{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,2]],"date-time":"2026-07-02T07:01:47Z","timestamp":1782975707689,"version":"3.54.5"},"reference-count":67,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2026,7,2]],"date-time":"2026-07-02T00:00:00Z","timestamp":1782950400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Microbiol."],"abstract":"\n Purpose<\/jats:title>\n \n Non-typhoidal\n Salmonella<\/jats:italic>\n (NTS) is a major foodborne pathogen worldwide, especially in low and middle-income countries. This study used whole-genome sequencing (WGS) to analyze the epidemiological trends, sequence types (STs), antimicrobial resistance (AMR), and genome dynamics, and to assess the phylogenetic relatedness of NTS isolates in Burkina Faso.\n <\/jats:p>\n <\/jats:sec>\n \n Methods<\/jats:title>\n \n A total of 34 presumptive\n Salmonella enterica<\/jats:italic>\n isolates from animal products (\n n<\/jats:italic>\n \u202f=\u202f20), environmental sources (\n n<\/jats:italic>\n \u202f=\u202f8), and diarrheal stool samples (\n n<\/jats:italic>\n \u202f=\u202f6) were analyzed by Matrix-Assisted Laser Desorption Ionization-Time Of Flight mass spectrometry (MALDI\u2013TOF MS). Isolates confirmed as\n S. enterica<\/jats:italic>\n by MALDI\u2013TOF MS were subsequently sequenced, and bioinformatic analysis was performed using the Bactopia pipeline.\n <\/jats:p>\n <\/jats:sec>\n \n Results<\/jats:title>\n \n Of the 34 presumptive\n Salmonella<\/jats:italic>\n isolates, 21 (61.76%) were confirmed as\n Salmonella enterica<\/jats:italic>\n by MALDI\u2013TOF MS. Of the 21\n Salmonella enterica<\/jats:italic>\n detected, 16 were from animal products, 3 were from environmental sources, and 2 were from diarrheal stool samples. The most prevalent serovars were\n S<\/jats:italic>\n . Schwarzengrund (ST96) and\n S<\/jats:italic>\n . Give (ST516), each accounting for four isolates (19.04%). All isolates carried the resistance genes\n emrR, pmrE, mdtK, cpxAR, bacA, baeSR, mdtABC, acrA, KdpE, golS, mdsABC, marA, mfd, msbA, sdiA, rob, UhpT<\/jats:italic>\n and\n GlpT fosR<\/jats:italic>\n . One\n S<\/jats:italic>\n . Molade or\n S.<\/jats:italic>\n Wippra isolate ST544, harbored the AMR genes\n fosA7-4, sul2, tet(A), dfrA14, qnrB1,<\/jats:italic>\n and\n aph(3\u02ba)-Ib.<\/jats:italic>\n In addition, one\n S.<\/jats:italic>\n Llandoff isolate carried\n catA, aac(6\u02b9),<\/jats:italic>\n and\n fosM<\/jats:italic>\n . Virulence genes, including\n invA, avrA, iroB, iroC,<\/jats:italic>\n and\n sinH,<\/jats:italic>\n were observed in all isolates, while 72.73% of the isolates harbored the\n cdtB<\/jats:italic>\n gene.\n <\/jats:p>\n <\/jats:sec>\n \n Conclusion<\/jats:title>\n \n This is the first extensive study on non-typhoidal\n Salmonella<\/jats:italic>\n and their clones in Burkina Faso. Effective AMR-inclusive surveillance strategies and novel control methods are needed to improve the management and treatment of multidrug-resistant (MDR) NTS infections and to mitigate the burden of NTS in the African sub-region.\n <\/jats:p>\n <\/jats:sec>","DOI":"10.3389\/fmicb.2026.1743556","type":"journal-article","created":{"date-parts":[[2026,7,2]],"date-time":"2026-07-02T05:34:31Z","timestamp":1782970471000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":0,"title":["Preliminary genomic characterisation and antimicrobial resistance of non-typhoidal Salmonella isolates from Burkina Faso within a One Health framework"],"prefix":"10.3389","volume":"17","author":[{"given":"Namwin Siourim\u00e8","family":"Somda","sequence":"first","affiliation":[{"name":"Department of Medical Microbiology, University of Ghana Medical School","place":["Accra, Ghana"]},{"name":"D\u00e9partement Technologie Alimentaire (DTA), Centre National de la Recherche Scientifique et Technologique (CNRST)\/IRSAT","place":["Bobo-Dioulasso, Burkina Faso"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mah Alima Esther","family":"Traor\u00e9","sequence":"additional","affiliation":[{"name":"D\u00e9partement Technologie Alimentaire (DTA), Centre National de la Recherche Scientifique et Technologique (CNRST)\/IRSAT","place":["Bobo-Dioulasso, Burkina Faso"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tomiwa Olumide","family":"Adesoji","sequence":"additional","affiliation":[{"name":"Department of Microbiology, Obafemi Awolowo University","place":["Ile-Ife, Nigeria"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Samuel","family":"Darkwah","sequence":"additional","affiliation":[{"name":"Department of Medical Microbiology, University of Ghana Medical School","place":["Accra, Ghana"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Samiratu","family":"Mahazu","sequence":"additional","affiliation":[{"name":"Department of Medical Microbiology, University of Ghana Medical School","place":["Accra, Ghana"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Patience B.","family":"Tetteh-Quarcoo","sequence":"additional","affiliation":[{"name":"Department of Medical Microbiology, University of Ghana Medical School","place":["Accra, Ghana"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eric S.","family":"Donkor","sequence":"additional","affiliation":[{"name":"Department of Medical Microbiology, University of Ghana Medical School","place":["Accra, Ghana"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1965","published-online":{"date-parts":[[2026,7,2]]},"reference":[{"key":"ref1","doi-asserted-by":"publisher","first-page":"e1002776","DOI":"10.1371\/journal.ppat.1002776","article-title":"Multilocus sequence typing as a replacement for serotyping in Salmonella enterica","volume":"8","author":"Achtman","year":"2012","journal-title":"PLoS Pathog."},{"key":"ref2","doi-asserted-by":"publisher","first-page":"55","DOI":"10.62746\/njlhs.v3n2.58","article-title":"Antibiotic resistance: targeting extensively drug resistant (XDR) Salmonella Typhi","volume":"3","author":"Ahmad","year":"2024","journal-title":"NJLHS"},{"key":"ref3","doi-asserted-by":"publisher","first-page":"164","DOI":"10.1186\/s12866-023-02901-1","article-title":"Whole genome sequencing of Salmonella enterica serovars isolated from humans, animals, and the environment in Lagos, Nigeria","volume":"23","author":"Akinyemi","year":"2023","journal-title":"BMC Microbiol."},{"key":"ref4","doi-asserted-by":"publisher","first-page":"4752","DOI":"10.1038\/s41598-022-08903-9","article-title":"A role for the periplasmic adaptor protein AcrA in vetting substrate access to the RND efflux transporter AcrB","volume":"12","author":"Alav","year":"2022","journal-title":"Sci. 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