{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,23]],"date-time":"2026-09-23T07:01:48Z","timestamp":1790146908459,"version":"4.0.1"},"reference-count":70,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2026,9,23]],"date-time":"2026-09-23T00:00:00Z","timestamp":1790121600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Plant Sci."],"abstract":"<jats:p>\n                    Anthracnose fruit rot caused by\n                    <jats:italic>Colletotrichum truncatum<\/jats:italic>\n                    is a major constraint in Chilli production, leading to heavy pre- and post-harvest losses. Developing resistant cultivars through marker-assisted breeding is the most sustainable management strategy. Identification of molecular markers tightly linked to anthracnose fruit rot resistance loci in\n                    <jats:italic>Capsicum baccatum<\/jats:italic>\n                    accessions will be of great use in chili crop improvement programs to introgress resistance loci into elite backgrounds. Inheritance studies in an F\u2082 population (IIHR 4491 \u00d7 PBC81) indicated inhibitory gene action (13S:3R) governing resistance against\n                    <jats:italic>C. truncatum<\/jats:italic>\n                    isolate IIHR Ct-1. Genotyping-by-sequencing identified 8,644 high-quality single nucleotide polymorphism (SNP) markers distributed across all chromosomes, ranging from 533 on chromosome 5 to 1,130 on chromosome 3.\u00a0A genome-wide association study identified 19 SNPs significantly associated with resistance mainly on chromosomes 2 and 6. The two quantitative trait locus (QTL) regions were further refined to 836.18 kb on chromosome 2 (\n                    <jats:italic>AnR-PBC81-C2<\/jats:italic>\n                    ) and 135.15 kb on chromosome 6 (\n                    <jats:italic>AnR-PBC81-C6<\/jats:italic>\n                    ) through target loci-based QTL mapping. Epistasis analyses indicated significant epistatic interactions between these two QTL hotspots. Seventeen candidate genes involved in plant defense mechanisms were predicted within these regions. The identified markers were also validated in another F\u2082 population (IHR4491 \u00d7 PBC80). Meta-QTL analysis identified 36 MQTLs, with\n                    <jats:italic>AnR-PBC81-C2<\/jats:italic>\n                    assigned to MQTL2.2. The QTL on chromosome 6 (\n                    <jats:italic>AnR-PBC81-C6<\/jats:italic>\n                    ) did not colocalize with any previously reported QTLs, indicating that it represents a novel resistance locus. The refined QTLs and associated developed SSR markers can be utilized to accelerate marker-assisted introgression breeding for anthracnose fruit rot disease resistance.\n                  <\/jats:p>","DOI":"10.3389\/fpls.2026.1809315","type":"journal-article","created":{"date-parts":[[2026,9,23]],"date-time":"2026-09-23T06:19:52Z","timestamp":1790144392000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":0,"title":["QTL mapping and identification of linked markers for anthracnose fruit rot resistance in Capsicum baccatum L."],"prefix":"10.3389","volume":"17","author":[{"given":"Karishma","family":"Pasupula","sequence":"first","affiliation":[{"name":"Division of Vegetable Crops, Indian Council of Agricultural Research (ICAR)\u2013Indian Institute of Horticultural Research","place":["Bengaluru, Karnataka, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Vanlalneihi","family":"Bawitlung","sequence":"additional","affiliation":[{"name":"Division of Vegetable Crops, Indian Council of Agricultural Research (ICAR)\u2013Indian Institute of Horticultural Research","place":["Bengaluru, Karnataka, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Krishna Sai","family":"Karnatam","sequence":"additional","affiliation":[{"name":"School of Agricultural Biotechnology, Punjab Agricultural University","place":["Ludhiana, Punjab, India"]},{"name":"Department of Biology, Gus R. Douglass Institute, West Virginia State University","place":["Institute, WV, United States"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sriram","family":"Subbaraman","sequence":"additional","affiliation":[{"name":"Division of Crop Protection, Indian Council of Agricultural Research (ICAR)\u2013Indian Institute of Horticultural Research","place":["Bengaluru, Karnataka, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Anand Kumar","family":"reddy Chinthaparth","sequence":"additional","affiliation":[{"name":"Division of Vegetable Crops, Indian Council of Agricultural Research (ICAR)\u2013Indian Institute of Horticultural Research","place":["Bengaluru, Karnataka, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Manoj","family":"Balenahalli Parameshwaraiah","sequence":"additional","affiliation":[{"name":"Division of Vegetable Crops, Indian Council of Agricultural Research (ICAR)\u2013Indian Institute of Horticultural Research","place":["Bengaluru, Karnataka, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mahebub","family":"Shaik","sequence":"additional","affiliation":[{"name":"Division of Vegetable Crops, Indian Council of Agricultural Research (ICAR)\u2013Indian Institute of Horticultural Research","place":["Bengaluru, Karnataka, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sandeep Kumar","family":"Gullahalli Manjegowda","sequence":"additional","affiliation":[{"name":"Division of Crop Protection, Indian Council of Agricultural Research (ICAR)\u2013Indian Institute of Horticultural Research","place":["Bengaluru, Karnataka, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lakshmana Reddy","family":"Dhoranapalli Chinnappareddy","sequence":"additional","affiliation":[{"name":"Division of Basic Sciences, Indian Council of Agricultural Research (ICAR)\u2013Indian Institute of Horticultural Research","place":["Bengaluru, Karnataka, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Naresh","family":"Ponnam","sequence":"additional","affiliation":[{"name":"Division of Vegetable Crops, Indian Council of Agricultural Research (ICAR)\u2013Indian Institute of Horticultural Research","place":["Bengaluru, Karnataka, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Madhavi Reddy","family":"Kambham","sequence":"additional","affiliation":[{"name":"Division of Vegetable Crops, Indian Council of Agricultural Research (ICAR)\u2013Indian Institute of Horticultural Research","place":["Bengaluru, Karnataka, India"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1965","published-online":{"date-parts":[[2026,9,23]]},"reference":[{"key":"B1","doi-asserted-by":"publisher","first-page":"7815","DOI":"10.3390\/ijms14047815","article-title":"Plant bZIP transcription factors responsive to pathogens: a review","volume":"14","author":"Alves","year":"2013","journal-title":"Int. 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