{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,11]],"date-time":"2026-09-11T05:07:23Z","timestamp":1789103243622,"version":"build-2803163510"},"reference-count":86,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2026,9,11]],"date-time":"2026-09-11T00:00:00Z","timestamp":1789084800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Plant Sci."],"abstract":"<jats:p>\n                    <jats:italic>Hibiscus hamabo<\/jats:italic>\n                    is an important coastal ornamental plant and a pioneer tree species for coastal protection forests. Prolonged waterlogging severely restricts its ecological expansion toward the intertidal\u2011zone forefront and limits population regeneration; clarifying its waterlogging\u2011adaptation mechanisms is essential for coastal wetland ecological restoration. In this study, phenotypic, physiological and transcriptomic responses of\n                    <jats:italic>H. hamabo<\/jats:italic>\n                    under 3-, 9-, and 18-day waterlogging treatments were characterized. Prolonged waterlogging markedly suppressed plant growth and biomass accumulation, and impaired photosynthetic performance via pigment degradation and stomatal closure. To counteract oxidative injury,\n                    <jats:italic>H. hamabo<\/jats:italic>\n                    sequentially triggered osmotic\u2011adjustment and antioxidant\u2011defense systems, relying on soluble sugars, proline and ROS\u2011scavenging enzymes. Transcriptome profiling identified stage\u2011dependent gene expression changes mainly related to photosynthesis, hormone signaling and phenylpropanoid biosynthesis. WGCNA uncovered two core co\u2011expression modules with opposite functional roles, representing stress\u2011defense activation and growth repression, respectively, and hub genes for osmotic homeostasis, ROS detoxification and photosynthesis preservation were screened. Collectively, our findings illustrate the coordinated adaptive strategy of\n                    <jats:italic>H. hamabo<\/jats:italic>\n                    against waterlogging stress and supply promising candidate genes for breeding waterlogging\u2011tolerant coastal woody plants.\n                  <\/jats:p>","DOI":"10.3389\/fpls.2026.1882944","type":"journal-article","created":{"date-parts":[[2026,9,11]],"date-time":"2026-09-11T04:29:53Z","timestamp":1789100993000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":0,"title":["Integrated morpho-physiological and transcriptomic dissection of waterlogging tolerance in Hibiscus hamabo"],"prefix":"10.3389","volume":"17","author":[{"given":"Huizi","family":"Liu","sequence":"first","affiliation":[{"name":"Zhejiang Institute of Subtropical Crops, Zhejiang Academy of Agricultural Sciences","place":["Wenzhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sheng","family":"Yang","sequence":"additional","affiliation":[{"name":"Zhejiang Institute of Subtropical Crops, Zhejiang Academy of Agricultural Sciences","place":["Wenzhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhixia","family":"Zhao","sequence":"additional","affiliation":[{"name":"Zhejiang Institute of Subtropical Crops, Zhejiang Academy of Agricultural Sciences","place":["Wenzhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xuan","family":"Wang","sequence":"additional","affiliation":[{"name":"Zhejiang Institute of Subtropical Crops, Zhejiang Academy of Agricultural Sciences","place":["Wenzhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaomin","family":"Zhang","sequence":"additional","affiliation":[{"name":"Zhejiang Institute of Subtropical Crops, Zhejiang Academy of Agricultural Sciences","place":["Wenzhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dandan","family":"Kong","sequence":"additional","affiliation":[{"name":"Zhejiang