{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,30]],"date-time":"2026-06-30T04:26:38Z","timestamp":1782793598493,"version":"3.54.5"},"reference-count":59,"publisher":"Frontiers Media SA","funder":[{"DOI":"10.13039\/501100000923","name":"Australian Research Council Discovery Project","doi-asserted-by":"publisher","award":["DP130101186"],"award-info":[{"award-number":["DP130101186"]}],"id":[{"id":"10.13039\/501100000923","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Plant Sci."],"DOI":"10.3389\/fpls.2015.01102","type":"journal-article","created":{"date-parts":[[2015,12,16]],"date-time":"2015-12-16T06:54:11Z","timestamp":1450248851000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":13,"title":["Dosage Sensitivity of RPL9 and Concerted Evolution of Ribosomal Protein Genes in Plants"],"prefix":"10.3389","volume":"6","author":[{"given":"Deborah","family":"Devis","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sue M.","family":"Firth","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhe","family":"Liang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mary E.","family":"Byrne","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1965","published-online":{"date-parts":[[2015,12,16]]},"reference":[{"key":"B1","doi-asserted-by":"publisher","first-page":"131","DOI":"10.3390\/genes2010131","article-title":"Gene duplication and ectopic gene conversion in Drosophila.","volume":"2","author":"Arguello","year":"2011","journal-title":"Genes"},{"key":"B2","doi-asserted-by":"publisher","first-page":"398","DOI":"10.1104\/pp.010265","article-title":"The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome.","volume":"127","author":"Barakat","year":"2001","journal-title":"Plant Physiol."},{"key":"B3","doi-asserted-by":"publisher","first-page":"14746","DOI":"10.1073\/pnas.1207726109","article-title":"Gene balance hypothesis: connecting issues of dosage sensitivity across biological disciplines.","volume":"109","author":"Birchler","year":"2012","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"B4","doi-asserted-by":"publisher","first-page":"137","DOI":"10.1101\/gr.751803","article-title":"A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome.","volume":"13","author":"Blanc","year":"2003","journal-title":"Genome Res."},{"key":"B5","doi-asserted-by":"publisher","first-page":"1679","DOI":"10.1105\/tpc.021410","article-title":"Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution.","volume":"16","author":"Blanc","year":"2004","journal-title":"Plant Cell"},{"key":"B6","doi-asserted-by":"publisher","first-page":"433","DOI":"10.1038\/nature01521","article-title":"Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events.","volume":"422","author":"Bowers","year":"2003","journal-title":"Nature"},{"key":"B7","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1016\/0022-2836(72)90521-9","article-title":"A comparison of the ribosomal DNA\u2019s of Xenopus laevis and Xenopus mulleri: the evolution of tandem genes.","volume":"63","author":"Brown","year":"1972","journal-title":"J. Mol. Biol."},{"key":"B8","doi-asserted-by":"publisher","first-page":"512","DOI":"10.1016\/j.tplants.2009.06.009","article-title":"A role for the ribosome in development.","volume":"14","author":"Byrne","year":"2009","journal-title":"Trends Plant Sci."},{"key":"B9","doi-asserted-by":"publisher","first-page":"347","DOI":"10.1074\/mcp.M700052-MCP200","article-title":"Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification.","volume":"7","author":"Carroll","year":"2007","journal-title":"Mol. Cell. Proteomics"},{"issue":"4122","key":"B10","doi-asserted-by":"publisher","DOI":"10.1038\/srep04122","article-title":"Combined haploinsufficiency and purifying selection drive retention of RPL36a paralogs in Arabidopsis.","volume":"4","author":"Casanova-S\u00e1ez","year":"2014","journal-title":"Sci. Rep."},{"key":"B11","doi-asserted-by":"publisher","first-page":"848","DOI":"10.1104\/pp.104.053637","article-title":"Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes.","volume":"137","author":"Chang","year":"2005","journal-title":"Plant Physiol."},{"key":"B12","doi-asserted-by":"publisher","first-page":"762","DOI":"10.1038\/nrg2193","article-title":"Gene conversion: mechanisms, evolution and human disease.","volume":"8","author":"Chen","year":"2007","journal-title":"Nat. Rev. Genet."