"1974","journal-title":"Arch. Microbiol."},{"key":"ref80","doi-asserted-by":"publisher","first-page":"86","DOI":"10.1099\/ijs.0.041012-0","article-title":"Ornatilinea apprima gen. Nov., sp. nov., a cellulolytic representative of the class Anaerolineae","volume":"63","author":"Podosokorskaya","year":"2013","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"ref81","doi-asserted-by":"publisher","first-page":"2856","DOI":"10.3390\/agronomy13122856","article-title":"Synergistic effects of N fertilization and irrigation on soil bacterial community in super rice paddies","volume":"13","author":"Qian","year":"2023","journal-title":"Agronomy"},{"key":"ref82","doi-asserted-by":"publisher","first-page":"7281","DOI":"10.1128\/AEM.01823-15","article-title":"phoD alkaline phosphatase gene diversity in soil","volume":"81","author":"Ragot","year":"2015","journal-title":"Appl. Environ. Microbiol."},{"key":"ref83","doi-asserted-by":"publisher","first-page":"638326","DOI":"10.3389\/fmicb.2021.638326","article-title":"Changes in soil microbial activity, bacterial community composition and function in a long-term continuous soybean cropping system after corn insertion and fertilization","volume":"12","author":"Rao","year":"2021","journal-title":"Front. Microbiol."},{"key":"ref84","doi-asserted-by":"publisher","first-page":"347","DOI":"10.1111\/omi.12434","article-title":"Critical review of 16S rRNA gene sequencing workflow in microbiome studies: from primer selection to advanced data analysis","volume":"38","author":"Regueira-Iglesias","year":"2023","journal-title":"Mol Oral Microbiol"},{"key":"ref85","doi-asserted-by":"publisher","first-page":"502","DOI":"10.3390\/microorganisms8040502","article-title":"Biochar and rhizobacteria amendments improve several soil properties and bacterial diversity","volume":"8","author":"Ren","year":"2020","journal-title":"Microorganisms"},{"key":"ref86","doi-asserted-by":"publisher","first-page":"1091","DOI":"10.3390\/f15071091","article-title":"Interactive effects of biochar and nitrogen fertilizer on plant performance mediated by soil microbial community in a eucalypt plantation","volume":"15","author":"Ren","year":"2024","journal-title":"Forests"},{"key":"ref87","doi-asserted-by":"publisher","first-page":"3644","DOI":"10.1007\/s00284-021-02634-2","article-title":"Comparative effect of fertilization practices on soil microbial diversity and activity: An overview","volume":"78","author":"Sabir","year":"2021","journal-title":"Curr. Microbiol."},{"key":"ref88","doi-asserted-by":"publisher","first-page":"111","DOI":"10.1016\/j.apsoil.2018.10.016","article-title":"Long-term phosphorus limitation changes the bacterial community structure and functioning in paddy soils","volume":"134","author":"Samaddar","year":"2019","journal-title":"Appl. Soil Ecol."},{"key":"ref89","doi-asserted-by":"publisher","first-page":"1592","DOI":"10.3390\/microorganisms8101592","article-title":"Gut microbiome in children from indigenous and urban communities in M\u00e9xico: different subsistence models, different microbiomes","volume":"8","author":"S\u00e1nchez-Quinto","year":"2020","journal-title":"Microorganisms"},{"key":"ref90","doi-asserted-by":"publisher","first-page":"e1258","DOI":"10.1002\/mbo3.1258","article-title":"Novel nitrite reductase domain structure suggests a chimeric denitrification repertoire in the phylum Chloroflexi","volume":"11","author":"Schwartz","year":"2022","journal-title":"Microbiol. Open"},{"key":"ref91","doi-asserted-by":"publisher","first-page":"78","DOI":"10.3390\/d15010078","article-title":"Effects of different fertilizers on soil microbial diversity during long-term fertilization of a corn field in Shanghai, China","volume":"15","author":"Sha","year":"2023","journal-title":"Diversity"},{"key":"ref92","doi-asserted-by":"publisher","first-page":"2245","DOI":"10.1038\/ismej.2012.70","article-title":"Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi","volume":"6","author":"Sorokin","year":"2012","journal-title":"ISME J."