{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,7]],"date-time":"2026-09-07T06:08:14Z","timestamp":1788761294365,"version":"build-2803163510"},"reference-count":61,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2026,9,7]],"date-time":"2026-09-07T00:00:00Z","timestamp":1788739200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Plant Sci."],"abstract":"\n Introduction<\/jats:title>\n \n Tobacco black shank (TBS), caused by\n Phytophthora nicotianae<\/jats:italic>\n , is a devastating disease. Current control relies heavily on chemical pesticides, which pose risks of resistance and environmental pollution. Biological control using rhizosphere microorganisms offers a sustainable alternative. However, the relationship between the composition of the rhizosphere microbiome and its suppressive activity against\n P. nicotianae<\/jats:italic>\n has not yet been systematically elucidated.\n <\/jats:p>\n <\/jats:sec>\n \n Methods<\/jats:title>\n \n High-throughput sequencing was used to compare the differences in rhizosphere microbiota of healthy and diseased plants from multiple field sites in Yunnan, China, combined with culture-dependent isolation and screening of antagonistic microorganisms against\n P. nicotianae<\/jats:italic>\n .\n <\/jats:p>\n <\/jats:sec>\n \n Results<\/jats:title>\n \n No significant differences in bacterial or fungal diversity were found between healthy and diseased rhizosphere soils. Despite this overall similarity in diversity, healthy rhizosphere soil was significantly enriched in biocontrol genera, including\n Pseudomonas<\/jats:italic>\n ,\n Paenibacillus<\/jats:italic>\n , and\n Massilia<\/jats:italic>\n . A total of 204 bacterial and 95 fungal strains were isolated, among which 64 bacteria and 41 fungi exhibited antagonistic activity against\n P. nicotianae<\/jats:italic>\n . Four strains (710, 733, 1088, and 1145) showed the strongest inhibitory effects and were identified as\n Bacillus amyloliquefaciens<\/jats:italic>\n ,\n Yokenella<\/jats:italic>\n sp.,\n Metapseudomonas resinovorans<\/jats:italic>\n , and\n Bacillus subtilis<\/jats:italic>\n , respectively. Moreover, the soluble metabolites and volatile metabolites produced by these strains also inhibited\n P. nicotianae<\/jats:italic>\n . Notably, this study provides the first evidence that\n Y. regensburgei<\/jats:italic>\n and\n M. resinovorans<\/jats:italic>\n function as biocontrol agents against\n P. nicotianae<\/jats:italic>\n , with mycelial inhibition rates reaching 72.29% and 38.96%, respectively.\n <\/jats:p>\n <\/jats:sec>\n \n Discussion<\/jats:title>\n \n These results reveal the enrichment of specific biocontrol taxa in healthy tobacco rhizosphere and identify\n Y. regensburgei<\/jats:italic>\n and\n M. resinovorans<\/jats:italic>\n as novel antagonists against\n P. nicotianae<\/jats:italic>\n . This study expands the strain library for TBS biological control and provides promising candidates for developing green management strategies.\n <\/jats:p>\n <\/jats:sec>","DOI":"10.3389\/fpls.2026.1889242","type":"journal-article","created":{"date-parts":[[2026,9,7]],"date-time":"2026-09-07T05:33:26Z","timestamp":1788759206000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":0,"title":["Rhizosphere microbial diversity analysis reveals enrichment of biocontrol taxa in healthy tobacco plants and yields novel antagonists against Phytophthora nicotianae"],"prefix":"10.3389","volume":"17","author":[{"given":"Juan","family":"Xu","sequence":"first","affiliation":[{"name":"Dali Prefecture Branch of Yunnan Tobacco Company","place":["Dali, China"]},{"name":"College of Pharmaceutical Science, Dali University","place":["Dali, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wenqiang","family":"Mei","sequence":"additional","affiliation":[{"name":"Dali Prefecture Branch of Yunnan Tobacco Company","place":["Dali, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Junli","family":"Shi","sequence":"additional","affiliation":[{"name":"Yunnan Academy of Tobacco Agricultural Sciences","place":["Kunming, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Juan","family":"Li","sequence":"additional","affiliation":[{"name":"Dali Prefecture Branch of Yunnan Tobacco Company","place":["Dali, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ming","family":"Liu","sequence":"additional","affiliation":[{"name":"Dali Prefecture Branch of Yunnan Tobacco Company","place":["Dali, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhijuan","family":"Yang","sequence":"additional","affiliation":[{"name":"Dali Branch of Dali State Tobacco Company","place":["Dali, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nengfei","family":"Tian","sequence":"additional","affiliation":[{"name":"College of Plant Protection, Yunnan Agricultural University","place":["Kunming, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yanxia","family":"Hu","sequence":"additional","affiliation":[{"name":"Dali Prefecture Branch of Yunnan Tobacco Company","place":["Dali, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1965","published-online":{"date-parts":[[2026,9,7]]},"reference":[{"key":"B1","doi-asserted-by":"publisher","first-page":"478","DOI":"10.1016\/j.tplants.2012.04.001","article-title":"The rhizosphere microbiome and plant health","volume":"17","author":"Berendsen","year":"2012","journal-title":"Trends Plant Sci."},{"key":"B2","doi-asserted-by":"publisher","first-page":"22050","DOI":"10.1038\/s41598-023-49304-w","article-title":"Isolation and evaluation of Qatari soil rhizobacteria for antagonistic potential against phytopathogens and growth promotion in tomato plants","volume":"13","author":"BiBi","year":"2023","journal-title":"Sci. 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