},{"key":"B13","doi-asserted-by":"publisher","first-page":"735","DOI":"10.1046\/j.1365-313x.1998.00343.x","article-title":"Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.","volume":"16","author":"Clough","year":"1998","journal-title":"Plant J."},{"key":"B14","doi-asserted-by":"publisher","first-page":"273","DOI":"10.1046\/j.1365-313X.1996.09020273.x","article-title":"Two-dimensional RFLP analyses reveal megabase-sized clusters of rRNA gene variants in Arabidopsis thaliana, suggesting local spreading of variants as the mode for gene homogenization during concerted evolution.","volume":"9","author":"Copenhaver","year":"1996","journal-title":"Plant J."},{"key":"B15","doi-asserted-by":"publisher","first-page":"533","DOI":"10.1007\/s11103-010-9639-y","article-title":"The two Arabidopsis RPS6 genes, encoding for cytoplasmic ribosomal proteins S6, are functionally equivalent.","volume":"73","author":"Creff","year":"2010","journal-title":"Plant Mol. Biol."},{"key":"B16","doi-asserted-by":"publisher","first-page":"462","DOI":"10.1104\/pp.103.027979","article-title":"A gateway cloning vector set for high-throughput functional analysis of genes in planta.","volume":"133","author":"Curtis","year":"2003","journal-title":"Plant Physiol."},{"key":"B17","doi-asserted-by":"publisher","first-page":"128","DOI":"10.1104\/pp.107.111799","article-title":"Arabidopsis ribosomal proteins RPL23aA and RPL23aB are differentially targeted to the nucleolus and are desperately required for normal development.","volume":"147","author":"Degenhardt","year":"2008","journal-title":"Plant Physiol."},{"key":"B18","doi-asserted-by":"publisher","first-page":"93","DOI":"10.1146\/annurev-biochem-060614-033917","article-title":"Functions of ribosomal proteins in assembly of eukaryotic ribosomes in vivo.","volume":"84","author":"de la Cruz","year":"2015","journal-title":"Annu. Rev. Biochem."},{"key":"B19","doi-asserted-by":"publisher","first-page":"433","DOI":"10.1146\/annurev.arplant.043008.092122","article-title":"Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition.","volume":"60","author":"Freeling","year":"2009","journal-title":"Annu. Rev. Plant Biol."},{"key":"B20","doi-asserted-by":"publisher","first-page":"499","DOI":"10.1111\/j.1365-313X.2009.03886.x","article-title":"Coordination of cell proliferation and cell expansion mediated by ribosome-related processes in the leaves of Arabidopsis thaliana.","volume":"59","author":"Fujikura","year":"2009","journal-title":"Plant J."},{"key":"B21","doi-asserted-by":"publisher","first-page":"1367","DOI":"10.1126\/science.1102033","article-title":"Very low gene duplication rate in the yeast genome.","volume":"306","author":"Gao","year":"2004","journal-title":"Science"},{"key":"B22","doi-asserted-by":"publisher","first-page":"255","DOI":"10.1006\/geno.2001.6540","article-title":"Human rDNA: evolutionary patterns within the genes and tandem arrays derived from multiple chromosomes.","volume":"73","author":"Gonzalez","year":"2001","journal-title":"Genomics"},{"key":"B23","doi-asserted-by":"publisher","first-page":"D1178","DOI":"10.1093\/nar\/gkr944","article-title":"Phytozome: a comparative platform for green plant genomics.","volume":"40","author":"Goodstein","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"B24","doi-asserted-by":"publisher","first-page":"724","DOI":"10.1111\/j.1365-313X.2010.04457.x","article-title":"Differential contributions of ribosomal protein genes to Arabidopsis thaliana leaf development.","volume":"65","author":"Horiguchi","year":"2011","journal-title":"Plant J."},{"key":"B25","doi-asserted-by":"publisher","first-page":"24","DOI":"10.1016\/j.plantsci.2012.04.008","article-title":"Ribosomes and translation in plant developmental control.","volume":"19","author":"Horiguchi","year":"2012","journal-title":"Plant Sci."},{"key":"B26","doi-asserted-by":"publisher","first-page":"476","DOI":"10.1038\/ng.807","article-title":"The Arabidopsis lyrata genome sequence and the basis of rapid genome size change.","volume":"43","author":"Hu","year":"2011","journal-title":"Nat. Genet."},{"key":"B27","doi-asserted-by":"publisher","first-page":"1844","DOI":"10.1104\/pp.112.200147","article-title":"Prevalent role of gene features in determining evolutionary fates of whole-genome duplication duplicated genes in flowering plants.","volume":"161","author":"Jiang","year":"2013","journal-title":"Plant Physiol."