Forestry Resources Development Co., Ltd.","place":["Wenzhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Siyang","family":"Jin","sequence":"additional","affiliation":[{"name":"Zhejiang Institute of Subtropical Crops, Zhejiang Academy of Agricultural Sciences","place":["Wenzhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Qiuxia","family":"Chen","sequence":"additional","affiliation":[{"name":"Zhejiang Institute of Subtropical Crops, Zhejiang Academy of Agricultural Sciences","place":["Wenzhou, China"]},{"name":"Engineering Research Center for Southeast Coastal Characteristic Plants of National Forestry and Grassland Administration","place":["Wenzhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xing","family":"Liu","sequence":"additional","affiliation":[{"name":"Zhejiang Institute of Subtropical Crops, Zhejiang Academy of Agricultural Sciences","place":["Wenzhou, China"]},{"name":"Engineering Research Center for Southeast Coastal Characteristic Plants of National Forestry and Grassland Administration","place":["Wenzhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1965","published-online":{"date-parts":[[2026,9,11]]},"reference":[{"key":"B1","doi-asserted-by":"publisher","first-page":"1618","DOI":"10.1111\/j.1365-3040.2012.02513.x","article-title":"Enhanced formation of aerenchyma and induction of a barrier to radial oxygen loss in adventitious roots of Zea nicaraguensis contribute to its waterlogging tolerance as compared with maize (Zea mays ssp. mays)","volume":"35","author":"Abiko","year":"2012","journal-title":"Plant Cell. & Environ."},{"key":"B2","doi-asserted-by":"publisher","first-page":"933","DOI":"10.1111\/tpj.13950","article-title":"Metabolomics 20 years on: what have we learned and what hurdles remain","volume":"94","author":"Alseekh","year":"2018","journal-title":"Plant J."},{"key":"B3","doi-asserted-by":"publisher","first-page":"1850","DOI":"10.1080\/24694452.2022.2047593","article-title":"Precise elevation thresholds associated with salt marsh\u2013upland ecotones along the Mississippi Gulf Coast","volume":"112","author":"Anderson","year":"2022","journal-title":"Ann. Am. Assoc. Geogr."},{"key":"B4","doi-asserted-by":"publisher","first-page":"313","DOI":"10.1146\/annurev.arplant.59.032607.092752","article-title":"Flooding stress: acclimations and genetic diversity","volume":"59","author":"Bailey-Serres","year":"2008","journal-title":"Annu. Rev. Plant Biol."},{"key":"B5","doi-asserted-by":"publisher","first-page":"964","DOI":"10.1111\/j.1469-8137.2008.02483.x","article-title":"Flooding tolerance in halophytes","volume":"179","author":"Colmer","year":"2008","journal-title":"New Phytol."},{"key":"B6","doi-asserted-by":"publisher","DOI":"10.1093\/hr\/uhac001","article-title":"Time-course analysis and transcriptomic identification of key response strategies of Nelumbo nucifera to complete submergence","volume":"9","author":"Deng","year":"2022","journal-title":"Hortic. Res."},{"key":"B7","doi-asserted-by":"publisher","first-page":"6230","DOI":"10.1093\/jxb\/eraf203","article-title":"An overview of low-oxygen sensing and flooding responses of tomato","volume":"76","author":"Eerdekens","year":"2025","journal-title":"J. Exp. Bot."},{"key":"B8","doi-asserted-by":"publisher","first-page":"85","DOI":"10.1016\/s0168-9452(03)00146-8","article-title":"Importance of active oxygen-scavenging system in the recovery of rice seedlings after submergence","volume":"165","author":"Ella","year":"2003","journal-title":"Plant Sci."