},{"key":"ref93","doi-asserted-by":"publisher","first-page":"992","DOI":"10.1038\/ismej.2009.43","article-title":"Abundance, composition, diversity and novelty of soil Proteobacteria","volume":"3","author":"Spain","year":"2009","journal-title":"ISME J."},{"key":"ref94","doi-asserted-by":"publisher","first-page":"fiz044","DOI":"10.1093\/femsec\/fiz044","article-title":"Long-term urea fertilization alters the composition and increases the abundance of soil ureolytic bacterial communities in an upland soil","volume":"95","author":"Sun","year":"","journal-title":"FEMS Microbiol. Ecol."},{"key":"ref95","doi-asserted-by":"publisher","first-page":"1266","DOI":"10.1111\/gcbb.12995","article-title":"Biochar and nitrogen fertilizer promote rice yield by altering soil enzyme activity and microbial community structure","volume":"14","author":"Sun","year":"2022","journal-title":"GCB Bioenergy"},{"key":"ref96","doi-asserted-by":"publisher","first-page":"16954","DOI":"10.3390\/ijerph192416954","article-title":"Positive effects of organic substitution in reduced-fertilizer regimes on bacterial diversity and N-cycling functionality in greenhouse ecosystem","volume":"19","author":"Sun","year":"2022","journal-title":"Int. J. Environ. Res. Public Health"},{"key":"ref97","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1016\/j.soilbio.2016.02.011","article-title":"Alteration of the soil bacterial community during parent material maturation driven by different fertilization treatments","volume":"96","author":"Sun","year":"2016","journal-title":"Soil Biol. Biochem."},{"key":"ref98","doi-asserted-by":"publisher","first-page":"9","DOI":"10.1016\/j.soilbio.2015.05.007","article-title":"Bacterial diversity in soils subjected to long-term chemical fertilization can be more stably maintained with the addition of livestock manure than wheat straw","volume":"88","author":"Sun","year":"2015","journal-title":"Soil Biol. Biochem."},{"key":"ref99","doi-asserted-by":"publisher","first-page":"574","DOI":"10.3390\/agronomy9100574","article-title":"Long-term N fertilization decreased diversity and altered the composition of soil bacterial and archaeal communities","volume":"9","author":"Sun","year":"","journal-title":"Agronomy"},{"key":"ref9002","doi-asserted-by":"publisher","first-page":"992","DOI":"10.1139\/cjm-2018-0336","article-title":"Analysis of carbohydrate-active enzymes in Thermogemmatispora sp. strain T81 reveals carbohydrate degradation ability","volume":"64","author":"Tomazini","year":"2018","journal-title":"Can. J. Microbiol."},{"key":"ref100","doi-asserted-by":"publisher","first-page":"253","DOI":"10.3390\/agronomy13010253","article-title":"Effects on soil bacterial organisms in an alfalfa monocropping system after corn insertion and nitrogen fertilization","volume":"13","author":"Tong","year":"2023","journal-title":"Agronomy"},{"key":"ref101","doi-asserted-by":"publisher","first-page":"478","DOI":"10.1111\/1574-6941.12009","article-title":"Chronic N-amended soils exhibit an altered bacterial community structure in Harvard Forest, MA, USA","volume":"83","author":"Turlapati","year":"2013","journal-title":"FEMS Microbiol. Ecol."},{"key":"ref102","doi-asserted-by":"publisher","first-page":"1193","DOI":"10.3390\/microorganisms8081193","article-title":"How do soil bacterial diversity and community composition respond under recommended and conventional nitrogen fertilization regimes?","volume":"8","author":"Ullah","year":"2020","journal-title":"Microorganisms"},{"key":"ref103","doi-asserted-by":"publisher","first-page":"88","DOI":"10.1002\/jobm.202000485","article-title":"Nitrospira as versatile nitrifiers: taxonomy, ecophysiology, genome characteristics, growth, and metabolic diversity","volume":"61","author":"Vijayan","year":"2021","journal-title":"J. Basic Microbiol."