},{"issue":"R112","key":"B28","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2008-9-7-r112","article-title":"At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana.","volume":"9","author":"Laubinger","year":"2008","journal-title":"Genome Biol."},{"key":"B29","doi-asserted-by":"publisher","first-page":"661","DOI":"10.1111\/j.1365-313X.2007.03326.x","article-title":"How to usefully compare homologous plant genes and chromosomes as DNA sequences.","volume":"53","author":"Lyons","year":"2008","journal-title":"Plant J."},{"key":"B30","doi-asserted-by":"publisher","first-page":"1772","DOI":"10.1104\/pp.108.124867","article-title":"Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids.","volume":"148","author":"Lyons","year":"2008","journal-title":"Plant Physiol."},{"key":"B31","doi-asserted-by":"publisher","first-page":"5454","DOI":"10.1073\/pnas.0501102102","article-title":"Modeling gene and genome duplications in eukaryotes.","volume":"102","author":"Maere","year":"2005","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"B32","doi-asserted-by":"publisher","first-page":"84","DOI":"10.1016\/j.tplants.2012.08.006","article-title":"A survey of dominant mutations in Arabidopsis thaliana.","volume":"18","author":"Meinke","year":"2013","journal-title":"Trends Plant Sci."},{"key":"B33","doi-asserted-by":"publisher","first-page":"560","DOI":"10.1038\/nsmb.2313","article-title":"One core, two shells: bacterial and eukaryotic ribosomes.","volume":"19","author":"Melnikov","year":"2012","journal-title":"Nat. Struct. Mol. Biol."},{"key":"B34","doi-asserted-by":"publisher","first-page":"194","DOI":"10.1038\/nature01771","article-title":"Dosage sensitivity and the evolution of gene families in yeast.","volume":"424","author":"Papp","year":"2003","journal-title":"Nature"},{"key":"B35","doi-asserted-by":"publisher","first-page":"9903","DOI":"10.1073\/pnas.0307901101","article-title":"Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics.","volume":"101","author":"Paterson","year":"2004","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"B36","doi-asserted-by":"publisher","first-page":"1315","DOI":"10.1242\/dev.016469","article-title":"Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins.","volume":"135","author":"Pinon","year":"2008","journal-title":"Development"},{"issue":"e115","key":"B37","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.0020115","article-title":"Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice.","volume":"2","author":"Rizzon","year":"2006","journal-title":"PLoS Comput. Biol."},{"key":"B38","doi-asserted-by":"publisher","first-page":"13953","DOI":"10.1073\/pnas.0804861105","article-title":"Molecular signatures of ribosomal evolution.","volume":"105","author":"Roberts","year":"2008","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"B39","doi-asserted-by":"publisher","first-page":"450","DOI":"10.4161\/psb.5.4.11341","article-title":"Application of the gene dosage balance hypothesis to auxin-related ribosomal mutants in Arabidopsis.","volume":"5","author":"Rosado","year":"2010","journal-title":"Plant Signal. Behav."},{"key":"B40","doi-asserted-by":"publisher","first-page":"143","DOI":"10.1105\/tpc.109.068320","article-title":"Auxin-mediated ribosomal biogenesis regulates vacuolar trafficking in Arabidopsis.","volume":"22","author":"Rosado","year":"2010","journal-title":"Plant Cell"},{"key":"B41","doi-asserted-by":"publisher","first-page":"1477","DOI":"10.1104\/pp.124.4.1477","article-title":"Seed and molecular resources for Arabidopsis.","volume":"124","author":"Scholl","year":"2000","journal-title":"Plant Physiol."},{"key":"B42","doi-asserted-by":"publisher","first-page":"13627","DOI":"10.1073\/pnas.212522399","article-title":"The hidden duplication past of Arabidopsis thaliana.","volume":"99","author":"Simillion","year":"2002","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"B43","doi-asserted-by":"publisher","first-page":"831","DOI":"10.1038\/ng.2669","article-title":"The Capsella rubella genome and the genomic consequences of rapid mating system evolution.","volume":"45","author":"Slotte","year":"2013","journal-title":"Nat. Genet."},{"key":"B44","doi-asserted-by":"publisher","first-page":"1888","DOI":"10.1101\/gr.6376807","article-title":"Sequence variation within the rRNA gene loci of 12 Drosophila species.","volume":"17","author":"Stage","year":"2007","journal-title":"Genome Res."