},{"key":"B9","doi-asserted-by":"publisher","first-page":"979","DOI":"10.1016\/j.molp.2023.04.002","article-title":"Calcium-dependent activation of CPK12 facilitates its cytoplasm-to-nucleus translocation to potentiate plant hypoxia sensing by phosphorylating ERF-VII transcription factors","volume":"16","author":"Fan","year":"2023","journal-title":"Mol. Plant"},{"key":"B10","doi-asserted-by":"publisher","first-page":"281","DOI":"10.1038\/s41586-022-05572-6","article-title":"Extensive global wetland loss over the past three centuries","volume":"614","author":"Fluet-Chouinard","year":"2023","journal-title":"Nature"},{"key":"B11","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2019.00340","article-title":"Submergence and waterlogging stress in plants: a review highlighting research opportunities and understudied aspects","volume":"10","author":"Fukao","year":"2019","journal-title":"Front. Plant Sci."},{"key":"B12","doi-asserted-by":"publisher","first-page":"3295","DOI":"10.3390\/plants14213295","article-title":"Physiological and molecular adaptation of the Ahuehuete (Taxodium mucronatum Ten.) to waterlogging","volume":"14","author":"Gao","year":"2025","journal-title":"Plants"},{"key":"B13","doi-asserted-by":"publisher","first-page":"415","DOI":"10.1038\/nature10534","article-title":"Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants","volume":"479","author":"Gibbs","year":"2011","journal-title":"Nature"},{"key":"B14","doi-asserted-by":"publisher","first-page":"1052","DOI":"10.1111\/jipb.13647","article-title":"ACBP4-WRKY70-RAP2.12 module positively regulates submergence-induced hypoxia response in Arabidopsis thaliana","volume":"66","author":"Guo","year":"2024","journal-title":"J. Integr. Plant Biol."},{"key":"B15","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2017.00785","article-title":"Effects of melatonin on anti-oxidative systems and photosystem II in cold-stressed rice seedlings","volume":"8","author":"Han","year":"2017","journal-title":"Front. Plant Sci."},{"key":"B16","doi-asserted-by":"publisher","DOI":"10.3390\/ijms21228695","article-title":"Regulation of ROS metabolism in plants under environmental stress: a review of recent experimental evidence","volume":"21","author":"Hasanuzzaman","year":"2020","journal-title":"Int. J. Mol. Sci."},{"key":"B17","doi-asserted-by":"publisher","first-page":"1026","DOI":"10.1038\/nature08258","article-title":"The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water","volume":"460","author":"Hattori","year":"2009","journal-title":"Nature"},{"key":"B18","doi-asserted-by":"publisher","first-page":"183","DOI":"10.1071\/fp09172","article-title":"The contrasting influence of short-term hypoxia on the hydraulic properties of cells and roots of wheat and lupin","author":"Helen","year":"2010"},{"key":"B19","doi-asserted-by":"publisher","first-page":"83","DOI":"10.1016\/j.fcr.2013.01.007","article-title":"The contribution of submergence-tolerant (Sub1) rice varieties to food security in flood-prone rainfed lowland areas in Asia","volume":"152","author":"Ismail","year":"2013","journal-title":"Field Crops Res."},{"key":"B20","doi-asserted-by":"publisher","DOI":"10.1016\/j.envexpbot.2021.104582","article-title":"Stress-inducible expression of chalcone isomerase2 gene improves accumulation of flavonoids and imparts enhanced abiotic stress tolerance to rice","volume":"190","author":"Jayaraman","year":"2021","journal-title":"Environ. Exp. Bot."},{"key":"B21","doi-asserted-by":"publisher","first-page":"1088","DOI":"10.3390\/ijms22031088","article-title":"Plant morphological, physiological and anatomical adaption to flooding stress and the underlying molecular mechanisms","volume":"22","author":"Jia","year":"2021","journal-title":"Int. J. Mol. Sci."},{"key":"B22","doi-asserted-by":"publisher","DOI":"10.3390\/ijms23031243","article-title":"Salicylic acid enhances adventitious root and aerenchyma formation in Wheat under waterlogged conditions","volume":"23","author":"Koramutla","year":"2022","journal-title":"Int. J. Mol. Sci."