},{"key":"ref104","doi-asserted-by":"publisher","first-page":"282","DOI":"10.3390\/d13070282","article-title":"Bacterial diversity and community in response to long-term nitrogen fertilization gradient in citrus orchard soils","volume":"13","author":"Wan","year":"2021","journal-title":"Diversity"},{"key":"ref105","doi-asserted-by":"publisher","first-page":"115411","DOI":"10.1016\/j.envpol.2020.115411","article-title":"Ameliorative effects of silicon fertilizer on soil bacterial community and pakchoi (Brassica chinensis L.) grown on soil contaminated with multiple heavy metals","volume":"267","author":"Wang","year":"2020","journal-title":"Environ. Pollut."},{"key":"ref106","doi-asserted-by":"publisher","first-page":"1046","DOI":"10.1007\/s11368-015-1320-2","article-title":"Differential responses of soil bacterial taxa to long-term P, N, and organic manure application","volume":"16","author":"Wang","year":"2016","journal-title":"J. Soils Sediments"},{"key":"ref108","doi-asserted-by":"publisher","first-page":"1701","DOI":"10.3389\/fmicb.2017.01701","article-title":"Fungal communities in rhizosphere soil under conservation tillage shift in response to plant growth","volume":"8","author":"Wang","year":"2017","journal-title":"Front. Microbiol."},{"key":"ref109","doi-asserted-by":"publisher","first-page":"240266","DOI":"10.1007\/s42832-024-0266-0","article-title":"The hidden diversity and functional potential of Chloroflexota genomes in arsenic and antimony co-contaminated soils","volume":"7","author":"Wang","year":"2025","journal-title":"Soil Ecol. Lett."},{"key":"ref110","doi-asserted-by":"publisher","first-page":"1404","DOI":"10.3390\/agronomy13051404","article-title":"Soil bacterial community structure and function under the substitution of chemical fertilizer with maize straw","volume":"13","author":"Wang","year":"2023","journal-title":"Agronomy"},{"key":"ref111","doi-asserted-by":"publisher","first-page":"1207","DOI":"10.3389\/fmicb.2016.01207","article-title":"Wheat and rice growth stages and fertilization regimes alter soil bacterial community structure, but not diversity","volume":"7","author":"Wang","year":"2016","journal-title":"Front. Microbiol."},{"key":"ref112","doi-asserted-by":"publisher","first-page":"1910","DOI":"10.1099\/ijsem.0.003379","article-title":"Tengunoibacter tsumagoiensis gen. Nov., sp. nov., Dictyobacter kobayashii sp. nov., Dictyobacter alpinus sp. nov., and description of Dictyobacteraceae fam. Nov. within the order Ktedonobacterales isolated from tengu-no-mugimeshi, a soil-like granular mass of micro-organisms, and emended descriptions of the genera Ktedonobacter and Dictyobacter","volume":"69","author":"Wang","year":"2019","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"ref113","doi-asserted-by":"publisher","first-page":"9","DOI":"10.1186\/s40793-020-00357-8","article-title":"Microbial mats in the Turks and Caicos Islands reveal diversity and evolution of phototrophy in the Chloroflexota order Aggregatilineales","volume":"15","author":"Ward","year":"2020","journal-title":"Environ. Microb."},{"key":"ref114","doi-asserted-by":"publisher","first-page":"383","DOI":"10.1038\/ismej.2013.143","article-title":"Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi","volume":"8","author":"Wasmund","year":"2014","journal-title":"ISME J."