{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,13]],"date-time":"2026-10-13T16:53:32Z","timestamp":1791910412343,"version":"4.3.4"},"reference-count":44,"publisher":"Frontiers Media SA","license":[{"start":{"date-parts":[[2026,7,27]],"date-time":"2026-07-27T00:00:00Z","timestamp":1785110400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["frontiersin.org"],"crossmark-restriction":true},"short-container-title":["Front. Plant Sci."],"abstract":"<jats:p>\n                    <jats:italic>Lonicera japonica<\/jats:italic>\n                    Thunb. is a traditional medicinal plant rich in bioactive flavonoids, but the transcriptional regulation of flavonoid biosynthesis remains unclear. In this study, we identified LjMYB106, an R2R3-MYB transcription factor associated with flavonoid accumulation, from floral developmental transcriptomes. Sequence and phylogenetic analyses showed that LjMYB106 contains conserved R2 and R3 MYB domains and is closely related to homologous MYB proteins. Heterologous overexpression of\n                    <jats:italic>LjMYB106<\/jats:italic>\n                    in\n                    <jats:italic>Arabidopsis thaliana<\/jats:italic>\n                    and\n                    <jats:italic>Nicotiana benthamiana<\/jats:italic>\n                    increased total flavonoid and p-coumaric acid contents. Integrated transcriptomic and widely targeted metabolomic analyses in\n                    <jats:italic>A. thaliana<\/jats:italic>\n                    showed that\n                    <jats:italic>LjMYB106<\/jats:italic>\n                    overexpression was associated with changes in phenylpropanoid and flavonoid biosynthetic pathways. qRT-PCR validation further showed that\n                    <jats:italic>PAL<\/jats:italic>\n                    ,\n                    <jats:italic>C4H<\/jats:italic>\n                    ,\n                    <jats:italic>4CL<\/jats:italic>\n                    ,\n                    <jats:italic>CHS<\/jats:italic>\n                    ,\n                    <jats:italic>DFR<\/jats:italic>\n                    , and\n                    <jats:italic>ANS<\/jats:italic>\n                    homologs were up-regulated, whereas\n                    <jats:italic>CHI<\/jats:italic>\n                    ,\n                    <jats:italic>F3H<\/jats:italic>\n                    , and\n                    <jats:italic>FLS<\/jats:italic>\n                    homologs were down-regulated in\n                    <jats:italic>LjMYB106<\/jats:italic>\n                    -overexpressing plants. Subcellular localization and yeast transactivation assays indicated that LjMYB106 is a nuclear protein with transcriptional activation activity. These results suggest that LjMYB106 is a candidate regulator of phenylpropanoid and flavonoid metabolism and provide a basis for further studies of MYB-mediated flavonoid regulation in\n                    <jats:italic>L. japonica<\/jats:italic>\n                    .\n                  <\/jats:p>","DOI":"10.3389\/fpls.2026.1896352","type":"journal-article","created":{"date-parts":[[2026,7,27]],"date-time":"2026-07-27T05:41:00Z","timestamp":1785130860000},"update-policy":"https:\/\/doi.org\/10.3389\/crossmark-policy","source":"Crossref","is-referenced-by-count":1,"title":["Heterologous expression of the honeysuckle R2R3-MYB transcription factor LjMYB106 enhances phenylpropanoid and flavonoid metabolism in Arabidopsis thaliana and Nicotiana benthamiana"],"prefix":"10.3389","volume":"17","author":[{"given":"Jiangxin","family":"Yang","sequence":"first","affiliation":[{"name":"Resource Institute for Chinese and Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine","place":["Guizhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jingjie","family":"Zhang","sequence":"additional","affiliation":[{"name":"Resource Institute for Chinese and Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine","place":["Guizhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xinghua","family":"Nie","sequence":"additional","affiliation":[{"name":"Resource Institute for Chinese and Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine","place":["Guizhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Huan","family":"Shi","sequence":"additional","affiliation":[{"name":"Resource Institute for Chinese and Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine","place":["Guizhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Qiaoqiao","family":"Xiao","sequence":"additional","affiliation":[{"name":"Resource