},{"issue":"160","key":"B45","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2229-12-160","article-title":"Mutation of the cytosolic ribosomal protein-encoding RPS10B gene affects shoot meristematic function in Arabidopsis.","volume":"12","author":"Stirnberg","year":"2012","journal-title":"BMC Plant Biol."},{"key":"B46","doi-asserted-by":"publisher","first-page":"712","DOI":"10.4161\/psb.6.5.15070","article-title":"Involvement of ribosomal protein RPL27a in meristem activity and organ development.","volume":"6","author":"Szakonyi","year":"2011a","journal-title":"Plant Signal. Behav."},{"key":"B47","doi-asserted-by":"publisher","first-page":"269","DOI":"10.1111\/j.1365-313X.2010.04422.x","article-title":"Ribosomal protein L27a is required for growth and patterning in Arabidopsis thaliana.","volume":"65","author":"Szakonyi","year":"2011b","journal-title":"Plant J."},{"key":"B48","doi-asserted-by":"publisher","first-page":"2725","DOI":"10.1093\/molbev\/mst197","article-title":"MEGA6: molecular evolutionary genetics analysis version 6.0.","volume":"30","author":"Tamura","year":"2013","journal-title":"Mol. Biol. Evol."},{"key":"B49","doi-asserted-by":"publisher","first-page":"934","DOI":"10.1101\/gr.4708406","article-title":"Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes.","volume":"16","author":"Thomas","year":"2006","journal-title":"Genome Res."},{"key":"B50","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1080\/07391102.2006.10507096","article-title":"A survey of mRNA sequences with a non-AUG start codon in RefSeq database.","volume":"24","author":"Tikole","year":"2006","journal-title":"J. Biomol. Struct. Dyn."},{"key":"B51","doi-asserted-by":"publisher","first-page":"1206","DOI":"10.1104\/pp.104.045179","article-title":"Identification of genes required for embryo development in Arabidopsis.","volume":"135","author":"Tzafrir","year":"2004","journal-title":"Plant Physiol."},{"key":"B52","doi-asserted-by":"publisher","first-page":"680","DOI":"10.1016\/j.tplants.2009.09.001","article-title":"The flowering world: a tale of duplications.","volume":"14","author":"Van de Peer","year":"2009","journal-title":"Trends Plant Sci."},{"key":"B53","doi-asserted-by":"publisher","first-page":"175","DOI":"10.1002\/bies.10023","article-title":"Exploring the etiology of haploinsufficiency.","volume":"24","author":"Veitia","year":"2002","journal-title":"Bioessays"},{"key":"B54","doi-asserted-by":"publisher","first-page":"1035","DOI":"10.1038\/ng.919","article-title":"The genome of the mesopolyploid crop species Brassica rapa.","volume":"43","author":"Wang","year":"2011","journal-title":"Nat. Genet."},{"key":"B55","doi-asserted-by":"crossref","first-page":"4289","DOI":"10.1242\/dev.128.21.4289","article-title":"An Arabidopsis Minute-like phenotype caused by a semi-dominant mutation in a RIBOSOMAL PROTEIN S5 gene.","volume":"128","author":"Weijers","year":"2001","journal-title":"Development"},{"key":"B56","doi-asserted-by":"publisher","first-page":"355","DOI":"10.1038\/nrm3359","article-title":"Specialized ribosomes: a new frontier in gene regulation and organismal biology.","volume":"13","author":"Xue","year":"2012","journal-title":"Nat. Rev. Mol. Cell Biol."},{"issue":"46","key":"B57","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2013.00046","article-title":"The reference genome of the halophytic plant Eutrema salsugineum.","volume":"4","author":"Yang","year":"2013","journal-title":"Front. Plant Sci."},{"key":"B58","doi-asserted-by":"publisher","first-page":"1325","DOI":"10.1242\/dev.017913","article-title":"Ribosomal proteins promote leaf adaxial identity.","volume":"135","author":"Yao","year":"2008","journal-title":"Development"},{"key":"B59","doi-asserted-by":"publisher","first-page":"1133","DOI":"10.1104\/pp.114.241778","article-title":"Ribosomal protein RPL27a promotes female gametophyte development in a dose-dependent manner.","volume":"165","author":"Zs\u00f6g\u00f6n","year":"2014","journal-title":"Plant Physiol."}],"container-title":["Frontiers in Plant Science"],"original-title":[],"deposited":{"date-parts":[[2022,5,29]],"date-time":"2022-05-29T12:03:57Z","timestamp":1653825837000},"score":1,"resource":{"primary":{"URL":"http:\/\/journal.frontiersin.org\/Article\/10.3389\/fpls.2015.01102\/abstract"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,12,16]]},"references-count":59,"URL":"https:\/\/doi.org\/10.3389\/fpls.2015.01102","relation":{},"ISSN":["1664-462X"],"issn-type":[{"value":"1664-462X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,12,16]]}}}