},{"key":"ref115","doi-asserted-by":"publisher","first-page":"2612","DOI":"10.3390\/microorganisms11102612","article-title":"Taxonomic re-classification and expansion of the phylum Chloroflexota based on over 5000 genomes and metagenome-assembled genomes","volume":"11","author":"Wiegand","year":"2023","journal-title":"Microorganisms"},{"key":"ref116","doi-asserted-by":"publisher","first-page":"601","DOI":"10.3390\/agronomy11030601","article-title":"Chemical properties and bacterial community reaction to acidified cattle slurry fertilization in soil from maize cultivation","volume":"11","author":"Wierzchowski","year":"2021","journal-title":"Agronomy"},{"key":"ref117","doi-asserted-by":"publisher","first-page":"e02264-23","DOI":"10.1128\/aem.02264-23","article-title":"Novel endolithic bacteria of phylum Chloroflexota reveal a myriad of potential survival strategies in the Antarctic desert","volume":"90","author":"Williams","year":"2024","journal-title":"Appl. Environ. Microbiol."},{"key":"ref118","doi-asserted-by":"publisher","first-page":"1019042","DOI":"10.3389\/fpls.2022.1019042","article-title":"Long-term fertilization has different impacts on bacterial communities and phosphorus forms in sugarcane rhizosphere and bulk soils under low-P stress","volume":"13","author":"Wu","year":"2022","journal-title":"Front. Plant Sci."},{"key":"ref119","doi-asserted-by":"publisher","first-page":"9568","DOI":"10.1038\/s41598-020-66648-9","article-title":"Increased organic fertilizer application and reduced chemical fertilizer application affect the soil properties and bacterial communities of grape rhizosphere soil","volume":"10","author":"Wu","year":"2020","journal-title":"Sci. Rep."},{"key":"ref120","doi-asserted-by":"publisher","first-page":"1645","DOI":"10.3390\/agronomy13061645","article-title":"Long-term chemical fertilization drove beneficial bacteria for rice soil to move from bulk soil to the rhizosphere","volume":"13","author":"Xiao","year":"2023","journal-title":"Agronomy"},{"key":"ref121","doi-asserted-by":"publisher","first-page":"e04165-23","DOI":"10.1128\/spectrum.04165-23","article-title":"Soil pH amendment alters the abundance, diversity, and composition of microbial communities in two contrasting agricultural soils","volume":"12","author":"Xiong","year":"2024","journal-title":"Microbiol. Spectr."},{"key":"ref122","doi-asserted-by":"publisher","first-page":"1266016","DOI":"10.3389\/fmicb.2023.1266016","article-title":"Microbial carbohydrate-active enzymes influence soil carbon by regulating the of plant- and fungal-derived biomass decomposition in plateau peat wetlands under differing water conditions","volume":"14","author":"Xiong","year":"2023","journal-title":"Front. Microbiol."},{"key":"ref123","doi-asserted-by":"publisher","first-page":"1349","DOI":"10.1007\/s11676-021-01433-6","article-title":"Effects of enrichment planting with native tree species on bacterial community structure and potential impact on Eucalyptus plantations in southern China","volume":"33","author":"Xu","year":"2022","journal-title":"J. For. Res."},{"key":"ref9003","doi-asserted-by":"publisher","first-page":"9391","DOI":"10.1021\/es5021058","article-title":"Biochar impacts soil microbial community composition and Nitrogen cycling in an acidic soil planted with rape","volume":"48","author":"Xu","year":"2014","journal-title":"Environ. Sci. Technol."},{"key":"ref124","doi-asserted-by":"publisher","first-page":"2534","DOI":"10.1007\/s11368-019-02258-x","article-title":"Effect of biogas slurry addition on soil properties, yields, and bacterial composition in the rice-rape rotation ecosystem over 3 years","volume":"19","author":"Xu","year":"2019","journal-title":"J. Soils Sediments"},{"key":"ref125","doi-asserted-by":"publisher","first-page":"2615","DOI":"10.1099\/ijsem.0.002012","article-title":"Dictyobacter aurantiacus gen. Nov., sp. nov., a member of the family Ktedonobacteraceae, isolated from soil, and emended description of the genus Thermosporothrix","volume":"67","author":"Yabe","year":"2017","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"ref126","doi-asserted-by":"publisher","first-page":"2299","DOI":"10.1099\/ijs.0.65098-0","article-title":"Bellilinea