},{"key":"B23","doi-asserted-by":"publisher","first-page":"2245","DOI":"10.1111\/pce.12310","article-title":"Molecular and physiological responses of trees to waterlogging stress","volume":"37","author":"Kreuzwieser","year":"2014","journal-title":"Plant Cell. & Environ."},{"key":"B24","doi-asserted-by":"publisher","first-page":"1056","DOI":"10.1016\/j.chemosphere.2012.05.070","article-title":"Lead toxicity, defense strategies and associated indicative biomarkers in Talinum triangulare grown hydroponically","volume":"89","author":"Kumar","year":"2012","journal-title":"Chemosphere"},{"key":"B25","doi-asserted-by":"publisher","first-page":"181","DOI":"10.1126\/science.aat1577","article-title":"Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding","volume":"361","author":"Kuroha","year":"2018","journal-title":"Science"},{"key":"B26","doi-asserted-by":"publisher","first-page":"1558","DOI":"10.1111\/nph.15070","article-title":"Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance","volume":"218","author":"Kurokawa","year":"2018","journal-title":"New Phytol."},{"key":"B27","doi-asserted-by":"publisher","first-page":"58","DOI":"10.1104\/pp.125.1.58","article-title":"Ecological arsenal and developmental dispatcher. The paradigm of secondary metabolism","volume":"125","author":"Kutchan","year":"2001","journal-title":"Plant Physiol."},{"key":"B28","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-9-559","article-title":"WGCNA: an R package for weighted correlation network analysis","volume":"9","author":"Langfelder","year":"2008","journal-title":"BMC Bioinf."},{"key":"B29","doi-asserted-by":"publisher","first-page":"357","DOI":"10.1038\/nmeth.1923","article-title":"Fast gapped-read alignment with Bowtie 2","volume":"9","author":"Langmead","year":"2012","journal-title":"Nat. Methods"},{"key":"B30","doi-asserted-by":"publisher","DOI":"10.1016\/j.envexpbot.2019.103807","article-title":"The Arabidopsis MYB transcription factor, MYB111 modulates salt responses by regulating flavonoid biosynthesis","volume":"166","author":"Li","year":"2019","journal-title":"Environ. Exp. Bot."},{"key":"B31","article-title":"Uncovering the secrets of how plants adapt to water stress","volume-title":"Plant Cell Environ","author":"Li","year":"2025"},{"key":"B32","doi-asserted-by":"publisher","first-page":"30","DOI":"10.1016\/j.envpol.2010.09.031","article-title":"Root porosity and radial oxygen loss related to arsenic tolerance and uptake in wetland plants","volume":"159","author":"Li","year":"2011","journal-title":"Environ. pollut."},{"key":"B33","doi-asserted-by":"publisher","first-page":"1747","DOI":"10.1007\/s13213-014-0871-6","article-title":"Salt tolerance of Hibiscus hamabo seedlings: a candidate halophyte for reclamation areas","volume":"34","author":"Li","year":"2012","journal-title":"Acta Physiol. Plant"},{"key":"B34","doi-asserted-by":"publisher","first-page":"90","DOI":"10.1007\/s13157-022-01589-9","article-title":"Degradation and ecological restoration of estuarine wetlands in China","volume":"42","author":"Li","year":"2022","journal-title":"Wetlands"},{"key":"B35","doi-asserted-by":"publisher","first-page":"42","DOI":"10.1016\/j.molp.2024.11.013","article-title":"Allelic variation in the promoter of WRKY22 enhances humid adaptation of Arabidopsis thaliana","volume":"18","author":"Liang","year":"2025","journal-title":"Mol. Plant"},{"key":"B36","doi-asserted-by":"publisher","first-page":"419","DOI":"10.1038\/nature10536","article-title":"Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization","volume":"479","author":"Licausi","year":"2011","journal-title":"Nature"},{"key":"B37","doi-asserted-by":"publisher","first-page":"2194","DOI":"10.1038\/nprot.2014.147","article-title":"A simple improved-throughput xylem protoplast system for studying wood