Institute for Chinese and Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine","place":["Guizhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jiaotong","family":"Yang","sequence":"additional","affiliation":[{"name":"Resource Institute for Chinese and Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine","place":["Guizhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"1965","published-online":{"date-parts":[[2026,7,27]]},"reference":[{"key":"B1","doi-asserted-by":"publisher","first-page":"D444","DOI":"10.1093\/nar\/gkae1082","article-title":"InterPro: the protein sequence classification resource in 2025","volume":"53","author":"Blum","year":"2025","journal-title":"Nucleic Acids Res."},{"key":"B2","first-page":"192","article-title":"Research progress on the regulation of flavonoid biosynthesis in medicinal plants","volume":"18","author":"Bu","year":"2021","journal-title":"Northern Pharm."},{"key":"B3","doi-asserted-by":"publisher","DOI":"10.3389\/fphar.2023.1277283","article-title":"Lonicerae Japonicae Caulis: a review of its research progress of active metabolites and pharmacological effects","volume":"14","author":"Cao","year":"2023","journal-title":"Front. Pharmacol."},{"key":"B4","doi-asserted-by":"publisher","first-page":"43","DOI":"10.1016\/j.chroma.2005.02.031","article-title":"Quality evaluation of Flos Lonicerae through a simultaneous determination of seven saponins by HPLC with ELSD","volume":"1070","author":"Chai","year":"2005","journal-title":"J. Chromatogr. A"},{"key":"B5","doi-asserted-by":"publisher","first-page":"849","DOI":"10.1016\/j.synbio.2022.04.006","article-title":"Functional characterization of key polyketide synthases by integrated metabolome and transcriptome analysis on curcuminoid biosynthesis in Curcuma wenyujin","volume":"7","author":"Chen","year":"2022","journal-title":"Synth Syst. Biotechnol."},{"key":"B6","doi-asserted-by":"publisher","first-page":"365","DOI":"10.1002\/jssc.200400024","article-title":"Qualitative and quantitative analysis of active flavonoids in Flos Lonicerae by capillary zone electrophoresis coupled with solid-phase extraction","volume":"28","author":"Chen","year":"2005","journal-title":"J. Sep Sci."},{"key":"B7","doi-asserted-by":"publisher","first-page":"i884","DOI":"10.1093\/bioinformatics\/bty560","article-title":"fastp: an ultra-fast all-in-one FASTQ preprocessor","volume":"34","author":"Chen","year":"2018","journal-title":"Bioinformatics"},{"key":"B8","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1002195","article-title":"Accelerated profile HMM searches","volume":"7","author":"Eddy","year":"2011","journal-title":"PloS Comput. Biol."},{"key":"B9","doi-asserted-by":"publisher","first-page":"1792","DOI":"10.1093\/nar\/gkh340","article-title":"MUSCLE: multiple sequence alignment with high accuracy and high throughput","volume":"32","author":"Edgar","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"B10","doi-asserted-by":"publisher","DOI":"10.1093\/hr\/uhac266","article-title":"SbMYB3 transcription factor promotes root-specific flavone biosynthesis in Scutellaria baicalensis","volume":"10","author":"Fang","year":"2023","journal-title":"Hortic. Res."},{"key":"B11","doi-asserted-by":"publisher","DOI":"10.1199\/tab.0152","article-title":"The phenylpropanoid pathway in Arabidopsis","volume":"9","author":"Fraser","year":"2011","journal-title":"Arabidopsis Book"},{"key":"B12","doi-asserted-by":"publisher","DOI":"10.1016\/j.phymed.2021.153889","article-title":"Genus Lonicera: New drug discovery from traditional usage to modern chemical and pharmacological research","volume":"96","author":"Ge","year":"2022","journal-title":"Phytomedicine"},{"key":"B13","doi-asserted-by":"publisher","first-page":"814","DOI":"10.1111\/j.1365-313x.2007.03373.x","article-title":"Regulation of the anthocyanin biosynthetic pathway by the TTG1\/bHLH\/Myb transcriptional complex in Arabidopsis seedlings","volume":"53","author":"Gonzalez","year":"2008","journal-title":"Plant J."},{"key":"B14","doi-asserted-by":"publisher","first-page":"D1178","DOI":"10.1093\/nar\/gkr944","article-title":"Phytozome: a comparative platform for green plant genomics","volume":"40","author":"Goodstein","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"B15","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1155\/2015\/201386","article-title":"Isolation, characterization, and RP-HPLC estimation of p-coumaric acid from methanolic extract of Durva grass (Cynodon dactylon Linn.) (Pers.)","volume":"2015","author":"Karthikeyan","year":"2015","journal-title":"Int. J. Anal. Chem."