caldifistulae gen. Nov., sp. nov. and Longilinea arvoryzae gen. Nov., sp. nov., strictly anaerobic, filamentous bacteria of the phylum Chloroflexi isolated from methanogenic propionate-degrading consortia","volume":"57","author":"Yamada","year":"2007","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"ref127","doi-asserted-by":"publisher","first-page":"1015","DOI":"10.1099\/ijsem.0.003864","article-title":"Ktedonosporobacter rubrisoli gen. Nov., sp. nov., a novel representative of the class Ktedonobacteria, isolated from red soil, and proposal of Ktedonosporobacteraceae fam. Nov","volume":"70","author":"Yan","year":"2020","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"ref128","doi-asserted-by":"publisher","first-page":"148757","DOI":"10.1016\/j.scitotenv.2021.148757","article-title":"Biochar-based fertilizer amendments improve the soil microbial community structure in a karst mountainous area","volume":"794","author":"Yan","year":"2021","journal-title":"Sci. Total Environ."},{"key":"ref129","doi-asserted-by":"publisher","first-page":"1186","DOI":"10.3390\/agronomy14061186","article-title":"Characteristics of the soil microbial community structure under long-term chemical fertilizer application in yellow soil paddy fields","volume":"14","author":"Yang","year":"","journal-title":"Agronomy"},{"key":"ref130","doi-asserted-by":"publisher","first-page":"171048","DOI":"10.1016\/j.scitotenv.2024.171048","article-title":"Soil nitrogen cycling gene abundances in response to organic amendments: a meta-analysis","volume":"921","author":"Yang","year":"","journal-title":"Sci. Total Environ."},{"key":"ref131","doi-asserted-by":"publisher","first-page":"14","DOI":"10.3390\/agronomy9010014","article-title":"Dynamics of bacterial communities in a 30-year fertilized paddy field under different organic-inorganic fertilization strategies","volume":"9","author":"Yang","year":"2019","journal-title":"Agronomy"},{"key":"ref132","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1016\/j.soilbio.2014.09.009","article-title":"Rate-specific responses of prokaryotic diversity and structure to nitrogen deposition in the Leymus chinensis steppe","volume":"79","author":"Yao","year":"2014","journal-title":"Soil Biol. Biochem."},{"key":"ref133","doi-asserted-by":"publisher","first-page":"346","DOI":"10.1002\/ldr.3705","article-title":"Response of soil characteristics and bacterial communities to nitrogen fertilization gradients in a coastal salt-affected agroecosystem","volume":"32","author":"Yao","year":"2020","journal-title":"Land Degrad. Dev."},{"key":"ref134","doi-asserted-by":"publisher","first-page":"3186","DOI":"10.1007\/s11368-018-1991-6","article-title":"Effects of different fertilization regimes on nitrogen and phosphorus losses by surface runoff and bacterial community in a vegetable soil","volume":"18","author":"Yi","year":"2018","journal-title":"J. Soils Sediments"},{"key":"ref135","first-page":"101","article-title":"Influence of external nitrogen on nitrogenase enzyme activity and auxin production in Herbaspirillum seropedicae (Z78)","volume":"26","author":"Yin","year":"2015","journal-title":"Trop. Life Sci. Res."},{"key":"ref136","doi-asserted-by":"publisher","first-page":"625","DOI":"10.1016\/j.scitotenv.2018.11.359","article-title":"Responses of paddy soil bacterial community assembly to different long-term fertilizations in Southeast China","volume":"656","author":"Yu","year":"2019","journal-title":"Sci. Total Environ."