formation","volume":"9","author":"Lin","year":"2014","journal-title":"Nat. protocol"},{"key":"B38","doi-asserted-by":"publisher","first-page":"4324","DOI":"10.1105\/tpc.113.117697","article-title":"SND1 transcription factor-directed quantitative functional hierarchical genetic regulatory network in wood formation in Populus trichocarpa","volume":"25","author":"Lin","year":"2013","journal-title":"Plant Cell"},{"key":"B39","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2024.1354249","article-title":"Molecular mechanism of salinity and waterlogging tolerance in mangrove Kandelia obovata","volume":"15","author":"Liu","year":"2024","journal-title":"Front. Plant Sci."},{"key":"B40","doi-asserted-by":"publisher","first-page":"1429","DOI":"10.3390\/ijms13045112","article-title":"Genome-wide identification and analysis of MYB transcription factor family in Hibiscus hamabo","volume":"12","author":"Liu","year":"2023","journal-title":"Plants"},{"key":"B41","doi-asserted-by":"publisher","first-page":"1771","DOI":"10.1093\/plcell\/koab062","article-title":"The ubiquitin E3 ligase SR1 modulates the submergence response by degrading phosphorylated WRKY33 in Arabidopsis","volume":"33","author":"Liu","year":"2021","journal-title":"Plant Cell"},{"key":"B42","doi-asserted-by":"publisher","DOI":"10.1016\/j.marpolbul.2023.115598","article-title":"Physiological and transcriptomic analysis of the mangrove species Kandelia obovata in response to flooding stress","volume":"196","author":"Liu","year":"2023","journal-title":"Mar. pollut. Bull."},{"key":"B43","doi-asserted-by":"publisher","DOI":"10.3390\/plants9060745","article-title":"The many facets of hypoxia in plants","volume":"9","author":"Loreti","year":"2020","journal-title":"Plants"},{"key":"B44","doi-asserted-by":"publisher","DOI":"10.1126\/sciadv.abn8281","article-title":"Allelic shift in cis-elements of the transcription factor RAP2.12 underlies adaptation associated with humidity in Arabidopsis thaliana","volume":"8","author":"Lou","year":"2022","journal-title":"Sci. Adv."},{"key":"B45","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-014-0550-8","article-title":"Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2","volume":"15","author":"Love","year":"2014","journal-title":"Genome Biol."},{"key":"B46","doi-asserted-by":"publisher","DOI":"10.3390\/agronomy13010171","article-title":"Superior antioxidant capacity and auxin production promote seedling formation of rice seeds under submergence stress","volume":"13","author":"Lu","year":"2023","journal-title":"Agronomy"},{"key":"B47","doi-asserted-by":"publisher","first-page":"1607","DOI":"10.1007\/s11738-012-0988-9","article-title":"Tocopherol biosynthesis: chemistry, regulation and effects of environmental factors","volume":"34","author":"Lushchak","year":"2012","journal-title":"Acta Physiol. Plant"},{"key":"B48","doi-asserted-by":"publisher","first-page":"826","DOI":"10.1038\/s43017-021-00224-1","article-title":"Blue carbon as a natural climate solution","volume":"2","author":"Macreadie","year":"2021","journal-title":"Nat. Rev. Earth Environ."},{"key":"B49","doi-asserted-by":"publisher","DOI":"10.3389\/fmars.2023.1231928","article-title":"Eco-physiological response mechanism of Tamarix chinensis to soil water changes in coastal wetlands of the Yellow River Delta","volume":"10","author":"Mao","year":"2023","journal-title":"Front. Mar. Sci."},{"key":"B50","doi-asserted-by":"publisher","first-page":"1841","DOI":"10.1111\/nph.70542","article-title":"The WRKY76-miR528-SOD2 module: regulating submergence tolerance through ROS scavenging in sorghum","volume":"248","author":"Meng","year":"2025","journal-title":"New Phytol."