},{"key":"B16","doi-asserted-by":"publisher","first-page":"907","DOI":"10.1038\/s41587-019-0201-4","article-title":"Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype","volume":"37","author":"Kim","year":"2019","journal-title":"Nat. Biotechnol."},{"key":"B17","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msae263","article-title":"MEGA12: molecular evolutionary genetic analysis version 12 for adaptive and green computing","volume":"41","author":"Kumar","year":"2024","journal-title":"Mol. Biol. Evol."},{"key":"B18","doi-asserted-by":"publisher","first-page":"405","DOI":"10.1146\/annurev.arplant.57.032905.105252","article-title":"Genetics and biochemistry of seed flavonoids","volume":"57","author":"Lepiniec","year":"2006","journal-title":"Annu. Rev. Plant Biol."},{"key":"B19","doi-asserted-by":"publisher","first-page":"779","DOI":"10.21273\/hortsci13819-18","article-title":"Analysis of flower color variations at different developmental stages in two honeysuckle (Lonicera japonica thunb.) cultivars","volume":"54","author":"Li","year":"2019","journal-title":"HortScience"},{"key":"B20","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2025.1636028","article-title":"Integrated metabolomic and transcriptomic analysis elucidates transcriptional regulation of flavonoid biosynthesis in differentially pigmented honeysuckle (Lonicera japonica) varieties","volume":"16","author":"Liao","year":"2025","journal-title":"Front. Plant Sci."},{"key":"B21","doi-asserted-by":"publisher","DOI":"10.3390\/ijms222312824","article-title":"The flavonoid biosynthesis network in plants","volume":"22","author":"Liu","year":"2021","journal-title":"Int. J. Mol. Sci."},{"key":"B22","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-014-0550-8","article-title":"Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2","volume":"15","author":"Love","year":"2014","journal-title":"Genome Biol."},{"key":"B23","doi-asserted-by":"publisher","first-page":"185","DOI":"10.1016\/j.chroma.2003.11.004","article-title":"Application of preparative high-speed counter-current chromatography for separation of chlorogenic acid from Flos Lonicerae","volume":"1026","author":"Lu","year":"2004","journal-title":"J. Chromatogr. A"},{"key":"B24","doi-asserted-by":"publisher","first-page":"1083","DOI":"10.1104\/pp.104.058032","article-title":"The arabidopsis transcription factor MYB12 is a flavonol-specific regulator of phenylpropanoid biosynthesis","volume":"138","author":"Mehrtens","year":"2005","journal-title":"Plant Physiol."},{"key":"B25","doi-asserted-by":"publisher","first-page":"290","DOI":"10.1038\/nbt.3122","article-title":"StringTie enables improved reconstruction of a transcriptome from RNA-seq reads","volume":"33","author":"Pertea","year":"2015","journal-title":"Nat. Biotechnol."},{"key":"B26","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1016\/j.tplants.2006.11.006","article-title":"Flavonoid oxidation in plants: from biochemical properties to physiological functions","volume":"12","author":"Pourcel","year":"2007","journal-title":"Trends Plant Sci."},{"key":"B27","doi-asserted-by":"publisher","DOI":"10.3390\/ijms20184494","article-title":"Ectopic Expression of a R2R3-MYB Transcription Factor Gene LjaMYB12 from Lonicera japonica Increases Flavonoid Accumulation in Arabidopsis thaliana","volume":"20","author":"Qi","year":"2019","journal-title":"Int. J. Mol. Sci."},{"key":"B28","doi-asserted-by":"publisher","DOI":"10.3390\/ijms26115292","article-title":"The light-regulated ssMYB106 transcription factor promotes flavonoids in spatholobus suberectus","volume":"26","author":"Qin","year":"2025","journal-title":"Int. J. Mol. Sci."},{"key":"B29","doi-asserted-by":"publisher","first-page":"21","DOI":"10.1016\/j.plaphy.2013.02.001","article-title":"The flavonoid biosynthetic pathway in Arabidopsis: Structural and genetic diversity","volume":"72","author":"Saito","year":"2013","journal-title":"Plant Physiol. Biochem."},{"key":"B30","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.jep.2011.08.016","article-title":"Lonicera japonica Thunb.: Ethnopharmacology, phytochemistry and pharmacology of an important traditional Chinese medicine","volume":"138","author":"Shang","year":"2011","journal-title":"J. Ethnopharmacol."},{"key":"B31","doi-asserted-by":"publisher","first-page":"660","DOI":"10.1111\/j.1365-313x.2007.03078.x","article-title":"Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling","volume":"50","author":"Stracke","year":"2007","journal-title":"Plant J."