},{"key":"ref137","doi-asserted-by":"publisher","first-page":"1543","DOI":"10.1890\/15-1160.1","article-title":"Plant community and soil chemistry responses to long-term nitrogen inputs drive changes in alpine bacterial communities","volume":"97","author":"Yuan","year":"2016","journal-title":"Ecology"},{"key":"ref138","doi-asserted-by":"publisher","first-page":"1501","DOI":"10.3390\/plants9111501","article-title":"Response of horticultural soil microbiota to different fertilization practices","volume":"9","author":"Zarraonaindia","year":"2020","journal-title":"Plants"},{"key":"ref139","doi-asserted-by":"publisher","first-page":"907","DOI":"10.3390\/ijms24020907","article-title":"Molecular mechanism and agricultural application of the NifA\u2013NifL system for nitrogen fixation","volume":"24","author":"Zhang","year":"2023","journal-title":"Int. J. Mol. Sci."},{"key":"ref140","doi-asserted-by":"publisher","first-page":"1325","DOI":"10.3389\/fmicb.2017.01325","article-title":"Fertilization shapes bacterial community structure by alteration of soil pH","volume":"8","author":"Zhang","year":"2017","journal-title":"Front. Microbiol."},{"key":"ref141","doi-asserted-by":"publisher","first-page":"e01263","DOI":"10.1128\/msystems.01263-23","article-title":"Diversity and distribution of biosynthetic gene clusters in agricultural soil microbiomes","volume":"9","author":"Zhang","year":"2024","journal-title":"mSystems"},{"key":"ref142","doi-asserted-by":"publisher","first-page":"958","DOI":"10.3390\/microorganisms10050958","article-title":"The application of mixed organic and inorganic fertilizers drives soil nutrient and bacterial community changes in teak plantations","volume":"10","author":"Zhang","year":"2022","journal-title":"Microorganisms"},{"key":"ref143","doi-asserted-by":"publisher","first-page":"1116","DOI":"10.1134\/S1064229322080178","article-title":"Long-term fertilizer use altered soil microbial community structure but not \u03b1-diversity in subtropical southwestern China","volume":"55","author":"Zhao","year":"2022","journal-title":"Eurasian Soil Sci."},{"key":"ref144","doi-asserted-by":"publisher","first-page":"622","DOI":"10.1016\/j.jbiosc.2021.01.008","article-title":"High cellulolytic potential of the Ktedonobacteria lineage revealed by genome-wide analysis of CAZymes","volume":"131","author":"Zheng","year":"2021","journal-title":"J. Biosci. Bioeng."},{"key":"ref145","doi-asserted-by":"publisher","first-page":"1805","DOI":"10.1099\/ijsem.0.003972","article-title":"Dictyobacter vulcani sp. nov., belonging to the class Ktedonobacteria, isolated from soil of the Mt Zao volcano","volume":"70","author":"Zheng","year":"2020","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"ref146","doi-asserted-by":"publisher","first-page":"3267","DOI":"10.1038\/s41598-017-03539-6","article-title":"Consistent effects of nitrogen fertilization on soil bacterial communities in black soils for two crop seasons in China","volume":"7","author":"Zhou","year":"2017","journal-title":"Sci. Rep."},{"key":"ref147","doi-asserted-by":"publisher","first-page":"968551","DOI":"10.3389\/fmicb.2022.968551","article-title":"Ratio of carbon and nitrogen in fertilizer treatment drives distinct rhizosphere microbial community composition and co-occurrence networks","volume":"13","author":"Zhu","year":"2022","journal-title":"Front. Microbiol."}],"container-title":["Frontiers in Microbiology"],"original-title":[],"link":[{"URL":"https:\/\/www.frontiersin.org\/articles\/10.3389\/fmicb.2026.1705889\/full","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,1,30]],"date-time":"2026-01-30T06:42:45Z","timestamp":1769755365000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.frontiersin.org\/articles\/10.3389\/fmicb.2026.1705889\/full"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,1,30]]},"references-count":146,"alternative-id":["10.3389\/fmicb.2026.1705889"],"URL":"https:\/\/doi.org\/10.3389\/fmicb.2026.1705889","relation":{},"ISSN":["1664-302X"],"issn-type":[{"value":"1664-302X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,1,30]]},"article-number":"1705889"}}