},{"key":"B51","doi-asserted-by":"publisher","first-page":"283","DOI":"10.1093\/jxb\/erj015","article-title":"Photosynthetic consequences of phenotypic plasticity in response to submergence: Rumex palustris as a case study","volume":"57","author":"Mommer","year":"2006","journal-title":"J. Exp. Bot."},{"key":"B52","doi-asserted-by":"publisher","first-page":"8748","DOI":"10.3390\/ijms22168748","article-title":"Genome-wide analysis of basic helix-loop-helix family genes and expression analysis in response to drought and salt stresses in Hibiscus hamabo sieb. et zucc","volume":"22","author":"Ni","year":"2021","journal-title":"Int. J. Mol. Sci."},{"key":"B53","doi-asserted-by":"publisher","DOI":"10.1016\/j.plantsci.2022.111260","article-title":"Genome-wide study of the GRAS gene family in Hibiscus hamabo Sieb. et Zucc and analysis of HhGRAS14-induced drought and salt stress tolerance in Arabidopsis","volume":"319","author":"Ni","year":"2022","journal-title":"Plant Sci."},{"key":"B54","doi-asserted-by":"publisher","first-page":"28","DOI":"10.1186\/s12870-016-0717-4","article-title":"Lignin biosynthesis in wheat (Triticum aestivum L.): its response to waterlogging and association with hormonal levels","volume":"16","author":"Nguyen","year":"2016","journal-title":"BMC Plant Biology"},{"key":"B55","doi-asserted-by":"publisher","first-page":"42","DOI":"10.1111\/nph.16375","article-title":"Regulation of root adaptive anatomical and morphological traits during low soil oxygen","volume":"229","author":"Pedersen","year":"2021","journal-title":"New Phytol."},{"key":"B56","doi-asserted-by":"publisher","first-page":"1223","DOI":"10.1111\/j.1365-3040.2011.02318.x","article-title":"Stagnant deoxygenated growth enhances root suberization and lignifications, but differentially affects water and NaCl permeabilities in rice (Oryza sativa L.) roots","volume":"34","author":"Ranathunge","year":"2011","journal-title":"Plant Cell Environ."},{"key":"B57","doi-asserted-by":"publisher","first-page":"1351","DOI":"10.1007\/s00425-015-2254-z","article-title":"A small, differentially regulated family of farnesyl diphosphate synthases in maize (Zea mays) provides farnesyl diphosphate for the biosynthesis of herbivore-induced sesquiterpenes","volume":"241","author":"Richter","year":"2015","journal-title":"Planta"},{"key":"B58","doi-asserted-by":"publisher","DOI":"10.3390\/antiox10020277","article-title":"Abiotic stress and reactive oxygen species: generation, signaling, and defense mechanisms","volume":"10","author":"Sachdev","year":"2021","journal-title":"Antioxidants"},{"key":"B59","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2025.1603355","article-title":"Divergent effects of successive drought and flooding on photosynthesis in wheat and barley","volume":"16","author":"Saha","year":"2025","journal-title":"Front. Plant Sci."},{"key":"B60","doi-asserted-by":"publisher","first-page":"112","DOI":"10.1038\/s41586-023-06448-z","article-title":"Widespread retreat of coastal habitat is likely at warming levels above 1.5 degrees C","volume":"621","author":"Saintilan","year":"2023","journal-title":"Nature"},{"key":"B61","doi-asserted-by":"publisher","DOI":"10.1016\/j.scienta.2019.109167","article-title":"Determination of nuclear DNA content, ploidy, and FISH location of ribosomal DNA in Hibiscus hamabo","volume":"264","author":"Sakhanokho","year":"2020","journal-title":"Sci. Hortic."},{"key":"B62","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1104\/pp.15.00387","article-title":"Ethylene-mediated acclimations to flooding stress","volume":"169","author":"Sasidharan","year":"2015","journal-title":"Plant Physiol."},{"key":"B63","doi-asserted-by":"publisher","first-page":"282","DOI":"10.1016\/j.pbi.2013.03.013","article-title":"Root responses to flooding","volume":"16","author":"Sauter","year":"2013","journal-title":"Curr. Opin. Plant Biol."