},{"key":"B32","doi-asserted-by":"publisher","first-page":"251","DOI":"10.1515\/znc-2016-0221","article-title":"The AtMYB12 activation domain maps to a short C-terminal region of the transcription factor","volume":"72","author":"Stracke","year":"2017","journal-title":"Z Naturforsch C J. Biosci."},{"key":"B33","doi-asserted-by":"publisher","first-page":"1840","DOI":"10.1104\/pp.105.066688","article-title":"Sucrose-specific induction of anthocyanin biosynthesis in Arabidopsis requires the MYB75\/PAP1 gene","volume":"139","author":"Teng","year":"2005","journal-title":"Plant Physiol."},{"key":"B34","doi-asserted-by":"publisher","first-page":"2","DOI":"10.1093\/mp\/ssp106","article-title":"Phenylpropanoid biosynthesis","volume":"3","author":"Vogt","year":"2010","journal-title":"Mol. Plant"},{"key":"B35","doi-asserted-by":"publisher","first-page":"862","DOI":"10.1111\/tpj.15203","article-title":"Multi-omics analysis to visualize the dynamic roles of defense genes in the response of tea plants to gray blight","volume":"106","author":"Wang","year":"2021","journal-title":"Plant J."},{"key":"B36","doi-asserted-by":"publisher","first-page":"485","DOI":"10.1104\/pp.126.2.485","article-title":"Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology","volume":"126","author":"Winkel-Shirley","year":"2001","journal-title":"Plant Physiol."},{"key":"B37","doi-asserted-by":"publisher","first-page":"176","DOI":"10.1016\/j.tplants.2014.12.001","article-title":"Transcriptional control of flavonoid biosynthesis by MYB\u2013bHLH\u2013WDR complexes","volume":"20","author":"Xu","year":"2015","journal-title":"Trends Plant Sci."},{"key":"B38","first-page":"1","article-title":"Application research of combined transcriptome and metabolome analysis in plants","volume":"42","author":"Xue","year":"2022","journal-title":"J. Shanxi Agric. Univ. Nat. Sci. Ed."},{"key":"B39","doi-asserted-by":"publisher","DOI":"10.3390\/molecules28124828","article-title":"Extraction, purification, structural characteristics, health benefits, and application of the polysaccharides from lonicera japonica thunb.: A review","volume":"28","author":"Yang","year":"2023","journal-title":"Molecules"},{"key":"B40","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2021.811166","article-title":"Integrated analysis of basic helix loop helix transcription factor family and targeted terpenoids reveals candidate AarbHLH genes involved in terpenoid biosynthesis in Artemisia argyi","volume":"12","author":"Yi","year":"2021","journal-title":"Front. Plant Sci."},{"key":"B41","doi-asserted-by":"publisher","first-page":"284","DOI":"10.1089\/omi.2011.0118","article-title":"clusterProfiler: an R package for comparing biological themes among gene clusters","volume":"16","author":"Yu","year":"2012","journal-title":"OMICS"},{"key":"B42","doi-asserted-by":"publisher","first-page":"328","DOI":"10.1186\/s12864-025-11507-y","article-title":"LoniComp: a platform for gene function comparison and analysis between Lonicera japonica and Lonicera macranthoides","volume":"26","author":"Zhang","year":"2025","journal-title":"BMC Genomics"},{"key":"B43","first-page":"2666","article-title":"Transcriptional regulation mechanism of differential flavonoid accumulation in different varieties of Lonicera macranthoides based on metabolomics and transcriptomics","volume":"49","author":"Zhang","year":"2024","journal-title":"China J. Chin. Mater. Med."},{"key":"B44","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1155\/2018\/8195784","article-title":"Determination of total flavonoids contents and antioxidant activity of Ginkgo biloba leaf by near-infrared reflectance method","volume":"2018","author":"Zhao","year":"2018","journal-title":"Int. J. Anal. Chem."}],"container-title":["Frontiers in Plant Science"],"original-title":[],"link":[{"URL":"https:\/\/www.frontiersin.org\/articles\/10.3389\/fpls.2026.1896352\/full","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,7,27]],"date-time":"2026-07-27T05:41:03Z","timestamp":1785130863000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.frontiersin.org\/articles\/10.3389\/fpls.2026.1896352\/full"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,7,27]]},"references-count":44,"alternative-id":["10.3389\/fpls.2026.1896352"],"URL":"https:\/\/doi.org\/10.3389\/fpls.2026.1896352","relation":{},"ISSN":["1664-462X"],"issn-type":[{"value":"1664-462X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,7,27]]},"article-number":"1896352"}}