},{"key":"B64","doi-asserted-by":"publisher","DOI":"10.1016\/j.plaphy.2024.109101","article-title":"Physiological, molecular, and morphological adjustment to waterlogging stress in ramie and selection of waterlogging-tolerant varieties","volume":"216","author":"Shao","year":"2024","journal-title":"Plant Physiol. Biochem."},{"key":"B65","doi-asserted-by":"publisher","first-page":"430","DOI":"10.32615\/ps.2022.033","article-title":"Ultrastructure, adaptability, and alleviation mechanisms of photosynthetic apparatus in plants under waterlogging: A review","volume":"60","author":"Sharma","year":"2022","journal-title":"Photosynthetica"},{"key":"B66","doi-asserted-by":"publisher","first-page":"277","DOI":"10.1093\/aob\/mcq123","article-title":"Stem hypertrophic lenticels and secondary aerenchyma enable oxygen transport to roots of soybean in flooded soil","volume":"106","author":"Shimamura","year":"2010","journal-title":"Ann. Bot."},{"key":"B67","doi-asserted-by":"publisher","first-page":"655","DOI":"10.1111\/nph.17751","article-title":"Abscisic acid is required for exodermal suberization to form a barrier to radial oxygen loss in the adventitious roots of rice (Oryza sativa)","volume":"233","author":"Shiono","year":"2022","journal-title":"New Phytol."},{"key":"B68","doi-asserted-by":"publisher","first-page":"2094619","DOI":"10.1080\/15592324.2022.2094619","article-title":"Physiological and comparative transcriptome analysis of the response and adaptation mechanism of the photosynthetic function of mulberry (Morus alba L.) leaves to flooding stress","volume":"17","author":"Su","year":"2022","journal-title":"Plant Signaling & Behavior"},{"key":"B69","doi-asserted-by":"publisher","first-page":"2350","DOI":"10.1111\/pce.12277","article-title":"Physiological and transcriptomic characterization of submergence and reoxygenation responses in soybean seedlings","volume":"37","author":"Tamang","year":"2014","journal-title":"Plant Cell. & Environ."},{"key":"B70","doi-asserted-by":"publisher","first-page":"106","DOI":"10.1111\/nph.17020","article-title":"WRKY33 interacts with WRKY12 protein to up-regulate RAP2.2 during submergence induced hypoxia response in Arabidopsis thaliana","volume":"229","author":"Tang","year":"2021","journal-title":"New Phytol."},{"key":"B71","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1111\/nph.13209","article-title":"Flood adaptive traits and processes: an overview","volume":"206","author":"Voesenek","year":"2015","journal-title":"New Phytol."},{"key":"B72","doi-asserted-by":"publisher","first-page":"385","DOI":"10.1186\/s12870-024-05091-8","article-title":"Transcriptome and metabolome analyses reveal molecular insights into waterlogging tolerance in barley","volume":"24","author":"Wang","year":"2024","journal-title":"BMC Plant Biology"},{"key":"B73","doi-asserted-by":"publisher","first-page":"3055","DOI":"10.3390\/plants15081163","article-title":"Genome-wide identification and characterization of NAC family in Hibiscus hamabo Sieb. et zucc. under various abiotic stresses","volume":"23","author":"Wang","year":"2022","journal-title":"Int. J. Mol. Sci."},{"key":"B74","doi-asserted-by":"publisher","first-page":"440","DOI":"10.1111\/jipb.13880","article-title":"Survival mechanisms of plants under hypoxic stress: Physiological acclimation and molecular regulation","volume":"67","author":"Wang","year":"2025","journal-title":"J. Integr. Plant Biol."},{"key":"B75","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0156228","article-title":"Efficient virus-induced gene silencing in Hibiscus hamabo Sieb. et Zucc. using tobacco rattle virus","volume":"7","author":"Wang","year":"2019","journal-title":"PeerJ"},{"key":"B76","doi-asserted-by":"publisher","first-page":"uhac067","DOI":"10.1093\/hr\/uhac067","article-title":"The genome of Hibiscus hamabo reveals its adaptation to saline and waterlogged habitat","volume":"9","author":"Wang","year":"2022","journal-title":"Hortic. Res."},{"key":"B77","doi-asserted-by":"publisher","first-page":"312","DOI":"10.1111\/pce.14243","article-title":"ZmERF21 directly regulates hormone signaling and stress-responsive gene expression to influence drought tolerance in maize seedlings","volume":"45","author":"Wang","year":"2022","journal-title":"Plant Cell Environ."},{"key":"B78","doi-asserted-by":"publisher","first-page":"387","DOI":"10.1007\/s11240-016-0953-1","article-title":"A grape bHLH transcription factor gene, VvbHLH1, increases the accumulation of flavonoids and enhances salt and drought tolerance in transgenic Arabidopsis thaliana","volume":"125","author":"Wang","year":"2016","journal-title":"Plant Cell Tissue Organ Cult."},{"key":"B79","doi-asserted-by":"publisher","first-page":"280","DOI":"10.1016\/j.ecss.2013.10.028","article-title":"Photosynthetic and physiological responses of native and exotic tidal woody seedlings to simulated tidal immersion","volume":"135","author":"Wu","year":"2013","journal-title":"Estuar. Coast. Shelf Sci."},{"key":"B80","doi-asserted-by":"publisher","first-page":"705","DOI":"10.1038\/nature04920","article-title":"Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice","volume":"442","author":"Xu","year":"2006","journal-title":"Nature"},{"key":"B81","doi-asserted-by":"crossref","first-page":"3683","DOI":"10.4028\/www.scientific.net\/AMR.955-959.3683","article-title":"Current status of Hangjiahu Plain wetlands resources and proposals for protection and management","author":"Yan","year":"2014","journal-title":"Advanced Materials Res."},{"key":"B82","doi-asserted-by":"publisher","first-page":"1496","DOI":"10.1016\/j.molp.2023.07.005","article-title":"Genetic and molecular exploration of maize environmental stress resilience: Toward sustainable agriculture","volume":"16","author":"Yang","year":"2023","journal-title":"Mol. Plant"},{"key":"B83","doi-asserted-by":"publisher","first-page":"466","DOI":"10.1111\/pbi.13944","article-title":"Multi-stress resilience in plants recovering from submergence","volume":"21","author":"Yuan","year":"2023","journal-title":"Plant Biotechnol. J."},{"key":"B84","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2025.1545912","article-title":"A review of soil waterlogging impacts, mechanisms, and adaptive strategies","volume":"16","author":"Zhang","year":"2025","journal-title":"Front. Plant Sci."},{"key":"B85","doi-asserted-by":"publisher","first-page":"228","DOI":"10.1016\/j.plaphy.2020.01.020","article-title":"Plant waterlogging\/flooding stress responses: From seed germination to maturation","volume":"148","author":"Zhou","year":"2020","journal-title":"Plant Physiol. Biochem."},{"key":"B86","doi-asserted-by":"publisher","first-page":"889","DOI":"10.1093\/plcell\/koab289","article-title":"Phosphatidic acid modulates MPK3- and MPK6-mediated hypoxia signaling in Arabidopsis","volume":"34","author":"Zhou","year":"2022","journal-title":"Plant Cell"}],"container-title":["Frontiers in Plant Science"],"original-title":[],"link":[{"URL":"https:\/\/www.frontiersin.org\/articles\/10.3389\/fpls.2026.1882944\/full","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,9,11]],"date-time":"2026-09-11T04:29:54Z","timestamp":1789100994000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.frontiersin.org\/articles\/10.3389\/fpls.2026.1882944\/full"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9,11]]},"references-count":86,"alternative-id":["10.3389\/fpls.2026.1882944"],"URL":"https:\/\/doi.org\/10.3389\/fpls.2026.1882944","relation":{},"ISSN":["1664-462X"],"issn-type":[{"value":"1664-462X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,9,11]]},"article-number":"1882944"}}